Wall clock time and date at job start Tue Mar 31 2020 20:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.71469 * 2 1 4 4 C 1.52989 * 109.71614 * 239.38679 * 2 1 3 5 5 H 1.09006 * 109.21405 * 166.71485 * 4 2 1 6 6 C 1.52995 * 109.18189 * 47.36365 * 4 2 1 7 7 N 1.45640 * 110.77167 * 287.04783 * 4 2 1 8 8 C 1.33378 * 124.59546 * 338.10729 * 7 4 2 9 9 O 1.21278 * 118.49211 * 184.29561 * 8 7 4 10 10 C 1.50441 * 123.01982 * 4.31367 * 8 7 4 11 11 H 1.09007 * 109.56398 * 227.35587 * 10 8 7 12 12 C 1.52997 * 109.56907 * 107.11791 * 10 8 7 13 13 N 1.47050 * 108.89202 * 347.29270 * 10 8 7 14 14 C 1.34769 * 121.35497 * 222.71883 * 13 10 8 15 15 O 1.21597 * 119.99952 * 179.97438 * 14 13 10 16 16 N 1.34779 * 120.00336 * 359.97438 * 14 13 10 17 17 C 1.46502 * 120.00230 * 180.02562 * 16 14 13 18 18 H 1.08997 * 109.46867 * 324.99495 * 17 16 14 19 19 C 1.50700 * 109.47019 * 205.00094 * 17 16 14 20 20 H 1.08003 * 119.99712 * 271.63438 * 19 17 16 21 21 C 1.37875 * 119.99826 * 91.63159 * 19 17 16 22 22 N 1.31522 * 119.99357 * 172.14566 * 21 19 17 23 23 Si 1.86792 * 120.00533 * 352.14813 * 21 19 17 24 24 H 1.48500 * 109.47166 * 85.12802 * 23 21 19 25 25 H 1.48497 * 109.47503 * 205.12644 * 23 21 19 26 26 H 1.48496 * 109.47300 * 325.12876 * 23 21 19 27 27 C 1.53000 * 109.47003 * 84.99739 * 17 16 14 28 28 F 1.39897 * 109.47182 * 54.31858 * 27 17 16 29 29 F 1.39902 * 109.46472 * 174.31817 * 27 17 16 30 30 F 1.39903 * 109.46949 * 294.31438 * 27 17 16 31 31 H 1.08998 * 109.47297 * 163.24227 * 1 2 3 32 32 H 1.09005 * 109.46900 * 283.23865 * 1 2 3 33 33 H 1.08997 * 109.47195 * 43.23567 * 1 2 3 34 34 H 1.09000 * 109.47539 * 298.73606 * 6 4 2 35 35 H 1.09003 * 109.47357 * 58.73830 * 6 4 2 36 36 H 1.09002 * 109.47243 * 178.73681 * 6 4 2 37 37 H 0.97002 * 117.70174 * 158.12479 * 7 4 2 38 38 H 1.08996 * 109.47107 * 76.78119 * 12 10 8 39 39 H 1.09006 * 109.46838 * 316.78463 * 12 10 8 40 40 H 1.08994 * 109.47187 * 196.78226 * 12 10 8 41 41 H 0.96998 * 119.99638 * 0.02562 * 16 14 13 42 42 H 0.97007 * 119.99719 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8977 1.0261 0.0000 4 6 2.0461 -0.7334 -1.2395 5 1 3.1102 -0.5297 -1.3597 6 6 1.2943 -0.2277 -2.4723 7 7 1.8446 -2.1700 -1.1109 8 6 1.6872 -2.8120 0.0477 9 8 1.6057 -4.0219 0.0322 10 6 1.6056 -2.1041 1.3726 11 1 2.2626 -2.5958 2.0902 12 6 0.1651 -2.1428 1.8865 13 7 2.0270 -0.7068 1.1926 14 6 2.8347 -0.0976 2.0830 15 8 3.1682 1.0588 1.9096 16 7 3.2728 -0.7702 3.1657 17 6 4.1504 -0.1078 4.1340 18 1 4.8149 0.5799 3.6109 19 6 4.9698 -1.1435 4.8599 20 1 4.5851 -1.6041 5.7579 21 6 6.2104 -1.5031 4.3776 22 7 6.9900 -2.2880 5.0888 23 14 6.7838 -0.8755 2.7143 24 1 7.3967 0.4674 2.8765 25 1 7.7880 -1.8131 2.1508 26 1 5.6226 -0.7816 1.7935 27 6 3.3023 0.6701 5.1422 28 9 2.3609 -0.1883 5.7203 29 9 4.1297 1.1952 6.1406 30 9 2.6408 1.7147 4.4875 31 1 -0.3634 -0.9840 -0.2963 32 1 -0.3633 0.2354 1.0004 33 1 -0.3633 0.7487 -0.7039 34 1 0.2308 -0.4391 -2.3614 35 1 1.4425 0.8476 -2.5725 36 1 1.6741 -0.7311 -3.3613 37 1 1.8236 -2.6971 -1.9249 38 1 -0.0507 -3.1326 2.2888 39 1 -0.5193 -1.9270 1.0660 40 1 0.0389 -1.3965 2.6707 41 1 3.0071 -1.6928 3.3039 42 1 7.8627 -2.5414 4.7493 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932896750.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:51 Heat of formation + Delta-G solvation = -229.755726 kcal Electronic energy + Delta-G solvation = -32406.604173 eV Core-core repulsion = 27585.186170 eV Total energy + Delta-G solvation = -4821.418003 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -50.85197 -48.35400 -48.34439 -42.36573 -40.51535 -38.48097 -36.60797 -36.30016 -34.50546 -33.22588 -31.83369 -30.72364 -29.49733 -26.91499 -25.94249 -25.53731 -23.39076 -22.68184 -21.85038 -20.49522 -19.60070 -19.34705 -19.19996 -18.72570 -18.42753 -18.22466 -17.62352 -16.89540 -16.62433 -16.38694 -16.08325 -15.76081 -15.41017 -15.24740 -15.04537 -14.90127 -14.80236 -14.57610 -14.54933 -14.53682 -14.47649 -14.01350 -13.81903 -13.71236 -13.47707 -13.32761 -13.24705 -12.97943 -12.88161 -12.60099 -12.29016 -12.21826 -12.10057 -11.83517 -11.73560 -11.63633 -11.11352 -10.95962 -10.32181 -10.22237 -9.67858 -8.58140 -6.75783 1.19058 1.29418 1.35902 1.36814 1.42297 1.87175 2.08962 2.14281 2.24134 2.53441 2.96200 3.23179 3.34368 3.35990 3.51044 3.62860 3.75976 3.93493 3.96918 4.07334 4.29416 4.35890 4.44044 4.61971 4.66385 4.72279 4.87230 4.91018 4.94930 5.01096 5.10382 5.21433 5.30401 5.39122 5.42969 5.68939 5.76079 5.92015 6.12213 6.41909 6.86485 6.97139 7.02503 7.46907 8.54069 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.012713 B = 0.005256 C = 0.004643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.922057 B = 5325.959415 C = 6029.435737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.135 3.865 3 H 0.109 0.891 4 C 0.126 3.874 5 H 0.068 0.932 6 C -0.154 4.154 7 N -0.696 5.696 8 C 0.523 3.477 9 O -0.580 6.580 10 C 0.122 3.878 11 H 0.106 0.894 12 C -0.153 4.153 13 N -0.625 5.625 14 C 0.701 3.299 15 O -0.613 6.613 16 N -0.728 5.728 17 C 0.231 3.769 18 H 0.077 0.923 19 C -0.536 4.536 20 H 0.067 0.933 21 C 0.063 3.937 22 N -0.895 5.895 23 Si 0.926 3.074 24 H -0.267 1.267 25 H -0.276 1.276 26 H -0.257 1.257 27 C 0.442 3.558 28 F -0.187 7.187 29 F -0.185 7.185 30 F -0.190 7.190 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.408 0.592 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.403 0.597 42 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.754 3.677 -14.918 20.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.032 3.968 3 H 0.127 0.873 4 C 0.021 3.979 5 H 0.086 0.914 6 C -0.212 4.212 7 N -0.348 5.348 8 C 0.308 3.692 9 O -0.460 6.460 10 C 0.014 3.986 11 H 0.124 0.876 12 C -0.212 4.212 13 N -0.364 5.364 14 C 0.403 3.597 15 O -0.493 6.493 16 N -0.385 5.385 17 C 0.125 3.875 18 H 0.094 0.906 19 C -0.574 4.574 20 H 0.085 0.915 21 C -0.144 4.144 22 N -0.529 5.529 23 Si 0.749 3.251 24 H -0.192 1.192 25 H -0.201 1.201 26 H -0.181 1.181 27 C 0.386 3.614 28 F -0.168 7.168 29 F -0.167 7.167 30 F -0.171 7.171 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.116 0.884 34 H 0.099 0.901 35 H 0.108 0.892 36 H 0.096 0.904 37 H 0.245 0.755 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.092 0.908 41 H 0.241 0.759 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.358 3.960 -14.789 20.318 hybrid contribution 0.627 -0.446 -0.184 0.792 sum -12.731 3.514 -14.973 19.965 Atomic orbital electron populations 1.22402 0.92044 1.03491 1.03502 1.21694 0.96273 0.97469 0.81373 0.87269 1.21499 1.00628 0.78902 0.96882 0.91415 1.22170 1.01249 1.03160 0.94623 1.45452 1.71630 1.09389 1.08312 1.20175 0.75157 0.87111 0.86743 1.90772 1.52553 1.15053 1.87651 1.21418 1.00589 0.81459 0.95105 0.87625 1.22337 0.92002 1.04076 1.02745 1.47711 1.51069 1.12365 1.25224 1.16252 0.78627 0.84468 0.80323 1.90858 1.63371 1.16965 1.78105 1.46563 1.52443 1.16464 1.22985 1.19576 0.87440 0.94420 0.86041 0.90562 1.20667 1.01348 1.23881 1.11516 0.91525 1.25548 0.95569 0.93634 0.99650 1.69946 1.10246 1.34224 1.38489 0.86057 0.79248 0.78936 0.80814 1.19207 1.20085 1.18083 1.21475 0.79195 0.78129 0.82581 1.93074 1.67243 1.70388 1.86136 1.93106 1.72411 1.87404 1.63786 1.93153 1.82516 1.60566 1.80901 0.91251 0.92163 0.88361 0.90081 0.89198 0.90398 0.75461 0.90014 0.89424 0.90760 0.75899 0.91025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 6.34 71.98 0.46 -1.88 16 2 C 0.14 2.87 2.94 44.84 0.13 3.00 16 3 H 0.11 2.61 7.06 -2.39 -0.02 2.60 16 4 C 0.13 2.16 3.53 45.15 0.16 2.32 16 5 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 6 C -0.15 -1.34 8.69 71.98 0.63 -0.72 16 7 N -0.70 -13.67 4.86 -446.43 -2.17 -15.84 16 8 C 0.52 13.83 6.55 87.79 0.58 14.41 16 9 O -0.58 -19.20 17.80 -3.02 -0.05 -19.25 16 10 C 0.12 3.21 2.88 44.06 0.13 3.34 16 11 H 0.11 3.11 5.96 -2.38 -0.01 3.10 16 12 C -0.15 -3.21 8.17 71.98 0.59 -2.62 16 13 N -0.62 -17.88 2.49 -793.27 -1.98 -19.86 16 14 C 0.70 26.44 7.94 179.06 1.42 27.87 16 15 O -0.61 -26.43 14.40 -4.02 -0.06 -26.49 16 16 N -0.73 -29.10 4.56 -461.40 -2.10 -31.21 16 17 C 0.23 10.54 1.47 44.25 0.06 10.61 16 18 H 0.08 3.70 5.45 -2.39 -0.01 3.69 16 19 C -0.54 -27.59 8.51 25.60 0.22 -27.38 16 20 H 0.07 3.75 8.01 -2.91 -0.02 3.73 16 21 C 0.06 3.31 5.47 84.65 0.46 3.77 16 22 N -0.89 -49.94 13.96 21.45 0.30 -49.64 16 23 Si 0.93 41.94 26.85 68.60 1.84 43.78 16 24 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 25 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 26 H -0.26 -11.56 6.92 99.48 0.69 -10.87 16 27 C 0.44 19.42 2.84 71.98 0.20 19.62 16 28 F -0.19 -7.85 16.94 44.97 0.76 -7.08 16 29 F -0.19 -8.41 16.88 44.97 0.76 -7.65 16 30 F -0.19 -8.13 15.85 44.97 0.71 -7.42 16 31 H 0.07 0.95 5.33 -2.39 -0.01 0.94 16 32 H 0.06 1.06 7.51 -2.38 -0.02 1.04 16 33 H 0.10 0.96 7.49 -2.39 -0.02 0.94 16 34 H 0.08 0.57 6.64 -2.39 -0.02 0.55 16 35 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.41 6.61 8.61 -92.71 -0.80 5.81 16 38 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.09 1.51 5.06 -2.38 -0.01 1.50 16 40 H 0.07 1.62 8.13 -2.39 -0.02 1.60 16 41 H 0.40 14.99 6.23 -92.71 -0.58 14.42 16 42 H 0.28 14.56 8.31 -92.70 -0.77 13.79 16 Total: -1.00 -66.91 343.41 2.76 -64.15 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: -0.29 Total: 24.17 kcal Atomic # 6 Polarization: 47.30 SS G_CDS: 5.03 Total: 52.34 kcal Atomic # 7 Polarization: -110.59 SS G_CDS: -5.95 Total: -116.55 kcal Atomic # 8 Polarization: -45.63 SS G_CDS: -0.11 Total: -45.74 kcal Atomic # 9 Polarization: -24.38 SS G_CDS: 2.23 Total: -22.15 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 1.84 Total: 43.78 kcal Total: -66.91 2.76 -64.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932896750.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.607 kcal (2) G-P(sol) polarization free energy of solvation -66.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -232.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -229.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds