Wall clock time and date at job start Tue Mar 31 2020 20:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.17220 * 2 1 4 4 N 1.45640 * 109.22007 * 240.63924 * 2 1 3 5 5 C 1.33381 * 124.59031 * 261.54543 * 4 2 1 6 6 O 1.21284 * 118.49261 * 175.41439 * 5 4 2 7 7 C 1.50436 * 123.02345 * 355.69819 * 5 4 2 8 8 H 1.08996 * 109.56931 * 252.89331 * 7 5 4 9 9 C 1.52999 * 109.57150 * 132.52999 * 7 5 4 10 10 N 1.47064 * 108.88815 * 12.71366 * 7 5 4 11 11 C 1.34773 * 121.36775 * 137.28548 * 10 7 5 12 12 O 1.21594 * 119.99781 * 355.00787 * 11 10 7 13 13 N 1.34776 * 120.00025 * 175.01371 * 11 10 7 14 14 C 1.46495 * 119.99790 * 185.08214 * 13 11 10 15 15 H 1.08997 * 109.47837 * 324.99794 * 14 13 11 16 16 C 1.50705 * 109.47310 * 204.99934 * 14 13 11 17 17 H 1.08004 * 119.99245 * 0.02562 * 16 14 13 18 18 C 1.37876 * 120.00381 * 180.02562 * 16 14 13 19 19 N 1.31516 * 119.99667 * 0.02562 * 18 16 14 20 20 Si 1.86801 * 119.99853 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47057 * 60.00441 * 20 18 16 22 22 H 1.48505 * 109.46912 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47218 * 299.99878 * 20 18 16 24 24 C 1.53000 * 109.47122 * 85.00196 * 14 13 11 25 25 F 1.39901 * 109.47302 * 59.99535 * 24 14 13 26 26 F 1.39905 * 109.47062 * 179.97438 * 24 14 13 27 27 F 1.39907 * 109.46955 * 299.99677 * 24 14 13 28 28 C 1.47273 * 117.27605 * 317.24227 * 10 7 5 29 29 H 1.09007 * 109.74880 * 181.21622 * 28 10 7 30 30 C 1.52995 * 109.72069 * 301.84513 * 28 10 7 31 31 H 1.09004 * 109.47064 * 179.36185 * 1 2 3 32 32 H 1.08998 * 109.47288 * 299.35956 * 1 2 3 33 33 H 1.08997 * 109.47159 * 59.36260 * 1 2 3 34 34 H 0.96998 * 117.70807 * 81.56432 * 4 2 1 35 35 H 1.09000 * 109.46879 * 51.01819 * 9 7 5 36 36 H 1.08999 * 109.47232 * 171.01545 * 9 7 5 37 37 H 1.09002 * 109.47309 * 291.01960 * 9 7 5 38 38 H 0.97003 * 120.00010 * 5.08218 * 13 11 10 39 39 H 0.97006 * 119.99610 * 180.02562 * 19 18 16 40 40 H 1.08997 * 109.47205 * 178.73309 * 30 28 10 41 41 H 1.08997 * 109.47593 * 298.73883 * 30 28 10 42 42 H 1.09009 * 109.46890 * 58.73522 * 30 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8880 1.0296 0.0000 4 7 2.0095 -0.6743 -1.1986 5 6 2.4112 -1.9454 -1.2429 6 8 2.7101 -2.4206 -2.3180 7 6 2.5047 -2.8187 -0.0216 8 1 3.5521 -2.9713 0.2388 9 6 1.8425 -4.1686 -0.3047 10 7 1.8120 -2.1545 1.0928 11 6 1.0080 -2.8415 1.9283 12 8 0.7710 -4.0151 1.7159 13 7 0.4666 -2.2277 2.9990 14 6 -0.3159 -2.9994 3.9677 15 1 -0.8689 -3.7815 3.4475 16 6 -1.2835 -2.0852 4.6742 17 1 -1.3128 -1.0344 4.4261 18 6 -2.1312 -2.5901 5.6373 19 7 -2.0950 -3.8695 5.9397 20 14 -3.3299 -1.4566 6.5135 21 1 -4.2439 -0.8390 5.5193 22 1 -4.1232 -2.2389 7.4953 23 1 -2.5761 -0.3913 7.2219 24 6 0.6253 -3.6357 4.9924 25 9 1.3351 -2.6320 5.6601 26 9 -0.1220 -4.3723 5.9178 27 9 1.5235 -4.4845 4.3365 28 6 2.0336 -0.7081 1.2592 29 1 1.4828 -0.3487 2.1285 30 6 3.5271 -0.4325 1.4442 31 1 -0.3633 -1.0276 -0.0114 32 1 -0.3634 0.5038 0.8956 33 1 -0.3633 0.5237 -0.8842 34 1 2.0390 -0.1631 -2.0224 35 1 2.2415 -4.5817 -1.2311 36 1 2.0487 -4.8540 0.5173 37 1 0.7655 -4.0316 -0.4022 38 1 0.5950 -1.2749 3.1283 39 1 -2.6917 -4.2248 6.6170 40 1 3.6888 0.6407 1.5444 41 1 3.8816 -0.9388 2.3420 42 1 4.0750 -0.8032 0.5778 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932896751.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:55 Heat of formation + Delta-G solvation = -198.849519 kcal Electronic energy + Delta-G solvation = -32558.740624 eV Core-core repulsion = 27738.662814 eV Total energy + Delta-G solvation = -4820.077810 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 3.20 seconds Orbital eigenvalues (eV) -50.36976 -48.00594 -47.68259 -42.35656 -40.43027 -38.37148 -36.81934 -35.55865 -34.62638 -33.07997 -31.36632 -30.78821 -29.36951 -26.57534 -25.98921 -24.86930 -23.59271 -23.22188 -21.78368 -20.17260 -19.34480 -18.84064 -18.82260 -18.56923 -18.35908 -17.82277 -17.28061 -16.85795 -16.74400 -16.15456 -16.01447 -15.39785 -15.06380 -15.04004 -14.92602 -14.70031 -14.49256 -14.41903 -14.29076 -14.24918 -13.98286 -13.84297 -13.77537 -13.40649 -13.35186 -13.14699 -12.99407 -12.74935 -12.71330 -12.60883 -12.55071 -12.31355 -12.15077 -11.97382 -11.55212 -11.37547 -10.64049 -10.50252 -10.22464 -10.09497 -9.58557 -8.17245 -6.47954 1.32484 1.46128 1.51464 1.52063 1.60780 2.08497 2.16783 2.38821 2.58698 2.86505 2.98903 3.36386 3.46913 3.79575 3.83526 3.88897 3.95916 4.01396 4.15836 4.21603 4.35402 4.38383 4.65806 4.77513 4.84100 4.87051 4.89421 4.91334 4.94083 5.15934 5.26520 5.33186 5.38544 5.52470 5.56631 5.69205 5.78648 5.91678 6.16814 6.56685 7.01716 7.06915 7.22420 7.61802 8.74987 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.016467 B = 0.004429 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.920228 B = 6321.022055 C = 6986.323617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.133 3.867 3 H 0.147 0.853 4 N -0.695 5.695 5 C 0.522 3.478 6 O -0.582 6.582 7 C 0.152 3.848 8 H 0.113 0.887 9 C -0.118 4.118 10 N -0.622 5.622 11 C 0.706 3.294 12 O -0.609 6.609 13 N -0.715 5.715 14 C 0.272 3.728 15 H 0.046 0.954 16 C -0.557 4.557 17 H 0.095 0.905 18 C 0.016 3.984 19 N -0.875 5.875 20 Si 0.981 3.019 21 H -0.263 1.263 22 H -0.289 1.289 23 H -0.263 1.263 24 C 0.413 3.587 25 F -0.203 7.203 26 F -0.152 7.152 27 F -0.220 7.220 28 C 0.114 3.886 29 H 0.116 0.884 30 C -0.158 4.158 31 H 0.024 0.976 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.409 0.591 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.042 0.958 38 H 0.406 0.594 39 H 0.267 0.733 40 H 0.108 0.892 41 H 0.056 0.944 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.898 13.544 -8.131 17.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.027 3.973 3 H 0.164 0.836 4 N -0.345 5.345 5 C 0.307 3.693 6 O -0.462 6.462 7 C 0.045 3.955 8 H 0.130 0.870 9 C -0.175 4.175 10 N -0.362 5.362 11 C 0.408 3.592 12 O -0.488 6.488 13 N -0.371 5.371 14 C 0.164 3.836 15 H 0.064 0.936 16 C -0.594 4.594 17 H 0.113 0.887 18 C -0.190 4.190 19 N -0.509 5.509 20 Si 0.805 3.195 21 H -0.187 1.187 22 H -0.215 1.215 23 H -0.188 1.188 24 C 0.356 3.644 25 F -0.184 7.184 26 F -0.133 7.133 27 F -0.202 7.202 28 C 0.011 3.989 29 H 0.133 0.867 30 C -0.216 4.216 31 H 0.043 0.957 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.247 0.753 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.061 0.939 38 H 0.245 0.755 39 H 0.077 0.923 40 H 0.126 0.874 41 H 0.075 0.925 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.800 12.152 -8.465 16.738 hybrid contribution -0.470 0.162 0.646 0.815 sum 7.330 12.314 -7.820 16.325 Atomic orbital electron populations 1.22292 0.94832 1.01351 1.04209 1.21609 0.94494 0.98226 0.82933 0.83556 1.45342 1.64161 1.11087 1.13960 1.20268 0.75906 0.83086 0.90017 1.90745 1.52091 1.72861 1.30458 1.21115 0.98613 0.92996 0.82745 0.86964 1.21836 0.99743 0.94417 1.01544 1.47429 1.48900 1.09499 1.30329 1.16028 0.78783 0.84477 0.79955 1.90941 1.65880 1.16639 1.75389 1.45158 1.55894 1.12428 1.23661 1.19157 0.86522 0.93678 0.84221 0.93611 1.21167 1.19295 0.96049 1.22915 0.88737 1.25974 0.98991 0.96968 0.97033 1.70539 1.35396 1.13947 1.31046 0.85241 0.78114 0.78174 0.77977 1.18728 1.21457 1.18810 1.23382 0.80050 0.76498 0.84452 1.92982 1.80648 1.61888 1.82932 1.93379 1.73836 1.78183 1.67914 1.93059 1.71841 1.73707 1.81636 1.22030 0.99387 0.78540 0.98970 0.86683 1.22136 0.92554 1.04623 1.02237 0.95659 0.89551 0.90444 0.75336 0.91926 0.90928 0.93867 0.75511 0.92297 0.87374 0.92464 0.92496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.75 9.37 71.98 0.67 -2.08 16 2 C 0.13 1.74 3.23 45.15 0.15 1.89 16 3 H 0.15 0.68 8.08 -2.39 -0.02 0.66 16 4 N -0.69 -12.05 4.91 -446.42 -2.19 -14.24 16 5 C 0.52 13.47 6.81 87.79 0.60 14.07 16 6 O -0.58 -18.88 17.01 -3.04 -0.05 -18.93 16 7 C 0.15 4.26 2.89 44.05 0.13 4.39 16 8 H 0.11 2.83 7.80 -2.39 -0.02 2.81 16 9 C -0.12 -3.97 7.58 71.98 0.55 -3.43 16 10 N -0.62 -17.26 2.53 -793.25 -2.00 -19.26 16 11 C 0.71 26.68 7.61 179.06 1.36 28.05 16 12 O -0.61 -28.17 11.03 -4.01 -0.04 -28.21 16 13 N -0.72 -27.10 4.91 -461.41 -2.26 -29.36 16 14 C 0.27 13.07 2.23 44.25 0.10 13.17 16 15 H 0.05 2.59 7.51 -2.39 -0.02 2.58 16 16 C -0.56 -26.67 8.46 25.60 0.22 -26.45 16 17 H 0.09 4.05 7.74 -2.91 -0.02 4.03 16 18 C 0.02 0.78 5.20 84.65 0.44 1.22 16 19 N -0.88 -47.49 9.50 21.45 0.20 -47.28 16 20 Si 0.98 38.88 29.54 68.60 2.03 40.91 16 21 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 22 H -0.29 -11.62 7.11 99.48 0.71 -10.91 16 23 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 24 C 0.41 20.70 2.81 71.98 0.20 20.90 16 25 F -0.20 -9.48 16.94 44.97 0.76 -8.72 16 26 F -0.15 -8.40 12.91 44.97 0.58 -7.82 16 27 F -0.22 -11.11 15.88 44.97 0.71 -10.39 16 28 C 0.11 2.02 2.62 44.84 0.12 2.13 16 29 H 0.12 1.90 5.58 -2.38 -0.01 1.88 16 30 C -0.16 -2.15 9.05 71.98 0.65 -1.50 16 31 H 0.02 0.62 7.99 -2.39 -0.02 0.60 16 32 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.08 1.02 8.14 -2.39 -0.02 1.01 16 34 H 0.41 5.63 8.80 -92.71 -0.82 4.81 16 35 H 0.06 1.98 7.59 -2.39 -0.02 1.96 16 36 H 0.07 2.75 6.54 -2.39 -0.02 2.73 16 37 H 0.04 1.64 7.19 -2.39 -0.02 1.62 16 38 H 0.41 12.53 6.07 -92.71 -0.56 11.97 16 39 H 0.27 13.87 8.31 -92.70 -0.77 13.10 16 40 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.06 0.83 6.77 -2.38 -0.02 0.81 16 Total: -1.00 -69.47 342.86 2.63 -66.84 By element: Atomic # 1 Polarization: 24.39 SS G_CDS: -0.28 Total: 24.11 kcal Atomic # 6 Polarization: 47.18 SS G_CDS: 5.18 Total: 52.36 kcal Atomic # 7 Polarization: -103.89 SS G_CDS: -6.26 Total: -110.15 kcal Atomic # 8 Polarization: -47.04 SS G_CDS: -0.10 Total: -47.14 kcal Atomic # 9 Polarization: -28.99 SS G_CDS: 2.06 Total: -26.93 kcal Atomic # 14 Polarization: 38.88 SS G_CDS: 2.03 Total: 40.91 kcal Total: -69.47 2.63 -66.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932896751.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.013 kcal (2) G-P(sol) polarization free energy of solvation -69.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.20 seconds