Wall clock time and date at job start Tue Mar 31 2020 21:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47601 * 2 1 4 4 C 1.46768 * 124.34879 * 89.99607 * 3 2 1 5 5 C 1.54480 * 105.55098 * 197.08340 * 4 3 2 6 6 H 1.09001 * 110.96924 * 216.42557 * 5 4 3 7 7 C 1.53001 * 110.96983 * 92.65987 * 5 4 3 8 8 N 1.46500 * 109.46956 * 175.00184 * 7 5 4 9 9 C 1.34776 * 120.00068 * 180.02562 * 8 7 5 10 10 O 1.21590 * 119.99684 * 359.97438 * 9 8 7 11 11 N 1.34771 * 120.00259 * 180.02562 * 9 8 7 12 12 C 1.46506 * 120.00023 * 180.02562 * 11 9 8 13 13 H 1.08998 * 109.46648 * 324.99050 * 12 11 9 14 14 C 1.50705 * 109.46719 * 204.99711 * 12 11 9 15 15 H 1.07996 * 120.00299 * 359.97438 * 14 12 11 16 16 C 1.37880 * 119.99469 * 180.02562 * 14 12 11 17 17 N 1.31509 * 120.00293 * 359.97438 * 16 14 12 18 18 Si 1.86797 * 119.99553 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47229 * 89.99955 * 18 16 14 20 20 H 1.48507 * 109.46948 * 209.99550 * 18 16 14 21 21 H 1.48502 * 109.47189 * 329.99356 * 18 16 14 22 22 C 1.52996 * 109.47322 * 84.99762 * 12 11 9 23 23 F 1.39891 * 109.47271 * 59.99891 * 22 12 11 24 24 F 1.39902 * 109.47051 * 180.02562 * 22 12 11 25 25 F 1.39907 * 109.47001 * 299.99723 * 22 12 11 26 26 C 1.54631 * 101.76472 * 334.54015 * 5 4 3 27 27 C 1.34621 * 124.47196 * 270.02849 * 3 2 1 28 28 O 1.21286 * 124.90539 * 359.55259 * 27 3 2 29 29 H 1.08999 * 109.46773 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.46756 * 299.99998 * 1 2 3 31 31 H 1.08998 * 109.46730 * 59.99602 * 1 2 3 32 32 H 1.09002 * 109.47341 * 240.00121 * 2 1 3 33 33 H 1.08998 * 109.47560 * 120.00001 * 2 1 3 34 34 H 1.09002 * 110.24468 * 78.03845 * 4 3 2 35 35 H 1.09002 * 110.24463 * 316.12602 * 4 3 2 36 36 H 1.09001 * 109.46982 * 295.00095 * 7 5 4 37 37 H 1.08998 * 109.47052 * 55.00265 * 7 5 4 38 38 H 0.96999 * 120.00025 * 359.97438 * 8 7 5 39 39 H 0.96999 * 119.99834 * 359.97438 * 11 9 8 40 40 H 0.97000 * 119.99953 * 180.02562 * 17 16 14 41 41 H 1.09000 * 110.48694 * 143.47575 * 26 5 4 42 42 H 1.08994 * 110.49106 * 266.12244 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2945 2.1619 1.2117 5 6 2.3518 3.6353 0.7510 6 1 3.1112 4.1878 1.3043 7 6 0.9829 4.3050 0.8864 8 7 1.1003 5.7273 0.5555 9 6 0.0136 6.5230 0.6066 10 8 -1.0642 6.0602 0.9269 11 7 0.1215 7.8314 0.3017 12 6 -1.0596 8.6964 0.3578 13 1 -1.9383 8.1321 0.0453 14 6 -0.8645 9.8731 -0.5632 15 1 0.0481 9.9675 -1.1329 16 6 -1.8508 10.8299 -0.6776 17 7 -2.9618 10.7152 0.0166 18 14 -1.6093 12.2881 -1.8197 19 1 -2.1264 11.9502 -3.1702 20 1 -2.3468 13.4618 -1.2867 21 1 -0.1628 12.6118 -1.9102 22 6 -1.2577 9.1969 1.7900 23 9 -0.1299 9.9210 2.1910 24 9 -2.3859 10.0225 1.8436 25 9 -1.4388 8.1044 2.6450 26 6 2.7499 3.4854 -0.7357 27 6 2.2720 2.0997 -1.1098 28 8 2.1363 1.6946 -2.2449 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.2503 1.8640 1.6428 35 1 1.4942 2.0251 1.9391 36 1 0.2772 3.8304 0.2047 37 1 0.6261 4.1986 1.9109 38 1 1.9602 6.0966 0.3004 39 1 0.9812 8.2004 0.0459 40 1 -3.6558 11.3881 -0.0642 41 1 2.2481 4.2389 -1.3428 42 1 3.8312 3.5599 -0.8505 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932896968.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:12 Heat of formation + Delta-G solvation = -227.044975 kcal Electronic energy + Delta-G solvation = -30332.692067 eV Core-core repulsion = 25511.391611 eV Total energy + Delta-G solvation = -4821.300456 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.37359 -48.00372 -47.68981 -41.64166 -40.76892 -37.93983 -36.67529 -36.02488 -34.57428 -34.08966 -31.08833 -29.95730 -28.89169 -26.68384 -26.36880 -24.28203 -23.49142 -21.93391 -21.80287 -20.43565 -19.88340 -18.85659 -18.74934 -18.53202 -18.01317 -17.66190 -17.30420 -16.83417 -16.55022 -16.33827 -16.17070 -15.34275 -15.10239 -15.06415 -14.91775 -14.79358 -14.58845 -14.42260 -14.33300 -14.25493 -14.18712 -14.02674 -13.96654 -13.83309 -13.21184 -13.11389 -13.00144 -12.76224 -12.63984 -12.56739 -12.35998 -12.19726 -12.02786 -11.95659 -11.56372 -11.26473 -10.83716 -10.66717 -10.29969 -9.77137 -9.69178 -8.19479 -6.50123 1.47718 1.48865 1.53209 1.59905 1.75768 2.10030 2.17036 2.38448 2.59710 2.96630 3.27283 3.38736 3.53487 3.67736 3.82890 3.91508 3.96903 4.13642 4.23627 4.25137 4.42318 4.48054 4.62452 4.66915 4.72220 4.75044 4.84403 4.88056 4.93483 4.98050 5.15226 5.25219 5.46165 5.53283 5.56584 5.63465 5.67636 6.12919 6.17130 6.55376 7.14659 7.18871 7.24694 7.69199 8.73242 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.018893 B = 0.002742 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.654664 B =10210.106366 C =10772.072027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.118 3.882 3 N -0.620 5.620 4 C 0.109 3.891 5 C -0.095 4.095 6 H 0.147 0.853 7 C 0.147 3.853 8 N -0.728 5.728 9 C 0.693 3.307 10 O -0.632 6.632 11 N -0.719 5.719 12 C 0.270 3.730 13 H 0.043 0.957 14 C -0.561 4.561 15 H 0.093 0.907 16 C 0.014 3.986 17 N -0.875 5.875 18 Si 0.983 3.017 19 H -0.272 1.272 20 H -0.285 1.285 21 H -0.257 1.257 22 C 0.414 3.586 23 F -0.202 7.202 24 F -0.152 7.152 25 F -0.218 7.218 26 C -0.148 4.148 27 C 0.502 3.498 28 O -0.590 6.590 29 H 0.084 0.916 30 H 0.062 0.938 31 H 0.026 0.974 32 H 0.066 0.934 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.093 0.907 36 H 0.036 0.964 37 H 0.069 0.931 38 H 0.414 0.586 39 H 0.411 0.589 40 H 0.268 0.732 41 H 0.093 0.907 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.404 -15.006 4.222 21.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.003 4.003 3 N -0.354 5.354 4 C -0.014 4.014 5 C -0.114 4.114 6 H 0.165 0.835 7 C 0.023 3.977 8 N -0.385 5.385 9 C 0.393 3.607 10 O -0.513 6.513 11 N -0.374 5.374 12 C 0.162 3.838 13 H 0.061 0.939 14 C -0.598 4.598 15 H 0.111 0.889 16 C -0.191 4.191 17 N -0.509 5.509 18 Si 0.806 3.194 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.180 1.180 22 C 0.357 3.643 23 F -0.184 7.184 24 F -0.133 7.133 25 F -0.200 7.200 26 C -0.188 4.188 27 C 0.292 3.708 28 O -0.471 6.471 29 H 0.103 0.897 30 H 0.081 0.919 31 H 0.045 0.955 32 H 0.085 0.915 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.111 0.889 36 H 0.054 0.946 37 H 0.088 0.912 38 H 0.251 0.749 39 H 0.248 0.752 40 H 0.078 0.922 41 H 0.111 0.889 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 14.138 -15.656 4.031 21.476 hybrid contribution -0.108 1.111 -0.504 1.225 sum 14.029 -14.545 3.527 20.514 Atomic orbital electron populations 1.22143 0.96175 1.03061 1.01266 1.21469 0.94015 0.80804 1.03995 1.48603 1.64733 1.14378 1.07650 1.22344 1.04379 0.88178 0.86452 1.22416 0.96811 0.96459 0.95709 0.83536 1.21213 0.97295 0.78623 1.00545 1.44813 1.09925 1.09219 1.74585 1.16287 0.84699 0.81599 0.78118 1.90896 1.28681 1.75269 1.56432 1.44963 1.12840 1.06815 1.72739 1.19141 0.86807 0.90863 0.86981 0.93921 1.21238 1.05479 1.06578 1.26459 0.88865 1.26000 0.94619 1.01483 0.97013 1.70539 1.07008 1.35991 1.37389 0.85165 0.79092 0.77089 0.78010 1.19786 1.21073 1.18037 1.23304 0.74077 0.75243 0.91673 1.92980 1.53428 1.79417 1.92559 1.93373 1.51404 1.72295 1.96264 1.93063 1.95384 1.56283 1.75299 1.22499 1.05270 0.93500 0.97498 1.21641 0.75927 0.89195 0.84084 1.90690 1.56020 1.76995 1.23432 0.89678 0.91894 0.95472 0.91521 0.86815 0.86725 0.88853 0.94564 0.91230 0.74902 0.75236 0.92218 0.88862 0.84476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.70 10.24 71.98 0.74 -1.97 16 2 C 0.12 1.66 6.66 86.38 0.58 2.24 16 3 N -0.62 -9.91 2.94 -817.66 -2.40 -12.31 16 4 C 0.11 0.92 6.89 86.83 0.60 1.52 16 5 C -0.10 -0.97 3.16 -9.73 -0.03 -1.00 16 6 H 0.15 0.51 8.14 -2.39 -0.02 0.49 16 7 C 0.15 3.05 4.96 86.38 0.43 3.48 16 8 N -0.73 -17.90 5.35 -478.54 -2.56 -20.46 16 9 C 0.69 26.55 8.10 179.06 1.45 28.00 16 10 O -0.63 -30.69 14.92 -4.00 -0.06 -30.75 16 11 N -0.72 -28.29 4.99 -461.40 -2.30 -30.60 16 12 C 0.27 13.52 2.21 44.24 0.10 13.62 16 13 H 0.04 2.51 7.57 -2.39 -0.02 2.49 16 14 C -0.56 -28.10 8.47 25.60 0.22 -27.89 16 15 H 0.09 4.26 7.74 -2.91 -0.02 4.24 16 16 C 0.01 0.73 5.20 84.66 0.44 1.17 16 17 N -0.88 -48.68 9.50 21.45 0.20 -48.47 16 18 Si 0.98 40.41 29.54 68.60 2.03 42.43 16 19 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 20 H -0.29 -11.75 7.11 99.48 0.71 -11.04 16 21 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 22 C 0.41 21.33 2.81 71.98 0.20 21.53 16 23 F -0.20 -9.70 16.94 44.97 0.76 -8.94 16 24 F -0.15 -8.60 12.91 44.97 0.58 -8.02 16 25 F -0.22 -11.25 15.68 44.97 0.71 -10.54 16 26 C -0.15 -2.11 6.36 30.59 0.19 -1.91 16 27 C 0.50 11.34 8.03 87.87 0.71 12.05 16 28 O -0.59 -19.54 17.60 -3.05 -0.05 -19.60 16 29 H 0.08 1.03 8.14 -2.39 -0.02 1.02 16 30 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.07 1.14 7.93 -2.39 -0.02 1.12 16 33 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 35 H 0.09 0.71 7.88 -2.39 -0.02 0.69 16 36 H 0.04 0.98 8.12 -2.39 -0.02 0.96 16 37 H 0.07 1.51 8.10 -2.39 -0.02 1.49 16 38 H 0.41 6.86 8.49 -92.71 -0.79 6.08 16 39 H 0.41 13.10 8.55 -92.71 -0.79 12.31 16 40 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16 41 H 0.09 1.65 7.76 -2.39 -0.02 1.63 16 42 H 0.14 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -79.28 362.22 2.01 -77.27 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: -0.50 Total: 19.15 kcal Atomic # 6 Polarization: 45.22 SS G_CDS: 5.62 Total: 50.84 kcal Atomic # 7 Polarization: -104.78 SS G_CDS: -7.06 Total: -111.84 kcal Atomic # 8 Polarization: -50.23 SS G_CDS: -0.11 Total: -50.35 kcal Atomic # 9 Polarization: -29.55 SS G_CDS: 2.05 Total: -27.50 kcal Atomic # 14 Polarization: 40.41 SS G_CDS: 2.03 Total: 42.43 kcal Total: -79.28 2.01 -77.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932896968.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.778 kcal (2) G-P(sol) polarization free energy of solvation -79.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -227.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds