Wall clock time and date at job start Tue Mar 31 2020 21:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47601 * 2 1 4 4 C 1.46768 * 124.34879 * 89.99607 * 3 2 1 5 5 C 1.54480 * 105.55098 * 197.08340 * 4 3 2 6 6 H 1.09001 * 110.96924 * 216.42557 * 5 4 3 7 7 C 1.53001 * 110.96983 * 92.65987 * 5 4 3 8 8 N 1.46500 * 109.46956 * 175.00184 * 7 5 4 9 9 C 1.34776 * 120.00068 * 180.02562 * 8 7 5 10 10 O 1.21590 * 119.99684 * 359.97438 * 9 8 7 11 11 N 1.34771 * 120.00259 * 180.02562 * 9 8 7 12 12 C 1.46506 * 120.00023 * 180.02562 * 11 9 8 13 13 H 1.08993 * 109.47351 * 34.99070 * 12 11 9 14 14 C 1.50703 * 109.47034 * 154.99796 * 12 11 9 15 15 H 1.07996 * 119.99850 * 359.97438 * 14 12 11 16 16 C 1.37876 * 119.99846 * 179.97438 * 14 12 11 17 17 N 1.31520 * 119.99895 * 359.97438 * 16 14 12 18 18 Si 1.86793 * 119.99952 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47511 * 60.00078 * 18 16 14 20 20 H 1.48503 * 109.47084 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47030 * 299.99806 * 18 16 14 22 22 C 1.53007 * 109.46572 * 274.99395 * 12 11 9 23 23 F 1.39898 * 109.47006 * 60.00487 * 22 12 11 24 24 F 1.39898 * 109.46445 * 180.02562 * 22 12 11 25 25 F 1.39898 * 109.47065 * 300.00081 * 22 12 11 26 26 C 1.54631 * 101.76472 * 334.54015 * 5 4 3 27 27 C 1.34621 * 124.47196 * 270.02849 * 3 2 1 28 28 O 1.21286 * 124.90539 * 359.55259 * 27 3 2 29 29 H 1.08998 * 109.46730 * 59.99602 * 1 2 3 30 30 H 1.08999 * 109.46773 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46756 * 299.99998 * 1 2 3 32 32 H 1.09002 * 109.47341 * 240.00121 * 2 1 3 33 33 H 1.08998 * 109.47560 * 120.00001 * 2 1 3 34 34 H 1.09002 * 110.24468 * 78.03845 * 4 3 2 35 35 H 1.09002 * 110.24463 * 316.12602 * 4 3 2 36 36 H 1.09001 * 109.46982 * 295.00095 * 7 5 4 37 37 H 1.08998 * 109.47052 * 55.00265 * 7 5 4 38 38 H 0.96999 * 120.00025 * 359.97438 * 8 7 5 39 39 H 0.96999 * 119.99834 * 359.97438 * 11 9 8 40 40 H 0.97003 * 119.99691 * 179.97438 * 17 16 14 41 41 H 1.09000 * 110.48694 * 143.47575 * 26 5 4 42 42 H 1.08994 * 110.49106 * 266.12244 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2945 2.1619 1.2117 5 6 2.3518 3.6353 0.7510 6 1 3.1112 4.1878 1.3043 7 6 0.9829 4.3050 0.8864 8 7 1.1003 5.7273 0.5555 9 6 0.0136 6.5230 0.6066 10 8 -1.0642 6.0602 0.9269 11 7 0.1215 7.8314 0.3017 12 6 -1.0596 8.6964 0.3578 13 1 -1.7060 8.3762 1.1749 14 6 -0.6278 10.1218 0.5876 15 1 0.4213 10.3595 0.6828 16 6 -1.5723 11.1224 0.6764 17 7 -2.8499 10.8329 0.5599 18 14 -1.0372 12.8891 0.9619 19 1 -0.1558 13.3254 -0.1507 20 1 -2.2343 13.7661 1.0174 21 1 -0.2961 12.9805 2.2456 22 6 -1.8241 8.6019 -0.9642 23 9 -2.2249 7.2786 -1.1775 24 9 -2.9516 9.4283 -0.9108 25 9 -0.9944 9.0127 -2.0130 26 6 2.7499 3.4854 -0.7357 27 6 2.2720 2.0997 -1.1098 28 8 2.1363 1.6946 -2.2449 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.2503 1.8640 1.6428 35 1 1.4942 2.0251 1.9391 36 1 0.2772 3.8304 0.2047 37 1 0.6261 4.1986 1.9109 38 1 1.9602 6.0966 0.3004 39 1 0.9812 8.2004 0.0459 40 1 -3.5144 11.5368 0.6227 41 1 2.2481 4.2389 -1.3428 42 1 3.8312 3.5599 -0.8505 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932896969.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:15 Heat of formation + Delta-G solvation = -227.184562 kcal Electronic energy + Delta-G solvation = -30436.285310 eV Core-core repulsion = 25614.978801 eV Total energy + Delta-G solvation = -4821.306509 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.39446 -48.03231 -47.70775 -41.64571 -40.76937 -37.94664 -36.67530 -36.02543 -34.57169 -34.08945 -31.09097 -29.95942 -28.89762 -26.68214 -26.37270 -24.28784 -23.49608 -21.93342 -21.80558 -20.44306 -19.88424 -18.86993 -18.76754 -18.53884 -18.03458 -17.66139 -17.24186 -16.89325 -16.55548 -16.44455 -16.02998 -15.36870 -15.21156 -14.99955 -14.93359 -14.80123 -14.50229 -14.44798 -14.42722 -14.27285 -14.18868 -14.03310 -13.97771 -13.83583 -13.20456 -13.11792 -12.98282 -12.76331 -12.63472 -12.58907 -12.35598 -12.19956 -12.03221 -11.95852 -11.57212 -11.26310 -10.84626 -10.65421 -10.29903 -9.77500 -9.69291 -8.18563 -6.49663 1.48419 1.51588 1.52304 1.59495 1.75481 2.09680 2.17629 2.39445 2.58910 2.97072 3.27024 3.38241 3.53572 3.67780 3.81335 3.90439 3.97219 4.13209 4.22139 4.24639 4.42605 4.47628 4.61957 4.66689 4.71839 4.75067 4.84100 4.87867 4.93105 4.97370 5.15552 5.24792 5.46325 5.53453 5.56494 5.63306 5.67942 6.12341 6.17290 6.55792 7.13880 7.19235 7.24958 7.69312 8.73970 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.022038 B = 0.002733 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.246982 B =10242.406400 C =10582.796043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.119 3.881 3 N -0.620 5.620 4 C 0.109 3.891 5 C -0.094 4.094 6 H 0.149 0.851 7 C 0.147 3.853 8 N -0.728 5.728 9 C 0.693 3.307 10 O -0.632 6.632 11 N -0.719 5.719 12 C 0.272 3.728 13 H 0.046 0.954 14 C -0.561 4.561 15 H 0.095 0.905 16 C 0.014 3.986 17 N -0.876 5.876 18 Si 0.984 3.016 19 H -0.266 1.266 20 H -0.287 1.287 21 H -0.260 1.260 22 C 0.410 3.590 23 F -0.221 7.221 24 F -0.152 7.152 25 F -0.204 7.204 26 C -0.149 4.149 27 C 0.501 3.499 28 O -0.591 6.591 29 H 0.025 0.975 30 H 0.085 0.915 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.094 0.906 36 H 0.032 0.968 37 H 0.073 0.927 38 H 0.414 0.586 39 H 0.411 0.589 40 H 0.268 0.732 41 H 0.090 0.910 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.561 -14.846 4.986 22.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.003 4.003 3 N -0.354 5.354 4 C -0.013 4.013 5 C -0.113 4.113 6 H 0.167 0.833 7 C 0.023 3.977 8 N -0.385 5.385 9 C 0.393 3.607 10 O -0.513 6.513 11 N -0.374 5.374 12 C 0.164 3.836 13 H 0.064 0.936 14 C -0.597 4.597 15 H 0.113 0.887 16 C -0.192 4.192 17 N -0.510 5.510 18 Si 0.808 3.192 19 H -0.191 1.191 20 H -0.213 1.213 21 H -0.185 1.185 22 C 0.353 3.647 23 F -0.203 7.203 24 F -0.133 7.133 25 F -0.186 7.186 26 C -0.189 4.189 27 C 0.291 3.709 28 O -0.473 6.473 29 H 0.044 0.956 30 H 0.104 0.896 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.113 0.887 36 H 0.051 0.949 37 H 0.092 0.908 38 H 0.251 0.749 39 H 0.248 0.752 40 H 0.078 0.922 41 H 0.109 0.891 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 14.270 -15.518 4.702 21.600 hybrid contribution -0.182 1.038 -0.898 1.385 sum 14.088 -14.480 3.804 20.557 Atomic orbital electron populations 1.22146 0.96216 1.03063 1.01238 1.21471 0.93979 0.80800 1.04020 1.48606 1.64702 1.14389 1.07663 1.22358 1.04456 0.88122 0.86405 1.22425 0.96842 0.96521 0.95536 0.83317 1.21221 0.97242 0.78606 1.00636 1.44813 1.09952 1.09185 1.74595 1.16289 0.84633 0.81552 0.78233 1.90896 1.28630 1.75146 1.56592 1.44966 1.12596 1.06932 1.72864 1.19152 0.84524 0.91971 0.87955 0.93598 1.21213 0.95442 0.89168 1.53901 0.88702 1.26022 0.94709 1.04720 0.93706 1.70544 1.01471 1.34878 1.44112 0.85199 0.77690 0.76956 0.79398 1.19083 1.21250 1.18457 1.23478 0.79911 0.71640 0.89641 1.93063 1.91908 1.39198 1.96134 1.93372 1.53331 1.70561 1.96022 1.92979 1.72807 1.90612 1.62196 1.22506 1.05271 0.93441 0.97668 1.21651 0.75942 0.89216 0.84106 1.90689 1.56050 1.77011 1.23500 0.95618 0.89647 0.91825 0.91584 0.86689 0.86626 0.88742 0.94934 0.90835 0.74906 0.75238 0.92225 0.89134 0.84419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.76 10.24 71.98 0.74 -2.03 16 2 C 0.12 1.69 6.66 86.38 0.58 2.27 16 3 N -0.62 -10.07 2.94 -817.66 -2.40 -12.47 16 4 C 0.11 0.90 6.89 86.83 0.60 1.50 16 5 C -0.09 -0.96 3.16 -9.73 -0.03 -0.99 16 6 H 0.15 0.45 8.14 -2.39 -0.02 0.43 16 7 C 0.15 3.04 4.96 86.38 0.43 3.47 16 8 N -0.73 -17.90 5.35 -478.54 -2.56 -20.46 16 9 C 0.69 26.55 8.10 179.06 1.45 28.00 16 10 O -0.63 -30.68 14.91 -4.00 -0.06 -30.74 16 11 N -0.72 -28.29 4.99 -461.40 -2.30 -30.59 16 12 C 0.27 13.62 2.21 44.25 0.10 13.71 16 13 H 0.05 2.67 7.58 -2.39 -0.02 2.65 16 14 C -0.56 -27.86 8.46 25.60 0.22 -27.64 16 15 H 0.10 4.26 7.74 -2.91 -0.02 4.23 16 16 C 0.01 0.70 5.20 84.65 0.44 1.14 16 17 N -0.88 -48.65 9.50 21.45 0.20 -48.45 16 18 Si 0.98 39.95 29.54 68.60 2.03 41.97 16 19 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 20 H -0.29 -11.71 7.11 99.48 0.71 -11.00 16 21 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 22 C 0.41 21.62 2.81 71.98 0.20 21.83 16 23 F -0.22 -11.85 15.67 44.97 0.70 -11.15 16 24 F -0.15 -8.70 12.91 44.97 0.58 -8.12 16 25 F -0.20 -10.15 16.94 44.97 0.76 -9.39 16 26 C -0.15 -2.20 6.36 30.59 0.19 -2.01 16 27 C 0.50 11.63 8.03 87.87 0.71 12.33 16 28 O -0.59 -20.05 17.60 -3.05 -0.05 -20.10 16 29 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.07 1.15 7.93 -2.39 -0.02 1.13 16 33 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16 35 H 0.09 0.68 7.88 -2.39 -0.02 0.66 16 36 H 0.03 0.90 8.12 -2.39 -0.02 0.88 16 37 H 0.07 1.54 8.10 -2.39 -0.02 1.52 16 38 H 0.41 6.86 8.49 -92.71 -0.79 6.08 16 39 H 0.41 13.08 8.55 -92.71 -0.79 12.29 16 40 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 41 H 0.09 1.70 7.76 -2.39 -0.02 1.68 16 42 H 0.14 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -80.13 362.20 2.01 -78.12 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: -0.50 Total: 19.79 kcal Atomic # 6 Polarization: 45.97 SS G_CDS: 5.62 Total: 51.59 kcal Atomic # 7 Polarization: -104.91 SS G_CDS: -7.06 Total: -111.97 kcal Atomic # 8 Polarization: -50.73 SS G_CDS: -0.11 Total: -50.84 kcal Atomic # 9 Polarization: -30.70 SS G_CDS: 2.05 Total: -28.65 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 2.03 Total: 41.97 kcal Total: -80.13 2.01 -78.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932896969.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.064 kcal (2) G-P(sol) polarization free energy of solvation -80.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -227.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds