Wall clock time and date at job start Tue Mar 31 2020 20:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.17220 * 2 1 4 4 N 1.45640 * 109.22007 * 240.63924 * 2 1 3 5 5 C 1.33381 * 124.59031 * 261.54543 * 4 2 1 6 6 O 1.21284 * 118.49261 * 175.41439 * 5 4 2 7 7 C 1.50436 * 123.02345 * 355.69819 * 5 4 2 8 8 H 1.08996 * 109.56931 * 252.89331 * 7 5 4 9 9 C 1.52999 * 109.57150 * 132.52999 * 7 5 4 10 10 N 1.47064 * 108.88815 * 12.71366 * 7 5 4 11 11 C 1.34773 * 121.36775 * 137.28548 * 10 7 5 12 12 O 1.21594 * 119.99781 * 355.00787 * 11 10 7 13 13 N 1.34776 * 120.00025 * 175.01371 * 11 10 7 14 14 C 1.46495 * 119.99790 * 185.08214 * 13 11 10 15 15 H 1.08997 * 109.47837 * 324.99794 * 14 13 11 16 16 C 1.50705 * 109.47310 * 204.99934 * 14 13 11 17 17 H 1.08004 * 119.99245 * 0.02562 * 16 14 13 18 18 C 1.37876 * 120.00381 * 180.02562 * 16 14 13 19 19 N 1.31516 * 119.99667 * 0.02562 * 18 16 14 20 20 Si 1.86801 * 119.99853 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47057 * 60.00441 * 20 18 16 22 22 H 1.48505 * 109.46912 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47218 * 299.99878 * 20 18 16 24 24 C 1.53000 * 109.47122 * 85.00196 * 14 13 11 25 25 F 1.39901 * 109.47302 * 59.99535 * 24 14 13 26 26 F 1.39905 * 109.47062 * 179.97438 * 24 14 13 27 27 F 1.39907 * 109.46955 * 299.99677 * 24 14 13 28 28 C 1.47273 * 117.27605 * 317.24227 * 10 7 5 29 29 H 1.09007 * 109.74880 * 181.21622 * 28 10 7 30 30 C 1.52995 * 109.72069 * 301.84513 * 28 10 7 31 31 H 1.09004 * 109.47064 * 179.36185 * 1 2 3 32 32 H 1.08998 * 109.47288 * 299.35956 * 1 2 3 33 33 H 1.08997 * 109.47159 * 59.36260 * 1 2 3 34 34 H 0.96998 * 117.70807 * 81.56432 * 4 2 1 35 35 H 1.09000 * 109.46879 * 51.01819 * 9 7 5 36 36 H 1.08999 * 109.47232 * 171.01545 * 9 7 5 37 37 H 1.09002 * 109.47309 * 291.01960 * 9 7 5 38 38 H 0.97003 * 120.00010 * 5.08218 * 13 11 10 39 39 H 0.97006 * 119.99610 * 180.02562 * 19 18 16 40 40 H 1.08997 * 109.47205 * 178.73309 * 30 28 10 41 41 H 1.08997 * 109.47593 * 298.73883 * 30 28 10 42 42 H 1.09009 * 109.46890 * 58.73522 * 30 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8880 1.0296 0.0000 4 7 2.0095 -0.6743 -1.1986 5 6 2.4112 -1.9454 -1.2429 6 8 2.7101 -2.4206 -2.3180 7 6 2.5047 -2.8187 -0.0216 8 1 3.5521 -2.9713 0.2388 9 6 1.8425 -4.1686 -0.3047 10 7 1.8120 -2.1545 1.0928 11 6 1.0080 -2.8415 1.9283 12 8 0.7710 -4.0151 1.7159 13 7 0.4666 -2.2277 2.9990 14 6 -0.3159 -2.9994 3.9677 15 1 -0.8689 -3.7815 3.4475 16 6 -1.2835 -2.0852 4.6742 17 1 -1.3128 -1.0344 4.4261 18 6 -2.1312 -2.5901 5.6373 19 7 -2.0950 -3.8695 5.9397 20 14 -3.3299 -1.4566 6.5135 21 1 -4.2439 -0.8390 5.5193 22 1 -4.1232 -2.2389 7.4953 23 1 -2.5761 -0.3913 7.2219 24 6 0.6253 -3.6357 4.9924 25 9 1.3351 -2.6320 5.6601 26 9 -0.1220 -4.3723 5.9178 27 9 1.5235 -4.4845 4.3365 28 6 2.0336 -0.7081 1.2592 29 1 1.4828 -0.3487 2.1285 30 6 3.5271 -0.4325 1.4442 31 1 -0.3633 -1.0276 -0.0114 32 1 -0.3634 0.5038 0.8956 33 1 -0.3633 0.5237 -0.8842 34 1 2.0390 -0.1631 -2.0224 35 1 2.2415 -4.5817 -1.2311 36 1 2.0487 -4.8540 0.5173 37 1 0.7655 -4.0316 -0.4022 38 1 0.5950 -1.2749 3.1283 39 1 -2.6917 -4.2248 6.6170 40 1 3.6888 0.6407 1.5444 41 1 3.8816 -0.9388 2.3420 42 1 4.0750 -0.8032 0.5778 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932896751.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:01 Heat of formation + Delta-G solvation = -177.239883 kcal Electronic energy + Delta-G solvation = -32557.803560 eV Core-core repulsion = 27738.662814 eV Total energy + Delta-G solvation = -4819.140746 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -48.37207 -46.02961 -45.63587 -41.21681 -39.08912 -37.28248 -35.23336 -34.30738 -32.90872 -31.90145 -30.13528 -29.82738 -27.77513 -24.85682 -24.54725 -24.02621 -22.37477 -21.71511 -20.27192 -18.77903 -18.27189 -17.37869 -16.99524 -16.80920 -16.66164 -16.43627 -16.03907 -15.34902 -15.04332 -14.88999 -14.65535 -14.39401 -13.95309 -13.64029 -13.44062 -13.17118 -12.94209 -12.75699 -12.58479 -12.53513 -12.42844 -12.32163 -12.17185 -12.06206 -12.02556 -11.86014 -11.71681 -11.58451 -11.39197 -11.21784 -11.13269 -10.90562 -10.80737 -10.40715 -10.20040 -9.71247 -9.31041 -8.98555 -8.76266 -8.57937 -8.21694 -6.27234 -4.51718 2.48237 2.66976 3.12786 3.16232 3.21960 3.23239 3.58800 4.05853 4.17735 4.27923 4.45351 4.56362 4.68217 4.78803 4.89881 5.02374 5.10952 5.23262 5.29601 5.42876 5.56403 5.58752 5.65735 5.80061 5.84907 5.92487 5.99150 6.10800 6.17408 6.26838 6.31480 6.63752 6.73508 6.78845 7.12793 7.15530 7.25216 7.51604 7.59972 8.06337 8.41502 8.49783 9.05125 9.18005 10.64117 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.016467 B = 0.004429 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.920228 B = 6321.022055 C = 6986.323617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.129 3.871 3 H 0.096 0.904 4 N -0.711 5.711 5 C 0.518 3.482 6 O -0.548 6.548 7 C 0.155 3.845 8 H 0.098 0.902 9 C -0.129 4.129 10 N -0.631 5.631 11 C 0.709 3.291 12 O -0.568 6.568 13 N -0.724 5.724 14 C 0.262 3.738 15 H 0.087 0.913 16 C -0.552 4.552 17 H 0.076 0.924 18 C 0.066 3.934 19 N -0.838 5.838 20 Si 0.915 3.085 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.273 1.273 24 C 0.416 3.584 25 F -0.210 7.210 26 F -0.137 7.137 27 F -0.218 7.218 28 C 0.126 3.874 29 H 0.108 0.892 30 C -0.164 4.164 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.396 0.604 35 H 0.056 0.944 36 H 0.093 0.907 37 H 0.067 0.933 38 H 0.391 0.609 39 H 0.269 0.731 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.333 9.787 -7.876 14.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.022 3.978 3 H 0.114 0.886 4 N -0.363 5.363 5 C 0.303 3.697 6 O -0.425 6.425 7 C 0.048 3.952 8 H 0.115 0.885 9 C -0.187 4.187 10 N -0.372 5.372 11 C 0.411 3.589 12 O -0.444 6.444 13 N -0.378 5.378 14 C 0.156 3.844 15 H 0.105 0.895 16 C -0.589 4.589 17 H 0.094 0.906 18 C -0.143 4.143 19 N -0.471 5.471 20 Si 0.741 3.259 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.198 1.198 24 C 0.359 3.641 25 F -0.192 7.192 26 F -0.118 7.118 27 F -0.200 7.200 28 C 0.021 3.979 29 H 0.126 0.874 30 C -0.222 4.222 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.232 0.768 35 H 0.074 0.926 36 H 0.112 0.888 37 H 0.086 0.914 38 H 0.227 0.773 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.205 8.293 -8.184 13.699 hybrid contribution -0.325 1.328 0.599 1.492 sum 6.880 9.621 -7.585 14.051 Atomic orbital electron populations 1.22290 0.94179 1.03595 1.02751 1.21386 0.95174 0.96422 0.84786 0.88601 1.45447 1.65908 1.12246 1.12651 1.20552 0.75766 0.82186 0.91157 1.90753 1.50151 1.71908 1.29680 1.21101 0.98229 0.93686 0.82189 0.88469 1.22069 1.01196 0.93230 1.02159 1.47494 1.50405 1.07757 1.31564 1.15880 0.78513 0.84803 0.79688 1.90954 1.64479 1.14569 1.74440 1.45491 1.56138 1.12024 1.24191 1.19620 0.86412 0.94271 0.84106 0.89517 1.20797 1.19603 0.95230 1.23307 0.90641 1.25064 0.97315 0.95728 0.96200 1.70392 1.34354 1.12034 1.30341 0.86284 0.80319 0.80130 0.79168 1.19822 1.20870 1.19848 1.23209 0.79955 0.76505 0.84409 1.92983 1.80846 1.62355 1.83047 1.93408 1.73357 1.77726 1.67298 1.93067 1.71793 1.73519 1.81633 1.21581 0.97579 0.81276 0.97512 0.87419 1.22153 0.94549 1.02471 1.03009 0.91642 0.90735 0.92064 0.76830 0.92563 0.88788 0.91409 0.77333 0.92022 0.90896 0.91109 0.92268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.63 9.37 37.16 0.35 -1.28 16 2 C 0.13 1.10 3.23 -68.40 -0.22 0.88 16 3 H 0.10 0.54 8.08 -51.93 -0.42 0.12 16 4 N -0.71 -7.22 4.91 -54.79 -0.27 -7.49 16 5 C 0.52 7.03 6.81 -11.73 -0.08 6.95 16 6 O -0.55 -9.11 17.01 5.55 0.09 -9.01 16 7 C 0.15 2.20 2.89 -68.90 -0.20 2.00 16 8 H 0.10 1.26 7.80 -51.93 -0.41 0.86 16 9 C -0.13 -2.08 7.58 37.16 0.28 -1.80 16 10 N -0.63 -8.99 2.53 -164.70 -0.42 -9.41 16 11 C 0.71 13.20 7.61 -86.92 -0.66 12.54 16 12 O -0.57 -12.50 11.03 5.28 0.06 -12.44 16 13 N -0.72 -13.76 4.91 -59.81 -0.29 -14.05 16 14 C 0.26 6.18 2.23 -69.08 -0.15 6.03 16 15 H 0.09 2.32 7.51 -51.93 -0.39 1.93 16 16 C -0.55 -13.36 8.46 -34.44 -0.29 -13.65 16 17 H 0.08 1.70 7.74 -52.48 -0.41 1.29 16 18 C 0.07 1.65 5.20 -17.82 -0.09 1.56 16 19 N -0.84 -22.31 9.50 55.43 0.53 -21.79 16 20 Si 0.91 19.35 29.54 -169.99 -5.02 14.33 16 21 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 22 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 23 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 24 C 0.42 10.25 2.81 37.16 0.10 10.35 16 25 F -0.21 -4.97 16.94 2.25 0.04 -4.93 16 26 F -0.14 -3.68 12.91 2.25 0.03 -3.65 16 27 F -0.22 -5.35 15.88 2.25 0.04 -5.32 16 28 C 0.13 1.30 2.62 -67.52 -0.18 1.12 16 29 H 0.11 1.07 5.58 -51.93 -0.29 0.78 16 30 C -0.16 -1.42 9.05 37.16 0.34 -1.09 16 31 H 0.06 0.85 7.99 -51.93 -0.42 0.43 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.40 3.43 8.80 -40.82 -0.36 3.07 16 35 H 0.06 0.85 7.59 -51.93 -0.39 0.46 16 36 H 0.09 1.67 6.54 -51.93 -0.34 1.33 16 37 H 0.07 1.21 7.19 -51.93 -0.37 0.84 16 38 H 0.39 6.34 6.07 -40.82 -0.25 6.09 16 39 H 0.27 6.83 8.31 -40.82 -0.34 6.50 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.54 6.77 -51.92 -0.35 0.18 16 LS Contribution 342.86 15.07 5.17 5.17 Total: -1.00 -30.59 342.86 -6.07 -36.66 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -5.22 Total: 8.33 kcal Atomic # 6 Polarization: 24.43 SS G_CDS: -0.81 Total: 23.62 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: -0.45 Total: -52.74 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: 0.15 Total: -21.46 kcal Atomic # 9 Polarization: -14.01 SS G_CDS: 0.10 Total: -13.91 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.02 Total: 14.33 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.59 -6.07 -36.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932896751.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.580 kcal (2) G-P(sol) polarization free energy of solvation -30.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds