Wall clock time and date at job start Tue Mar 31 2020 21:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.46899 * 2 1 4 4 C 1.46764 * 124.34835 * 89.99837 * 3 2 1 5 5 C 1.54476 * 105.47461 * 163.00469 * 4 3 2 6 6 H 1.09003 * 110.97255 * 143.57338 * 5 4 3 7 7 C 1.53000 * 110.97050 * 267.30061 * 5 4 3 8 8 N 1.46498 * 109.47382 * 185.00037 * 7 5 4 9 9 C 1.34776 * 120.00117 * 180.02562 * 8 7 5 10 10 O 1.21582 * 120.00182 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99760 * 180.02562 * 9 8 7 12 12 C 1.46505 * 120.00077 * 179.97438 * 11 9 8 13 13 H 1.09011 * 109.46680 * 34.99533 * 12 11 9 14 14 C 1.50698 * 109.47424 * 154.99676 * 12 11 9 15 15 H 1.08003 * 119.99648 * 5.39265 * 14 12 11 16 16 C 1.37869 * 120.00048 * 185.39143 * 14 12 11 17 17 N 1.31514 * 120.00327 * 20.91610 * 16 14 12 18 18 Si 1.86803 * 120.00099 * 200.91511 * 16 14 12 19 19 H 1.48499 * 109.47073 * 180.02562 * 18 16 14 20 20 H 1.48507 * 109.46941 * 300.00043 * 18 16 14 21 21 H 1.48497 * 109.47065 * 59.99709 * 18 16 14 22 22 C 1.53003 * 109.47068 * 275.00143 * 12 11 9 23 23 F 1.39899 * 109.46702 * 294.83158 * 22 12 11 24 24 F 1.39899 * 109.46955 * 54.82938 * 22 12 11 25 25 F 1.39893 * 109.47069 * 174.83082 * 22 12 11 26 26 C 1.54626 * 101.76311 * 25.41479 * 5 4 3 27 27 C 1.34416 * 124.35376 * 270.02349 * 3 2 1 28 28 O 1.21287 * 124.93704 * 0.38730 * 27 3 2 29 29 H 1.08996 * 109.47399 * 299.99591 * 1 2 3 30 30 H 1.08999 * 109.47331 * 59.99994 * 1 2 3 31 31 H 1.09000 * 109.47124 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47156 * 240.00337 * 2 1 3 33 33 H 1.08993 * 109.46918 * 119.99863 * 2 1 3 34 34 H 1.09000 * 110.24163 * 44.00367 * 4 3 2 35 35 H 1.09000 * 110.24943 * 282.00720 * 4 3 2 36 36 H 1.09002 * 109.47549 * 64.99674 * 7 5 4 37 37 H 1.09004 * 109.47053 * 305.00107 * 7 5 4 38 38 H 0.97002 * 119.99724 * 359.97438 * 8 7 5 39 39 H 0.97002 * 120.00081 * 359.97438 * 11 9 8 40 40 H 0.97005 * 119.99433 * 355.53321 * 17 16 14 41 41 H 1.09008 * 110.48330 * 93.88446 * 26 5 4 42 42 H 1.09000 * 110.48895 * 216.52024 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2943 2.1620 1.2117 5 6 3.1738 3.3445 0.7487 6 1 2.9304 4.2518 1.3016 7 6 4.6601 3.0069 0.8832 8 7 5.4611 4.1875 0.5502 9 6 6.8065 4.1247 0.5991 10 8 7.3555 3.0884 0.9201 11 7 7.5433 5.2110 0.2932 12 6 9.0058 5.1429 0.3470 13 1 9.3352 4.1521 0.0339 14 6 9.5913 6.1815 -0.5748 15 1 8.9433 6.8846 -1.0769 16 6 10.9540 6.2340 -0.7771 17 7 11.6974 5.1787 -0.5252 18 14 11.7447 7.8040 -1.4091 19 1 13.2100 7.6020 -1.5409 20 1 11.1716 8.1477 -2.7354 21 1 11.4809 8.9102 -0.4542 22 6 9.4765 5.4081 1.7785 23 9 9.1568 6.7216 2.1386 24 9 8.8411 4.5177 2.6506 25 9 10.8616 5.2274 1.8550 26 6 2.7686 3.4757 -0.7377 27 6 2.2707 2.0966 -1.1097 28 8 2.1210 1.6946 -2.2442 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8900 34 1 2.8326 1.5532 1.9381 35 1 1.3636 2.5305 1.6432 36 1 4.9111 2.1936 0.2023 37 1 4.8720 2.7013 1.9078 38 1 5.0231 5.0141 0.2937 39 1 7.1054 6.0378 0.0375 40 1 11.2972 4.3853 -0.1362 41 1 1.9733 4.2123 -0.8527 42 1 3.6315 3.7467 -1.3460 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932896967.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:07 Heat of formation + Delta-G solvation = -247.466027 kcal Electronic energy + Delta-G solvation = -30192.308303 eV Core-core repulsion = 25370.122324 eV Total energy + Delta-G solvation = -4822.185980 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -50.77278 -48.30378 -48.24887 -41.69860 -40.87710 -37.99111 -36.90883 -36.13591 -34.69983 -34.12651 -31.02421 -29.86802 -28.92379 -26.57611 -26.49034 -24.26685 -23.73491 -22.05268 -21.90124 -20.48502 -20.06668 -19.35594 -19.01796 -18.87515 -18.38097 -17.91926 -17.23516 -16.75285 -16.53613 -16.30771 -15.72267 -15.60774 -15.28839 -15.18523 -15.00930 -14.95608 -14.80599 -14.73694 -14.56840 -14.52200 -14.45800 -14.30419 -14.06820 -13.94155 -13.48763 -13.27505 -12.99048 -12.90753 -12.66664 -12.52403 -12.40486 -12.11376 -11.91655 -11.90956 -11.42727 -11.36246 -10.87072 -10.47056 -10.40871 -9.87359 -9.74244 -8.83730 -6.60364 1.50085 1.56354 1.63684 1.65024 1.85050 2.00144 2.06166 2.30463 2.50913 2.93003 3.14171 3.34984 3.44612 3.48542 3.61842 3.63073 3.81088 3.93378 4.11295 4.25886 4.38190 4.47103 4.56977 4.61919 4.63775 4.68234 4.75350 4.83304 4.88013 4.96717 5.11250 5.25246 5.32417 5.34840 5.46771 5.59987 5.98762 6.09988 6.10381 6.31973 7.08808 7.11804 7.20572 7.58082 8.51876 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.021678 B = 0.002597 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.317092 B =10779.668424 C =11363.414752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.112 3.888 3 N -0.619 5.619 4 C 0.109 3.891 5 C -0.095 4.095 6 H 0.147 0.853 7 C 0.147 3.853 8 N -0.726 5.726 9 C 0.694 3.306 10 O -0.632 6.632 11 N -0.715 5.715 12 C 0.258 3.742 13 H 0.041 0.959 14 C -0.640 4.640 15 H 0.088 0.912 16 C -0.007 4.007 17 N -0.886 5.886 18 Si 1.115 2.885 19 H -0.287 1.287 20 H -0.260 1.260 21 H -0.266 1.266 22 C 0.415 3.585 23 F -0.187 7.187 24 F -0.204 7.204 25 F -0.191 7.191 26 C -0.148 4.148 27 C 0.502 3.498 28 O -0.591 6.591 29 H 0.073 0.927 30 H 0.035 0.965 31 H 0.080 0.920 32 H 0.057 0.943 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.112 0.888 36 H 0.037 0.963 37 H 0.072 0.928 38 H 0.414 0.586 39 H 0.413 0.587 40 H 0.262 0.738 41 H 0.136 0.864 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.797 -0.916 5.817 23.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.009 4.009 3 N -0.352 5.352 4 C -0.013 4.013 5 C -0.113 4.113 6 H 0.165 0.835 7 C 0.022 3.978 8 N -0.383 5.383 9 C 0.394 3.606 10 O -0.513 6.513 11 N -0.369 5.369 12 C 0.149 3.851 13 H 0.058 0.942 14 C -0.676 4.676 15 H 0.106 0.894 16 C -0.213 4.213 17 N -0.517 5.517 18 Si 0.935 3.065 19 H -0.212 1.212 20 H -0.184 1.184 21 H -0.191 1.191 22 C 0.359 3.641 23 F -0.168 7.168 24 F -0.185 7.185 25 F -0.173 7.173 26 C -0.188 4.188 27 C 0.291 3.709 28 O -0.472 6.472 29 H 0.092 0.908 30 H 0.054 0.946 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.123 0.877 34 H 0.115 0.885 35 H 0.130 0.870 36 H 0.056 0.944 37 H 0.090 0.910 38 H 0.252 0.748 39 H 0.250 0.750 40 H 0.073 0.927 41 H 0.154 0.846 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -20.999 -1.553 5.111 21.668 hybrid contribution -1.251 -0.558 0.434 1.437 sum -22.250 -2.111 5.545 23.027 Atomic orbital electron populations 1.22078 0.94602 1.03190 1.01936 1.21504 0.95280 0.80746 1.03364 1.48543 1.64791 1.14208 1.07675 1.22348 1.00632 0.91903 0.86402 1.22414 0.91641 1.01643 0.95639 0.83533 1.21247 0.89407 0.86396 1.00701 1.44806 1.02650 1.16543 1.74346 1.16284 0.82779 0.83514 0.78073 1.90891 1.72399 1.31502 1.56464 1.44814 1.05405 1.13896 1.72779 1.19177 0.79149 1.00034 0.86782 0.94165 1.21962 0.95445 1.18493 1.31655 0.89437 1.27422 0.95019 1.03973 0.94934 1.70875 1.41444 1.02999 1.36427 0.82976 0.75269 0.70943 0.77316 1.21234 1.18440 1.19143 1.23053 0.74913 0.73337 0.92791 1.93027 1.92530 1.37888 1.93389 1.93090 1.82220 1.69260 1.73965 1.93116 1.32234 1.95059 1.96893 1.22502 1.04133 0.94631 0.97558 1.21567 0.76096 0.89134 0.84090 1.90693 1.56243 1.76752 1.23510 0.90797 0.94581 0.90082 0.92470 0.87746 0.88523 0.87008 0.94444 0.90970 0.74844 0.75031 0.92682 0.84576 0.88895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 10.24 71.98 0.74 -1.09 16 2 C 0.11 1.60 6.65 86.38 0.57 2.18 16 3 N -0.62 -9.87 2.93 -817.99 -2.40 -12.26 16 4 C 0.11 0.89 6.90 86.83 0.60 1.49 16 5 C -0.09 -0.93 3.16 -9.74 -0.03 -0.96 16 6 H 0.15 0.46 8.14 -2.39 -0.02 0.44 16 7 C 0.15 2.93 4.96 86.38 0.43 3.36 16 8 N -0.73 -17.41 5.35 -478.54 -2.56 -19.97 16 9 C 0.69 26.08 7.98 179.05 1.43 27.51 16 10 O -0.63 -30.02 14.96 -3.97 -0.06 -30.08 16 11 N -0.71 -27.74 5.03 -461.39 -2.32 -30.06 16 12 C 0.26 12.65 1.92 44.24 0.09 12.74 16 13 H 0.04 2.31 6.61 -2.38 -0.02 2.30 16 14 C -0.64 -32.22 8.21 25.60 0.21 -32.01 16 15 H 0.09 4.08 7.80 -2.91 -0.02 4.06 16 16 C -0.01 -0.39 4.71 84.65 0.40 0.01 16 17 N -0.89 -51.41 12.44 21.44 0.27 -51.14 16 18 Si 1.12 46.01 29.95 68.60 2.05 48.06 16 19 H -0.29 -12.15 7.11 99.48 0.71 -11.44 16 20 H -0.26 -9.66 7.11 99.48 0.71 -8.96 16 21 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 22 C 0.42 20.55 2.82 71.98 0.20 20.75 16 23 F -0.19 -8.62 16.87 44.97 0.76 -7.86 16 24 F -0.20 -9.91 15.54 44.97 0.70 -9.21 16 25 F -0.19 -10.33 14.13 44.97 0.64 -9.70 16 26 C -0.15 -2.11 6.36 30.58 0.19 -1.91 16 27 C 0.50 11.35 8.02 87.90 0.71 12.05 16 28 O -0.59 -19.64 17.60 -3.05 -0.05 -19.70 16 29 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.06 1.10 7.93 -2.38 -0.02 1.08 16 33 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.10 0.65 7.88 -2.39 -0.02 0.64 16 35 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 36 H 0.04 0.98 8.12 -2.39 -0.02 0.96 16 37 H 0.07 1.49 8.10 -2.39 -0.02 1.48 16 38 H 0.41 6.67 8.49 -92.71 -0.79 5.89 16 39 H 0.41 13.04 8.54 -92.71 -0.79 12.25 16 40 H 0.26 15.83 6.04 -92.70 -0.56 15.27 16 41 H 0.14 1.18 8.14 -2.38 -0.02 1.16 16 42 H 0.09 1.64 7.76 -2.39 -0.02 1.62 16 Total: -1.00 -79.87 362.33 2.27 -77.60 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: -0.29 Total: 20.20 kcal Atomic # 6 Polarization: 38.58 SS G_CDS: 5.53 Total: 44.12 kcal Atomic # 7 Polarization: -106.43 SS G_CDS: -7.01 Total: -113.44 kcal Atomic # 8 Polarization: -49.66 SS G_CDS: -0.11 Total: -49.77 kcal Atomic # 9 Polarization: -28.87 SS G_CDS: 2.09 Total: -26.77 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.05 Total: 48.06 kcal Total: -79.87 2.27 -77.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932896967.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.862 kcal (2) G-P(sol) polarization free energy of solvation -79.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -249.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -247.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds