Wall clock time and date at job start Tue Mar 31 2020 21:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47601 * 2 1 4 4 C 1.46768 * 124.34879 * 89.99607 * 3 2 1 5 5 C 1.54480 * 105.55098 * 197.08340 * 4 3 2 6 6 H 1.09001 * 110.96924 * 216.42557 * 5 4 3 7 7 C 1.53001 * 110.96983 * 92.65987 * 5 4 3 8 8 N 1.46500 * 109.46956 * 175.00184 * 7 5 4 9 9 C 1.34776 * 120.00068 * 180.02562 * 8 7 5 10 10 O 1.21590 * 119.99684 * 359.97438 * 9 8 7 11 11 N 1.34771 * 120.00259 * 180.02562 * 9 8 7 12 12 C 1.46506 * 120.00023 * 180.02562 * 11 9 8 13 13 H 1.08998 * 109.46648 * 324.99050 * 12 11 9 14 14 C 1.50705 * 109.46719 * 204.99711 * 12 11 9 15 15 H 1.07996 * 120.00299 * 359.97438 * 14 12 11 16 16 C 1.37880 * 119.99469 * 180.02562 * 14 12 11 17 17 N 1.31509 * 120.00293 * 359.97438 * 16 14 12 18 18 Si 1.86797 * 119.99553 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47229 * 89.99955 * 18 16 14 20 20 H 1.48507 * 109.46948 * 209.99550 * 18 16 14 21 21 H 1.48502 * 109.47189 * 329.99356 * 18 16 14 22 22 C 1.52996 * 109.47322 * 84.99762 * 12 11 9 23 23 F 1.39891 * 109.47271 * 59.99891 * 22 12 11 24 24 F 1.39902 * 109.47051 * 180.02562 * 22 12 11 25 25 F 1.39907 * 109.47001 * 299.99723 * 22 12 11 26 26 C 1.54631 * 101.76472 * 334.54015 * 5 4 3 27 27 C 1.34621 * 124.47196 * 270.02849 * 3 2 1 28 28 O 1.21286 * 124.90539 * 359.55259 * 27 3 2 29 29 H 1.08999 * 109.46773 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.46756 * 299.99998 * 1 2 3 31 31 H 1.08998 * 109.46730 * 59.99602 * 1 2 3 32 32 H 1.09002 * 109.47341 * 240.00121 * 2 1 3 33 33 H 1.08998 * 109.47560 * 120.00001 * 2 1 3 34 34 H 1.09002 * 110.24468 * 78.03845 * 4 3 2 35 35 H 1.09002 * 110.24463 * 316.12602 * 4 3 2 36 36 H 1.09001 * 109.46982 * 295.00095 * 7 5 4 37 37 H 1.08998 * 109.47052 * 55.00265 * 7 5 4 38 38 H 0.96999 * 120.00025 * 359.97438 * 8 7 5 39 39 H 0.96999 * 119.99834 * 359.97438 * 11 9 8 40 40 H 0.97000 * 119.99953 * 180.02562 * 17 16 14 41 41 H 1.09000 * 110.48694 * 143.47575 * 26 5 4 42 42 H 1.08994 * 110.49106 * 266.12244 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2945 2.1619 1.2117 5 6 2.3518 3.6353 0.7510 6 1 3.1112 4.1878 1.3043 7 6 0.9829 4.3050 0.8864 8 7 1.1003 5.7273 0.5555 9 6 0.0136 6.5230 0.6066 10 8 -1.0642 6.0602 0.9269 11 7 0.1215 7.8314 0.3017 12 6 -1.0596 8.6964 0.3578 13 1 -1.9383 8.1321 0.0453 14 6 -0.8645 9.8731 -0.5632 15 1 0.0481 9.9675 -1.1329 16 6 -1.8508 10.8299 -0.6776 17 7 -2.9618 10.7152 0.0166 18 14 -1.6093 12.2881 -1.8197 19 1 -2.1264 11.9502 -3.1702 20 1 -2.3468 13.4618 -1.2867 21 1 -0.1628 12.6118 -1.9102 22 6 -1.2577 9.1969 1.7900 23 9 -0.1299 9.9210 2.1910 24 9 -2.3859 10.0225 1.8436 25 9 -1.4388 8.1044 2.6450 26 6 2.7499 3.4854 -0.7357 27 6 2.2720 2.0997 -1.1098 28 8 2.1363 1.6946 -2.2449 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.2503 1.8640 1.6428 35 1 1.4942 2.0251 1.9391 36 1 0.2772 3.8304 0.2047 37 1 0.6261 4.1986 1.9109 38 1 1.9602 6.0966 0.3004 39 1 0.9812 8.2004 0.0459 40 1 -3.6558 11.3881 -0.0642 41 1 2.2481 4.2389 -1.3428 42 1 3.8312 3.5599 -0.8505 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932896968.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:13 Heat of formation + Delta-G solvation = -201.625317 kcal Electronic energy + Delta-G solvation = -30331.589788 eV Core-core repulsion = 25511.391611 eV Total energy + Delta-G solvation = -4820.198177 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.31870 -45.97214 -45.58632 -40.84011 -39.29545 -36.98075 -35.42311 -34.52913 -33.30551 -32.48861 -30.11225 -28.55661 -27.97843 -25.55948 -24.52114 -23.58856 -21.72274 -21.10610 -20.26031 -19.58269 -18.34161 -17.11922 -16.95220 -16.79180 -16.61519 -16.56279 -15.88491 -15.78213 -15.11463 -15.01030 -14.72905 -14.21253 -14.02989 -13.91327 -13.61957 -13.51581 -13.21163 -13.11937 -12.88326 -12.57875 -12.45718 -12.37112 -12.29015 -12.25239 -11.97653 -11.94988 -11.79748 -11.67214 -11.36892 -11.26792 -11.15619 -10.83749 -10.79091 -10.39492 -9.96316 -9.66422 -9.57958 -9.02338 -8.85029 -8.70592 -8.17383 -6.22972 -4.46820 2.38047 2.72232 3.09410 3.19274 3.25960 3.29045 3.76214 4.03895 4.09585 4.20497 4.32903 4.55095 4.61053 4.74919 4.84576 4.88197 4.94416 5.07430 5.09667 5.14874 5.22401 5.40012 5.41908 5.48945 5.61403 5.72990 5.83824 5.89270 5.90786 5.94735 6.23698 6.28314 6.70931 6.83816 6.84476 7.20062 7.36400 7.62551 7.67549 7.95938 8.49788 8.64264 9.14252 9.24818 10.68644 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.018893 B = 0.002742 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.654664 B =10210.106366 C =10772.072027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.123 3.877 3 N -0.622 5.622 4 C 0.111 3.889 5 C -0.113 4.113 6 H 0.107 0.893 7 C 0.150 3.850 8 N -0.754 5.754 9 C 0.699 3.301 10 O -0.583 6.583 11 N -0.726 5.726 12 C 0.262 3.738 13 H 0.085 0.915 14 C -0.552 4.552 15 H 0.077 0.923 16 C 0.065 3.935 17 N -0.839 5.839 18 Si 0.915 3.085 19 H -0.276 1.276 20 H -0.283 1.283 21 H -0.271 1.271 22 C 0.416 3.584 23 F -0.210 7.210 24 F -0.137 7.137 25 F -0.217 7.217 26 C -0.154 4.154 27 C 0.519 3.481 28 O -0.532 6.532 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.393 0.607 39 H 0.394 0.606 40 H 0.268 0.732 41 H 0.108 0.892 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.484 -15.047 3.415 19.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.002 3.998 3 N -0.358 5.358 4 C -0.013 4.013 5 C -0.132 4.132 6 H 0.125 0.875 7 C 0.025 3.975 8 N -0.411 5.411 9 C 0.398 3.602 10 O -0.460 6.460 11 N -0.378 5.378 12 C 0.156 3.844 13 H 0.103 0.897 14 C -0.589 4.589 15 H 0.095 0.905 16 C -0.144 4.144 17 N -0.473 5.473 18 Si 0.742 3.258 19 H -0.202 1.202 20 H -0.208 1.208 21 H -0.195 1.195 22 C 0.359 3.641 23 F -0.192 7.192 24 F -0.119 7.119 25 F -0.199 7.199 26 C -0.194 4.194 27 C 0.307 3.693 28 O -0.408 6.408 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.226 0.774 39 H 0.228 0.772 40 H 0.079 0.921 41 H 0.126 0.874 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 11.127 -15.669 3.191 19.481 hybrid contribution 0.819 1.227 -0.313 1.508 sum 11.946 -14.443 2.877 18.963 Atomic orbital electron populations 1.22176 0.95537 1.02375 1.02949 1.21329 0.94580 0.80984 1.02953 1.48400 1.66154 1.13948 1.07257 1.22061 1.02117 0.89475 0.87616 1.22443 0.98872 0.95757 0.96155 0.87472 1.21056 0.94836 0.80081 1.01531 1.45028 1.10732 1.08980 1.76391 1.16049 0.84027 0.81609 0.78479 1.90927 1.26269 1.74491 1.54346 1.45257 1.13406 1.06739 1.72421 1.19597 0.86482 0.90754 0.87554 0.89747 1.20878 1.04904 1.06666 1.26466 0.90486 1.25079 0.94996 0.98661 0.95678 1.70403 1.06100 1.35040 1.35715 0.86212 0.78578 0.80803 0.80221 1.20195 1.20817 1.19540 1.23185 0.74297 0.75378 0.91206 1.92979 1.54046 1.79598 1.92606 1.93403 1.50486 1.71815 1.96159 1.93071 1.95357 1.56253 1.75209 1.22482 1.03716 0.96118 0.97072 1.20976 0.76298 0.87714 0.84327 1.90730 1.53298 1.75641 1.21132 0.91439 0.92115 0.92062 0.90128 0.90372 0.90423 0.89731 0.91682 0.91089 0.77351 0.77239 0.92120 0.87373 0.87485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 10.24 37.16 0.38 -1.01 16 2 C 0.12 0.94 6.66 -4.04 -0.03 0.91 16 3 N -0.62 -5.48 2.94 -172.35 -0.51 -5.98 16 4 C 0.11 0.68 6.89 -3.12 -0.02 0.65 16 5 C -0.11 -0.78 3.16 -88.99 -0.28 -1.06 16 6 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 7 C 0.15 1.67 4.96 -4.04 -0.02 1.65 16 8 N -0.75 -9.91 5.35 -65.23 -0.35 -10.26 16 9 C 0.70 13.47 8.10 -86.92 -0.70 12.77 16 10 O -0.58 -13.82 14.92 5.29 0.08 -13.74 16 11 N -0.73 -14.47 4.99 -59.81 -0.30 -14.77 16 12 C 0.26 6.49 2.21 -69.08 -0.15 6.33 16 13 H 0.08 2.36 7.57 -51.93 -0.39 1.97 16 14 C -0.55 -13.97 8.47 -34.44 -0.29 -14.26 16 15 H 0.08 1.83 7.74 -52.49 -0.41 1.43 16 16 C 0.06 1.68 5.20 -17.82 -0.09 1.58 16 17 N -0.84 -22.99 9.50 55.43 0.53 -22.46 16 18 Si 0.92 20.01 29.54 -169.99 -5.02 14.99 16 19 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 20 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 21 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 22 C 0.42 10.63 2.81 37.16 0.10 10.74 16 23 F -0.21 -5.14 16.94 2.25 0.04 -5.10 16 24 F -0.14 -3.81 12.91 2.25 0.03 -3.78 16 25 F -0.22 -5.52 15.68 2.25 0.04 -5.49 16 26 C -0.15 -1.27 6.36 -26.74 -0.17 -1.44 16 27 C 0.52 5.98 8.03 -10.77 -0.09 5.89 16 28 O -0.53 -8.44 17.60 5.55 0.10 -8.35 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.69 7.93 -51.93 -0.41 0.28 16 33 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.08 0.47 7.88 -51.93 -0.41 0.06 16 36 H 0.06 0.87 8.12 -51.93 -0.42 0.45 16 37 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 38 H 0.39 3.87 8.49 -40.82 -0.35 3.52 16 39 H 0.39 6.63 8.55 -40.82 -0.35 6.29 16 40 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.11 1.03 7.76 -51.93 -0.40 0.62 16 42 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 362.22 15.07 5.46 5.46 Total: -1.00 -34.41 362.22 -6.93 -41.34 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -5.66 Total: 5.39 kcal Atomic # 6 Polarization: 24.11 SS G_CDS: -1.36 Total: 22.75 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: -0.63 Total: -53.48 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: 0.18 Total: -22.09 kcal Atomic # 9 Polarization: -14.47 SS G_CDS: 0.10 Total: -14.37 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.41 -6.93 -41.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932896968.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.283 kcal (2) G-P(sol) polarization free energy of solvation -34.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds