Wall clock time and date at job start Tue Mar 31 2020 21:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47812 * 2 1 4 4 C 1.46766 * 124.34506 * 89.99858 * 3 2 1 5 5 C 1.54478 * 105.46805 * 163.01089 * 4 3 2 6 6 H 1.09003 * 110.96997 * 143.57098 * 5 4 3 7 7 C 1.52997 * 110.96883 * 267.29483 * 5 4 3 8 8 N 1.46502 * 109.47565 * 185.00445 * 7 5 4 9 9 C 1.34767 * 120.00497 * 179.97438 * 8 7 5 10 10 O 1.21588 * 120.00075 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00297 * 179.97438 * 9 8 7 12 12 C 1.46507 * 120.00337 * 180.02562 * 11 9 8 13 13 H 1.09001 * 109.46896 * 325.00217 * 12 11 9 14 14 C 1.50697 * 109.47006 * 205.00517 * 12 11 9 15 15 H 1.07991 * 120.00449 * 359.72165 * 14 12 11 16 16 C 1.37885 * 119.99686 * 179.97438 * 14 12 11 17 17 N 1.31516 * 119.99913 * 359.72095 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 179.72528 * 16 14 12 19 19 H 1.48490 * 109.47339 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47239 * 120.00108 * 18 16 14 21 21 H 1.48504 * 109.46636 * 239.99667 * 18 16 14 22 22 C 1.52999 * 109.47144 * 85.00358 * 12 11 9 23 23 F 1.39894 * 109.47009 * 180.02562 * 22 12 11 24 24 F 1.39908 * 109.47037 * 300.00199 * 22 12 11 25 25 F 1.39899 * 109.47119 * 59.99789 * 22 12 11 26 26 C 1.54624 * 101.77048 * 25.41557 * 5 4 3 27 27 C 1.34413 * 124.35112 * 270.02911 * 3 2 1 28 28 O 1.21287 * 124.94326 * 0.37811 * 27 3 2 29 29 H 1.09001 * 109.47002 * 300.00183 * 1 2 3 30 30 H 1.09005 * 109.46560 * 59.99213 * 1 2 3 31 31 H 1.08994 * 109.47413 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47002 * 239.99817 * 2 1 3 33 33 H 1.08999 * 109.47238 * 120.00912 * 2 1 3 34 34 H 1.08998 * 110.24753 * 44.00665 * 4 3 2 35 35 H 1.09002 * 110.24510 * 282.00333 * 4 3 2 36 36 H 1.09000 * 109.47489 * 65.00239 * 7 5 4 37 37 H 1.09008 * 109.47062 * 305.00395 * 7 5 4 38 38 H 0.97003 * 119.99661 * 359.97438 * 8 7 5 39 39 H 0.96999 * 120.00410 * 0.02562 * 11 9 8 40 40 H 0.97000 * 119.99651 * 180.02562 * 17 16 14 41 41 H 1.09000 * 110.48884 * 93.87699 * 26 5 4 42 42 H 1.09004 * 110.48806 * 216.52626 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.2946 2.1618 1.2118 5 6 3.1742 3.3442 0.7487 6 1 2.9308 4.2515 1.3016 7 6 4.6604 3.0066 0.8831 8 7 5.4615 4.1870 0.5501 9 6 6.8068 4.1245 0.6001 10 8 7.3558 3.0881 0.9211 11 7 7.5438 5.2103 0.2932 12 6 9.0063 5.1422 0.3469 13 1 9.3098 4.4878 1.1641 14 6 9.5655 6.5229 0.5749 15 1 8.8986 7.3674 0.6658 16 6 10.9290 6.7087 0.6623 17 7 11.7412 5.6801 0.5522 18 14 11.6224 8.4212 0.9373 19 1 10.5078 9.3983 1.0260 20 1 12.4018 8.4427 2.2010 21 1 12.5091 8.7841 -0.1974 22 6 9.5400 4.5877 -0.9755 23 9 10.9364 4.5221 -0.9239 24 9 9.0208 3.3059 -1.1871 25 9 9.1505 5.4276 -2.0243 26 6 2.7689 3.4756 -0.7377 27 6 2.2709 2.0964 -1.1097 28 8 2.1212 1.6945 -2.2442 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5140 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5140 0.8899 34 1 2.8328 1.5530 1.9382 35 1 1.3639 2.5304 1.6432 36 1 4.9113 2.1933 0.2022 37 1 4.8723 2.7009 1.9078 38 1 5.0237 5.0137 0.2937 39 1 7.1061 6.0370 0.0367 40 1 12.7003 5.8108 0.6141 41 1 1.9737 4.2122 -0.8527 42 1 3.6320 3.7464 -1.3460 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932896970.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:21 Heat of formation + Delta-G solvation = -201.689777 kcal Electronic energy + Delta-G solvation = -30273.103690 eV Core-core repulsion = 25452.902718 eV Total energy + Delta-G solvation = -4820.200972 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -48.30265 -45.95401 -45.57649 -40.85250 -39.29796 -36.97513 -35.44677 -34.53636 -33.31846 -32.49046 -30.10900 -28.57785 -27.98086 -25.61903 -24.52201 -23.57923 -21.71837 -21.11558 -20.26765 -19.57292 -18.34244 -17.24286 -16.95052 -16.79657 -16.57419 -16.44123 -15.81276 -15.75525 -15.31422 -14.89334 -14.78324 -14.29764 -14.02695 -13.86304 -13.79173 -13.33863 -13.26428 -13.05144 -12.87204 -12.73452 -12.48204 -12.35362 -12.27264 -12.25391 -11.96158 -11.93830 -11.78898 -11.70366 -11.44904 -11.22845 -11.15388 -10.86569 -10.77823 -10.39971 -9.95997 -9.64842 -9.57827 -9.03423 -8.85272 -8.71798 -8.17315 -6.23932 -4.47231 2.39874 2.71243 3.09344 3.17608 3.25445 3.28925 3.76561 4.04075 4.09342 4.19590 4.32926 4.56827 4.60469 4.72609 4.82778 4.86232 4.94196 5.02322 5.09124 5.15276 5.20802 5.35713 5.39976 5.47183 5.56981 5.71633 5.80451 5.86228 5.89831 5.91504 6.24493 6.27107 6.70953 6.83802 6.84952 7.19954 7.36168 7.62176 7.67304 7.96705 8.49658 8.64228 9.13998 9.24560 10.68215 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.024621 B = 0.002587 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.988885 B =10820.884558 C =11170.087923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.121 3.879 3 N -0.621 5.621 4 C 0.112 3.888 5 C -0.113 4.113 6 H 0.107 0.893 7 C 0.150 3.850 8 N -0.754 5.754 9 C 0.699 3.301 10 O -0.583 6.583 11 N -0.726 5.726 12 C 0.262 3.738 13 H 0.085 0.915 14 C -0.551 4.551 15 H 0.077 0.923 16 C 0.064 3.936 17 N -0.839 5.839 18 Si 0.915 3.085 19 H -0.270 1.270 20 H -0.280 1.280 21 H -0.280 1.280 22 C 0.415 3.585 23 F -0.138 7.138 24 F -0.217 7.217 25 F -0.210 7.210 26 C -0.154 4.154 27 C 0.519 3.481 28 O -0.532 6.532 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.393 0.607 39 H 0.394 0.606 40 H 0.268 0.732 41 H 0.107 0.893 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.735 -3.737 3.279 20.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.001 4.001 3 N -0.356 5.356 4 C -0.012 4.012 5 C -0.132 4.132 6 H 0.125 0.875 7 C 0.025 3.975 8 N -0.411 5.411 9 C 0.398 3.602 10 O -0.460 6.460 11 N -0.378 5.378 12 C 0.156 3.844 13 H 0.103 0.897 14 C -0.588 4.588 15 H 0.096 0.904 16 C -0.145 4.145 17 N -0.472 5.472 18 Si 0.742 3.258 19 H -0.194 1.194 20 H -0.206 1.206 21 H -0.206 1.206 22 C 0.359 3.641 23 F -0.119 7.119 24 F -0.198 7.198 25 F -0.192 7.192 26 C -0.195 4.195 27 C 0.307 3.693 28 O -0.408 6.408 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.226 0.774 39 H 0.228 0.772 40 H 0.078 0.922 41 H 0.125 0.875 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -19.062 -5.102 2.962 19.954 hybrid contribution 0.077 1.478 -0.383 1.528 sum -18.985 -3.625 2.579 19.499 Atomic orbital electron populations 1.22156 0.95824 1.02356 1.02355 1.21354 0.94258 0.81114 1.03390 1.48334 1.66170 1.13850 1.07278 1.22069 0.99129 0.92472 0.87534 1.22444 0.95081 0.99549 0.96141 0.87468 1.21062 0.86884 0.88080 1.01509 1.45026 1.04988 1.14781 1.76332 1.16048 0.80968 0.84542 0.78611 1.90927 1.70905 1.29662 1.54523 1.45260 1.07627 1.12446 1.72512 1.19602 0.74742 1.00075 0.89959 0.89725 1.20910 0.92369 0.91242 1.54298 0.90449 1.25089 0.96761 0.98425 0.94187 1.70410 1.04189 1.29528 1.43120 0.86156 0.79059 0.82595 0.77982 1.19435 1.20584 1.20591 1.23182 0.78155 0.73920 0.88850 1.93394 1.26966 1.95642 1.95924 1.93077 1.87450 1.43236 1.96081 1.92983 1.91380 1.72436 1.62416 1.22490 1.03901 0.95964 0.97100 1.20909 0.76413 0.87655 0.84330 1.90733 1.53512 1.75362 1.21195 0.92445 0.92301 0.91419 0.89974 0.90183 0.89654 0.90500 0.91672 0.91049 0.77350 0.77238 0.92163 0.87501 0.87393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.10 10.24 37.16 0.38 -0.72 16 2 C 0.12 0.93 6.65 -4.04 -0.03 0.91 16 3 N -0.62 -5.54 2.93 -172.41 -0.51 -6.05 16 4 C 0.11 0.68 6.90 -3.12 -0.02 0.65 16 5 C -0.11 -0.77 3.16 -88.99 -0.28 -1.06 16 6 H 0.11 0.50 8.14 -51.93 -0.42 0.07 16 7 C 0.15 1.65 4.96 -4.04 -0.02 1.63 16 8 N -0.75 -9.89 5.35 -65.23 -0.35 -10.24 16 9 C 0.70 13.46 8.10 -86.93 -0.70 12.75 16 10 O -0.58 -13.80 14.91 5.29 0.08 -13.72 16 11 N -0.73 -14.47 4.99 -59.81 -0.30 -14.77 16 12 C 0.26 6.48 2.21 -69.08 -0.15 6.33 16 13 H 0.09 2.35 7.58 -51.93 -0.39 1.96 16 14 C -0.55 -13.87 8.47 -34.44 -0.29 -14.16 16 15 H 0.08 1.83 7.74 -52.49 -0.41 1.42 16 16 C 0.06 1.66 5.20 -17.82 -0.09 1.56 16 17 N -0.84 -22.96 9.52 55.43 0.53 -22.43 16 18 Si 0.92 19.90 29.54 -169.99 -5.02 14.88 16 19 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 20 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 21 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 22 C 0.42 10.76 2.81 37.16 0.10 10.86 16 23 F -0.14 -3.86 12.93 2.25 0.03 -3.83 16 24 F -0.22 -5.65 15.67 2.25 0.04 -5.61 16 25 F -0.21 -5.23 16.94 2.25 0.04 -5.19 16 26 C -0.15 -1.31 6.36 -26.74 -0.17 -1.48 16 27 C 0.52 6.10 8.02 -10.86 -0.09 6.01 16 28 O -0.53 -8.60 17.60 5.55 0.10 -8.50 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.76 7.93 -51.93 -0.41 0.35 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.09 0.46 7.88 -51.93 -0.41 0.05 16 35 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.06 0.89 8.12 -51.93 -0.42 0.47 16 37 H 0.07 0.80 8.10 -51.92 -0.42 0.38 16 38 H 0.39 3.86 8.49 -40.82 -0.35 3.52 16 39 H 0.39 6.63 8.55 -40.82 -0.35 6.28 16 40 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 41 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.11 1.07 7.76 -51.93 -0.40 0.66 16 LS Contribution 362.21 15.07 5.46 5.46 Total: -1.00 -34.60 362.21 -6.93 -41.52 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -5.66 Total: 5.18 kcal Atomic # 6 Polarization: 24.66 SS G_CDS: -1.36 Total: 23.30 kcal Atomic # 7 Polarization: -52.86 SS G_CDS: -0.63 Total: -53.49 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: 0.18 Total: -22.22 kcal Atomic # 9 Polarization: -14.74 SS G_CDS: 0.10 Total: -14.63 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.60 -6.93 -41.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932896970.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.165 kcal (2) G-P(sol) polarization free energy of solvation -34.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds