Wall clock time and date at job start Tue Mar 31 2020 21:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47601 * 2 1 4 4 C 1.46768 * 124.34879 * 89.99607 * 3 2 1 5 5 C 1.54480 * 105.55098 * 197.08340 * 4 3 2 6 6 H 1.09001 * 110.96924 * 216.42557 * 5 4 3 7 7 C 1.53001 * 110.96983 * 92.65987 * 5 4 3 8 8 N 1.46500 * 109.46956 * 175.00184 * 7 5 4 9 9 C 1.34776 * 120.00068 * 180.02562 * 8 7 5 10 10 O 1.21590 * 119.99684 * 359.97438 * 9 8 7 11 11 N 1.34771 * 120.00259 * 180.02562 * 9 8 7 12 12 C 1.46506 * 120.00023 * 180.02562 * 11 9 8 13 13 H 1.08993 * 109.47351 * 34.99070 * 12 11 9 14 14 C 1.50703 * 109.47034 * 154.99796 * 12 11 9 15 15 H 1.07996 * 119.99850 * 359.97438 * 14 12 11 16 16 C 1.37876 * 119.99846 * 179.97438 * 14 12 11 17 17 N 1.31520 * 119.99895 * 359.97438 * 16 14 12 18 18 Si 1.86793 * 119.99952 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47511 * 60.00078 * 18 16 14 20 20 H 1.48503 * 109.47084 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47030 * 299.99806 * 18 16 14 22 22 C 1.53007 * 109.46572 * 274.99395 * 12 11 9 23 23 F 1.39898 * 109.47006 * 60.00487 * 22 12 11 24 24 F 1.39898 * 109.46445 * 180.02562 * 22 12 11 25 25 F 1.39898 * 109.47065 * 300.00081 * 22 12 11 26 26 C 1.54631 * 101.76472 * 334.54015 * 5 4 3 27 27 C 1.34621 * 124.47196 * 270.02849 * 3 2 1 28 28 O 1.21286 * 124.90539 * 359.55259 * 27 3 2 29 29 H 1.08998 * 109.46730 * 59.99602 * 1 2 3 30 30 H 1.08999 * 109.46773 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46756 * 299.99998 * 1 2 3 32 32 H 1.09002 * 109.47341 * 240.00121 * 2 1 3 33 33 H 1.08998 * 109.47560 * 120.00001 * 2 1 3 34 34 H 1.09002 * 110.24468 * 78.03845 * 4 3 2 35 35 H 1.09002 * 110.24463 * 316.12602 * 4 3 2 36 36 H 1.09001 * 109.46982 * 295.00095 * 7 5 4 37 37 H 1.08998 * 109.47052 * 55.00265 * 7 5 4 38 38 H 0.96999 * 120.00025 * 359.97438 * 8 7 5 39 39 H 0.96999 * 119.99834 * 359.97438 * 11 9 8 40 40 H 0.97003 * 119.99691 * 179.97438 * 17 16 14 41 41 H 1.09000 * 110.48694 * 143.47575 * 26 5 4 42 42 H 1.08994 * 110.49106 * 266.12244 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2945 2.1619 1.2117 5 6 2.3518 3.6353 0.7510 6 1 3.1112 4.1878 1.3043 7 6 0.9829 4.3050 0.8864 8 7 1.1003 5.7273 0.5555 9 6 0.0136 6.5230 0.6066 10 8 -1.0642 6.0602 0.9269 11 7 0.1215 7.8314 0.3017 12 6 -1.0596 8.6964 0.3578 13 1 -1.7060 8.3762 1.1749 14 6 -0.6278 10.1218 0.5876 15 1 0.4213 10.3595 0.6828 16 6 -1.5723 11.1224 0.6764 17 7 -2.8499 10.8329 0.5599 18 14 -1.0372 12.8891 0.9619 19 1 -0.1558 13.3254 -0.1507 20 1 -2.2343 13.7661 1.0174 21 1 -0.2961 12.9805 2.2456 22 6 -1.8241 8.6019 -0.9642 23 9 -2.2249 7.2786 -1.1775 24 9 -2.9516 9.4283 -0.9108 25 9 -0.9944 9.0127 -2.0130 26 6 2.7499 3.4854 -0.7357 27 6 2.2720 2.0997 -1.1098 28 8 2.1363 1.6946 -2.2449 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.2503 1.8640 1.6428 35 1 1.4942 2.0251 1.9391 36 1 0.2772 3.8304 0.2047 37 1 0.6261 4.1986 1.9109 38 1 1.9602 6.0966 0.3004 39 1 0.9812 8.2004 0.0459 40 1 -3.5144 11.5368 0.6227 41 1 2.2481 4.2389 -1.3428 42 1 3.8312 3.5599 -0.8505 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932896969.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:17 Heat of formation + Delta-G solvation = -201.509201 kcal Electronic energy + Delta-G solvation = -30435.171943 eV Core-core repulsion = 25614.978801 eV Total energy + Delta-G solvation = -4820.193142 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -48.29856 -45.95073 -45.57076 -40.83473 -39.29461 -36.97560 -35.41973 -34.52788 -33.30318 -32.48896 -30.10783 -28.55316 -27.97601 -25.55801 -24.51494 -23.58275 -21.71541 -21.10425 -20.25778 -19.57794 -18.34029 -17.10734 -16.94843 -16.78121 -16.60272 -16.56439 -15.84353 -15.75425 -15.31590 -14.79907 -14.74296 -14.23458 -14.02857 -13.99923 -13.52462 -13.46117 -13.27564 -13.11793 -12.86419 -12.57668 -12.44865 -12.34930 -12.28049 -12.24630 -11.95335 -11.93212 -11.78031 -11.68791 -11.36421 -11.26251 -11.14559 -10.86592 -10.78006 -10.39815 -9.95596 -9.67311 -9.57944 -9.01751 -8.85115 -8.70653 -8.17158 -6.22845 -4.47096 2.38820 2.72830 3.09333 3.19731 3.25062 3.27142 3.76574 4.04250 4.09507 4.19858 4.33039 4.57431 4.61043 4.75417 4.84878 4.88736 4.94430 5.07466 5.10165 5.14947 5.22689 5.40292 5.42393 5.49574 5.62072 5.71719 5.86253 5.89513 5.91800 5.95565 6.25001 6.29018 6.70965 6.83895 6.85030 7.19962 7.35986 7.62248 7.67454 7.96712 8.49145 8.64245 9.14054 9.24627 10.68587 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.022038 B = 0.002733 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.246982 B =10242.406400 C =10582.796043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.123 3.877 3 N -0.622 5.622 4 C 0.111 3.889 5 C -0.113 4.113 6 H 0.107 0.893 7 C 0.150 3.850 8 N -0.754 5.754 9 C 0.699 3.301 10 O -0.583 6.583 11 N -0.726 5.726 12 C 0.263 3.737 13 H 0.085 0.915 14 C -0.553 4.553 15 H 0.076 0.924 16 C 0.065 3.935 17 N -0.839 5.839 18 Si 0.915 3.085 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.273 1.273 22 C 0.415 3.585 23 F -0.216 7.216 24 F -0.138 7.138 25 F -0.210 7.210 26 C -0.154 4.154 27 C 0.519 3.481 28 O -0.531 6.531 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.393 0.607 39 H 0.394 0.606 40 H 0.269 0.731 41 H 0.108 0.892 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.442 -15.081 3.269 19.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.002 3.998 3 N -0.358 5.358 4 C -0.012 4.012 5 C -0.132 4.132 6 H 0.125 0.875 7 C 0.025 3.975 8 N -0.411 5.411 9 C 0.398 3.602 10 O -0.460 6.460 11 N -0.378 5.378 12 C 0.157 3.843 13 H 0.103 0.897 14 C -0.590 4.590 15 H 0.095 0.905 16 C -0.144 4.144 17 N -0.472 5.472 18 Si 0.742 3.258 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.198 1.198 22 C 0.359 3.641 23 F -0.198 7.198 24 F -0.119 7.119 25 F -0.192 7.192 26 C -0.194 4.194 27 C 0.307 3.693 28 O -0.408 6.408 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.226 0.774 39 H 0.228 0.772 40 H 0.079 0.921 41 H 0.126 0.874 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 11.060 -15.725 2.949 19.450 hybrid contribution 0.819 1.221 -0.371 1.516 sum 11.879 -14.503 2.579 18.924 Atomic orbital electron populations 1.22177 0.95537 1.02371 1.02963 1.21329 0.94580 0.80980 1.02946 1.48398 1.66180 1.13952 1.07251 1.22058 1.02098 0.89474 0.87618 1.22443 0.98857 0.95762 0.96146 0.87456 1.21057 0.94856 0.80102 1.01498 1.45028 1.10754 1.08951 1.76399 1.16049 0.83950 0.81565 0.78602 1.90927 1.26203 1.74365 1.54533 1.45258 1.13190 1.06836 1.72548 1.19591 0.83673 0.91080 0.89961 0.89749 1.20837 0.94534 0.89135 1.54488 0.90543 1.25080 0.94799 1.00352 0.94176 1.70403 1.00247 1.33694 1.42893 0.86270 0.78198 0.82381 0.78956 1.19850 1.20887 1.19813 1.23188 0.80061 0.72054 0.88838 1.93075 1.91810 1.38897 1.96060 1.93400 1.52452 1.70129 1.95899 1.92983 1.73137 1.90688 1.62412 1.22485 1.03713 0.96139 0.97094 1.20974 0.76301 0.87707 0.84333 1.90731 1.53264 1.75631 1.21139 0.92054 0.91439 0.92119 0.90133 0.90370 0.90424 0.89741 0.91688 0.91080 0.77352 0.77242 0.92060 0.87398 0.87474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.42 10.24 37.16 0.38 -1.04 16 2 C 0.12 0.95 6.66 -4.04 -0.03 0.93 16 3 N -0.62 -5.56 2.94 -172.35 -0.51 -6.06 16 4 C 0.11 0.68 6.89 -3.12 -0.02 0.65 16 5 C -0.11 -0.78 3.16 -88.99 -0.28 -1.06 16 6 H 0.11 0.50 8.14 -51.93 -0.42 0.07 16 7 C 0.15 1.66 4.96 -4.04 -0.02 1.64 16 8 N -0.75 -9.92 5.35 -65.23 -0.35 -10.27 16 9 C 0.70 13.47 8.10 -86.92 -0.70 12.77 16 10 O -0.58 -13.82 14.91 5.29 0.08 -13.74 16 11 N -0.73 -14.47 4.99 -59.81 -0.30 -14.77 16 12 C 0.26 6.51 2.21 -69.07 -0.15 6.36 16 13 H 0.08 2.35 7.58 -51.93 -0.39 1.95 16 14 C -0.55 -13.93 8.46 -34.44 -0.29 -14.22 16 15 H 0.08 1.80 7.74 -52.49 -0.41 1.39 16 16 C 0.06 1.67 5.20 -17.82 -0.09 1.58 16 17 N -0.84 -22.97 9.50 55.43 0.53 -22.44 16 18 Si 0.92 19.89 29.54 -169.99 -5.02 14.87 16 19 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 20 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 21 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 22 C 0.42 10.76 2.81 37.16 0.10 10.87 16 23 F -0.22 -5.65 15.67 2.25 0.04 -5.61 16 24 F -0.14 -3.85 12.91 2.25 0.03 -3.82 16 25 F -0.21 -5.24 16.94 2.25 0.04 -5.21 16 26 C -0.15 -1.31 6.36 -26.74 -0.17 -1.48 16 27 C 0.52 6.10 8.03 -10.77 -0.09 6.02 16 28 O -0.53 -8.60 17.60 5.55 0.10 -8.50 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.70 7.93 -51.93 -0.41 0.29 16 33 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.08 0.46 7.88 -51.93 -0.41 0.06 16 36 H 0.06 0.89 8.12 -51.93 -0.42 0.47 16 37 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 38 H 0.39 3.87 8.49 -40.82 -0.35 3.52 16 39 H 0.39 6.63 8.55 -40.82 -0.35 6.28 16 40 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 41 H 0.11 1.07 7.76 -51.93 -0.40 0.67 16 42 H 0.11 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 362.20 15.07 5.46 5.46 Total: -1.00 -34.58 362.20 -6.93 -41.51 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -5.66 Total: 5.57 kcal Atomic # 6 Polarization: 24.37 SS G_CDS: -1.36 Total: 23.01 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: -0.63 Total: -53.54 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: 0.18 Total: -22.24 kcal Atomic # 9 Polarization: -14.74 SS G_CDS: 0.10 Total: -14.64 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.58 -6.93 -41.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932896969.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.998 kcal (2) G-P(sol) polarization free energy of solvation -34.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds