Wall clock time and date at job start Tue Mar 31 2020 21:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.46899 * 2 1 4 4 C 1.46764 * 124.34835 * 89.99837 * 3 2 1 5 5 C 1.54476 * 105.47461 * 163.00469 * 4 3 2 6 6 H 1.09003 * 110.97255 * 143.57338 * 5 4 3 7 7 C 1.53000 * 110.97050 * 267.30061 * 5 4 3 8 8 N 1.46498 * 109.47382 * 185.00037 * 7 5 4 9 9 C 1.34776 * 120.00117 * 180.02562 * 8 7 5 10 10 O 1.21582 * 120.00182 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99760 * 180.02562 * 9 8 7 12 12 C 1.46505 * 120.00077 * 179.97438 * 11 9 8 13 13 H 1.09011 * 109.46680 * 34.99533 * 12 11 9 14 14 C 1.50698 * 109.47424 * 154.99676 * 12 11 9 15 15 H 1.08003 * 119.99648 * 5.39265 * 14 12 11 16 16 C 1.37869 * 120.00048 * 185.39143 * 14 12 11 17 17 N 1.31514 * 120.00327 * 20.91610 * 16 14 12 18 18 Si 1.86803 * 120.00099 * 200.91511 * 16 14 12 19 19 H 1.48499 * 109.47073 * 180.02562 * 18 16 14 20 20 H 1.48507 * 109.46941 * 300.00043 * 18 16 14 21 21 H 1.48497 * 109.47065 * 59.99709 * 18 16 14 22 22 C 1.53003 * 109.47068 * 275.00143 * 12 11 9 23 23 F 1.39899 * 109.46702 * 294.83158 * 22 12 11 24 24 F 1.39899 * 109.46955 * 54.82938 * 22 12 11 25 25 F 1.39893 * 109.47069 * 174.83082 * 22 12 11 26 26 C 1.54626 * 101.76311 * 25.41479 * 5 4 3 27 27 C 1.34416 * 124.35376 * 270.02349 * 3 2 1 28 28 O 1.21287 * 124.93704 * 0.38730 * 27 3 2 29 29 H 1.08996 * 109.47399 * 299.99591 * 1 2 3 30 30 H 1.08999 * 109.47331 * 59.99994 * 1 2 3 31 31 H 1.09000 * 109.47124 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47156 * 240.00337 * 2 1 3 33 33 H 1.08993 * 109.46918 * 119.99863 * 2 1 3 34 34 H 1.09000 * 110.24163 * 44.00367 * 4 3 2 35 35 H 1.09000 * 110.24943 * 282.00720 * 4 3 2 36 36 H 1.09002 * 109.47549 * 64.99674 * 7 5 4 37 37 H 1.09004 * 109.47053 * 305.00107 * 7 5 4 38 38 H 0.97002 * 119.99724 * 359.97438 * 8 7 5 39 39 H 0.97002 * 120.00081 * 359.97438 * 11 9 8 40 40 H 0.97005 * 119.99433 * 355.53321 * 17 16 14 41 41 H 1.09008 * 110.48330 * 93.88446 * 26 5 4 42 42 H 1.09000 * 110.48895 * 216.52024 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2943 2.1620 1.2117 5 6 3.1738 3.3445 0.7487 6 1 2.9304 4.2518 1.3016 7 6 4.6601 3.0069 0.8832 8 7 5.4611 4.1875 0.5502 9 6 6.8065 4.1247 0.5991 10 8 7.3555 3.0884 0.9201 11 7 7.5433 5.2110 0.2932 12 6 9.0058 5.1429 0.3470 13 1 9.3352 4.1521 0.0339 14 6 9.5913 6.1815 -0.5748 15 1 8.9433 6.8846 -1.0769 16 6 10.9540 6.2340 -0.7771 17 7 11.6974 5.1787 -0.5252 18 14 11.7447 7.8040 -1.4091 19 1 13.2100 7.6020 -1.5409 20 1 11.1716 8.1477 -2.7354 21 1 11.4809 8.9102 -0.4542 22 6 9.4765 5.4081 1.7785 23 9 9.1568 6.7216 2.1386 24 9 8.8411 4.5177 2.6506 25 9 10.8616 5.2274 1.8550 26 6 2.7686 3.4757 -0.7377 27 6 2.2707 2.0966 -1.1097 28 8 2.1210 1.6946 -2.2442 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8900 34 1 2.8326 1.5532 1.9381 35 1 1.3636 2.5305 1.6432 36 1 4.9111 2.1936 0.2023 37 1 4.8720 2.7013 1.9078 38 1 5.0231 5.0141 0.2937 39 1 7.1054 6.0378 0.0375 40 1 11.2972 4.3853 -0.1362 41 1 1.9733 4.2123 -0.8527 42 1 3.6315 3.7467 -1.3460 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932896967.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:09 Heat of formation + Delta-G solvation = -221.718146 kcal Electronic energy + Delta-G solvation = -30191.191792 eV Core-core repulsion = 25370.122324 eV Total energy + Delta-G solvation = -4821.069468 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.76784 -46.30225 -46.23810 -40.89879 -39.42176 -37.02931 -35.55470 -34.75437 -33.40566 -32.58740 -30.13287 -28.54964 -27.92531 -25.62931 -24.46417 -23.61576 -21.93516 -21.18529 -20.48174 -19.62080 -18.47677 -17.55896 -17.21444 -17.12678 -16.95189 -16.68938 -16.14203 -15.84564 -15.31901 -15.11630 -14.42286 -14.16300 -13.97636 -13.89567 -13.79211 -13.56924 -13.39094 -13.18880 -13.11632 -12.89418 -12.78083 -12.73112 -12.57197 -12.44597 -12.31571 -12.25925 -12.02886 -11.75485 -11.47948 -11.32687 -11.26814 -11.03740 -10.80606 -10.21357 -10.00055 -9.74705 -9.48998 -9.07770 -8.94609 -8.45011 -8.35671 -6.75352 -4.51567 2.35813 2.67179 2.98971 3.30886 3.36876 3.54289 3.62082 3.99684 4.04354 4.19565 4.27536 4.30592 4.51787 4.67123 4.72882 4.81158 4.92486 4.99045 5.04434 5.11402 5.16685 5.32578 5.34940 5.42394 5.47166 5.53083 5.59228 5.65981 5.71799 5.77848 5.83253 6.23309 6.55809 6.62353 6.81089 7.02041 7.16191 7.50718 7.92750 8.08050 8.41515 8.50963 9.04187 9.20509 10.61622 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.021678 B = 0.002597 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.317092 B =10779.668424 C =11363.414752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.121 3.879 3 N -0.621 5.621 4 C 0.112 3.888 5 C -0.113 4.113 6 H 0.107 0.893 7 C 0.149 3.851 8 N -0.752 5.752 9 C 0.699 3.301 10 O -0.585 6.585 11 N -0.720 5.720 12 C 0.252 3.748 13 H 0.079 0.921 14 C -0.638 4.638 15 H 0.073 0.927 16 C 0.039 3.961 17 N -0.856 5.856 18 Si 1.072 2.928 19 H -0.279 1.279 20 H -0.284 1.284 21 H -0.281 1.281 22 C 0.414 3.586 23 F -0.195 7.195 24 F -0.206 7.206 25 F -0.178 7.178 26 C -0.154 4.154 27 C 0.519 3.481 28 O -0.531 6.531 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.394 0.606 39 H 0.397 0.603 40 H 0.279 0.721 41 H 0.107 0.893 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.546 -2.949 4.586 21.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.001 4.001 3 N -0.356 5.356 4 C -0.012 4.012 5 C -0.132 4.132 6 H 0.125 0.875 7 C 0.024 3.976 8 N -0.409 5.409 9 C 0.399 3.601 10 O -0.462 6.462 11 N -0.372 5.372 12 C 0.145 3.855 13 H 0.096 0.904 14 C -0.674 4.674 15 H 0.091 0.909 16 C -0.173 4.173 17 N -0.486 5.486 18 Si 0.898 3.102 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.207 1.207 22 C 0.357 3.643 23 F -0.177 7.177 24 F -0.188 7.188 25 F -0.160 7.160 26 C -0.194 4.194 27 C 0.307 3.693 28 O -0.408 6.408 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.227 0.773 39 H 0.230 0.770 40 H 0.091 0.909 41 H 0.125 0.875 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -18.649 -3.616 3.844 19.381 hybrid contribution -1.871 0.163 0.760 2.026 sum -20.520 -3.453 4.604 21.312 Atomic orbital electron populations 1.22156 0.95793 1.02383 1.02367 1.21359 0.94291 0.81073 1.03389 1.48338 1.66168 1.13859 1.07261 1.22066 0.99148 0.92445 0.87548 1.22443 0.94987 0.99603 0.96208 0.87463 1.21079 0.86956 0.87957 1.01561 1.45003 1.04870 1.14897 1.76173 1.16048 0.81077 0.84571 0.78389 1.90919 1.70963 1.29870 1.54439 1.45076 1.07061 1.12712 1.72392 1.19605 0.76582 1.02238 0.87103 0.90363 1.21658 0.95199 1.18622 1.31926 0.90882 1.25997 0.93808 1.02282 0.95254 1.70750 1.41100 1.02603 1.34157 0.83500 0.76445 0.73960 0.76295 1.20364 1.21014 1.20720 1.23129 0.75498 0.73016 0.92615 1.93021 1.92670 1.38580 1.93449 1.93091 1.82369 1.69237 1.74055 1.93140 1.31077 1.94945 1.96822 1.22487 1.03917 0.96009 0.97018 1.20901 0.76444 0.87638 0.84337 1.90735 1.53501 1.75345 1.21180 0.92440 0.92286 0.91398 0.89955 0.90184 0.89657 0.90452 0.91618 0.91018 0.77256 0.76954 0.90903 0.87462 0.87406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.08 10.24 37.16 0.38 -0.70 16 2 C 0.12 0.91 6.65 -4.04 -0.03 0.88 16 3 N -0.62 -5.41 2.93 -172.42 -0.51 -5.92 16 4 C 0.11 0.66 6.90 -3.12 -0.02 0.64 16 5 C -0.11 -0.76 3.16 -88.99 -0.28 -1.04 16 6 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 7 C 0.15 1.63 4.96 -4.04 -0.02 1.61 16 8 N -0.75 -9.75 5.35 -65.22 -0.35 -10.10 16 9 C 0.70 13.33 7.98 -86.92 -0.69 12.64 16 10 O -0.58 -13.64 14.96 5.29 0.08 -13.57 16 11 N -0.72 -14.27 5.03 -59.81 -0.30 -14.57 16 12 C 0.25 6.14 1.92 -69.08 -0.13 6.01 16 13 H 0.08 2.15 6.61 -51.92 -0.34 1.80 16 14 C -0.64 -16.27 8.21 -34.44 -0.28 -16.56 16 15 H 0.07 1.78 7.80 -52.48 -0.41 1.37 16 16 C 0.04 1.04 4.71 -17.82 -0.08 0.95 16 17 N -0.86 -24.34 12.44 55.43 0.69 -23.65 16 18 Si 1.07 23.44 29.95 -169.99 -5.09 18.35 16 19 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 20 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 21 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 22 C 0.41 10.22 2.82 37.16 0.10 10.33 16 23 F -0.20 -4.64 16.87 2.25 0.04 -4.60 16 24 F -0.21 -5.00 15.54 2.25 0.04 -4.97 16 25 F -0.18 -4.73 14.13 2.25 0.03 -4.70 16 26 C -0.15 -1.27 6.36 -26.75 -0.17 -1.44 16 27 C 0.52 5.95 8.02 -10.87 -0.09 5.86 16 28 O -0.53 -8.43 17.60 5.55 0.10 -8.33 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.75 7.93 -51.93 -0.41 0.33 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.09 0.45 7.88 -51.93 -0.41 0.04 16 35 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.87 8.12 -51.93 -0.42 0.44 16 37 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 38 H 0.39 3.82 8.49 -40.82 -0.35 3.47 16 39 H 0.40 6.67 8.54 -40.82 -0.35 6.32 16 40 H 0.28 8.08 6.04 -40.82 -0.25 7.84 16 41 H 0.11 0.66 8.14 -51.92 -0.42 0.24 16 42 H 0.11 1.02 7.76 -51.93 -0.40 0.62 16 LS Contribution 362.33 15.07 5.46 5.46 Total: -1.00 -34.75 362.33 -6.65 -41.40 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -5.52 Total: 6.00 kcal Atomic # 6 Polarization: 20.51 SS G_CDS: -1.32 Total: 19.19 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: -0.47 Total: -54.24 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: 0.18 Total: -21.89 kcal Atomic # 9 Polarization: -14.37 SS G_CDS: 0.10 Total: -14.27 kcal Atomic # 14 Polarization: 23.44 SS G_CDS: -5.09 Total: 18.35 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.75 -6.65 -41.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932896967.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -180.322 kcal (2) G-P(sol) polarization free energy of solvation -34.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds