Wall clock time and date at job start Tue Mar 31 2020 21:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47812 * 2 1 4 4 C 1.46766 * 124.34506 * 89.99858 * 3 2 1 5 5 C 1.54478 * 105.46805 * 163.01089 * 4 3 2 6 6 H 1.09003 * 110.96997 * 143.57098 * 5 4 3 7 7 C 1.52997 * 110.96883 * 267.29483 * 5 4 3 8 8 N 1.46502 * 109.47565 * 185.00445 * 7 5 4 9 9 C 1.34767 * 120.00497 * 179.97438 * 8 7 5 10 10 O 1.21588 * 120.00075 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00297 * 179.97438 * 9 8 7 12 12 C 1.46507 * 120.00337 * 180.02562 * 11 9 8 13 13 H 1.09001 * 109.46896 * 325.00217 * 12 11 9 14 14 C 1.50697 * 109.47006 * 205.00517 * 12 11 9 15 15 H 1.07991 * 120.00449 * 359.72165 * 14 12 11 16 16 C 1.37885 * 119.99686 * 179.97438 * 14 12 11 17 17 N 1.31516 * 119.99913 * 359.72095 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 179.72528 * 16 14 12 19 19 H 1.48490 * 109.47339 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47239 * 120.00108 * 18 16 14 21 21 H 1.48504 * 109.46636 * 239.99667 * 18 16 14 22 22 C 1.52999 * 109.47144 * 85.00358 * 12 11 9 23 23 F 1.39894 * 109.47009 * 180.02562 * 22 12 11 24 24 F 1.39908 * 109.47037 * 300.00199 * 22 12 11 25 25 F 1.39899 * 109.47119 * 59.99789 * 22 12 11 26 26 C 1.54624 * 101.77048 * 25.41557 * 5 4 3 27 27 C 1.34413 * 124.35112 * 270.02911 * 3 2 1 28 28 O 1.21287 * 124.94326 * 0.37811 * 27 3 2 29 29 H 1.09001 * 109.47002 * 300.00183 * 1 2 3 30 30 H 1.09005 * 109.46560 * 59.99213 * 1 2 3 31 31 H 1.08994 * 109.47413 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47002 * 239.99817 * 2 1 3 33 33 H 1.08999 * 109.47238 * 120.00912 * 2 1 3 34 34 H 1.08998 * 110.24753 * 44.00665 * 4 3 2 35 35 H 1.09002 * 110.24510 * 282.00333 * 4 3 2 36 36 H 1.09000 * 109.47489 * 65.00239 * 7 5 4 37 37 H 1.09008 * 109.47062 * 305.00395 * 7 5 4 38 38 H 0.97003 * 119.99661 * 359.97438 * 8 7 5 39 39 H 0.96999 * 120.00410 * 0.02562 * 11 9 8 40 40 H 0.97000 * 119.99651 * 180.02562 * 17 16 14 41 41 H 1.09000 * 110.48884 * 93.87699 * 26 5 4 42 42 H 1.09004 * 110.48806 * 216.52626 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.2946 2.1618 1.2118 5 6 3.1742 3.3442 0.7487 6 1 2.9308 4.2515 1.3016 7 6 4.6604 3.0066 0.8831 8 7 5.4615 4.1870 0.5501 9 6 6.8068 4.1245 0.6001 10 8 7.3558 3.0881 0.9211 11 7 7.5438 5.2103 0.2932 12 6 9.0063 5.1422 0.3469 13 1 9.3098 4.4878 1.1641 14 6 9.5655 6.5229 0.5749 15 1 8.8986 7.3674 0.6658 16 6 10.9290 6.7087 0.6623 17 7 11.7412 5.6801 0.5522 18 14 11.6224 8.4212 0.9373 19 1 10.5078 9.3983 1.0260 20 1 12.4018 8.4427 2.2010 21 1 12.5091 8.7841 -0.1974 22 6 9.5400 4.5877 -0.9755 23 9 10.9364 4.5221 -0.9239 24 9 9.0208 3.3059 -1.1871 25 9 9.1505 5.4276 -2.0243 26 6 2.7689 3.4756 -0.7377 27 6 2.2709 2.0964 -1.1097 28 8 2.1212 1.6945 -2.2442 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5140 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5140 0.8899 34 1 2.8328 1.5530 1.9382 35 1 1.3639 2.5304 1.6432 36 1 4.9113 2.1933 0.2022 37 1 4.8723 2.7009 1.9078 38 1 5.0237 5.0137 0.2937 39 1 7.1061 6.0370 0.0367 40 1 12.7003 5.8108 0.6141 41 1 1.9737 4.2122 -0.8527 42 1 3.6320 3.7464 -1.3460 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932896970.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:20 Heat of formation + Delta-G solvation = -227.300379 kcal Electronic energy + Delta-G solvation = -30274.214249 eV Core-core repulsion = 25452.902718 eV Total energy + Delta-G solvation = -4821.311532 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.39406 -48.03041 -47.70984 -41.65943 -40.76950 -37.94510 -36.67862 -36.03263 -34.57194 -34.08522 -31.04580 -29.95471 -28.91210 -26.70094 -26.39812 -24.24132 -23.49081 -21.94033 -21.80589 -20.44147 -19.88262 -18.86759 -18.76561 -18.54027 -18.05182 -17.78440 -17.06384 -16.87487 -16.55890 -16.43972 -16.10397 -15.39022 -15.12699 -14.97431 -14.95148 -14.84220 -14.51883 -14.49432 -14.43649 -14.27341 -14.09547 -14.01128 -13.92904 -13.83779 -13.41298 -13.05031 -12.89174 -12.74029 -12.63942 -12.61167 -12.36327 -12.18030 -12.08497 -11.88145 -11.52379 -11.25972 -10.84918 -10.67761 -10.29383 -9.77516 -9.69970 -8.19442 -6.49499 1.47794 1.49379 1.53304 1.61803 1.75870 2.08546 2.18073 2.39112 2.58961 2.97046 3.27141 3.37818 3.53759 3.67775 3.81441 3.90544 3.96947 4.13323 4.22061 4.27705 4.42968 4.48944 4.63643 4.66242 4.71859 4.76205 4.85197 4.88421 4.94925 4.99164 5.15979 5.26786 5.46818 5.53881 5.56849 5.62466 5.68304 6.12314 6.17644 6.56572 7.13822 7.19424 7.25215 7.69788 8.74113 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.024621 B = 0.002587 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.988885 B =10820.884558 C =11170.087923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.112 3.888 3 N -0.619 5.619 4 C 0.109 3.891 5 C -0.094 4.094 6 H 0.148 0.852 7 C 0.147 3.853 8 N -0.728 5.728 9 C 0.693 3.307 10 O -0.632 6.632 11 N -0.720 5.720 12 C 0.272 3.728 13 H 0.046 0.954 14 C -0.557 4.557 15 H 0.095 0.905 16 C 0.013 3.987 17 N -0.876 5.876 18 Si 0.984 3.016 19 H -0.253 1.253 20 H -0.278 1.278 21 H -0.284 1.284 22 C 0.410 3.590 23 F -0.152 7.152 24 F -0.221 7.221 25 F -0.204 7.204 26 C -0.149 4.149 27 C 0.501 3.499 28 O -0.592 6.592 29 H 0.074 0.926 30 H 0.035 0.965 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.112 0.888 36 H 0.034 0.966 37 H 0.074 0.926 38 H 0.414 0.586 39 H 0.411 0.589 40 H 0.268 0.732 41 H 0.136 0.864 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.881 -1.620 4.997 22.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.009 4.009 3 N -0.352 5.352 4 C -0.013 4.013 5 C -0.113 4.113 6 H 0.166 0.834 7 C 0.023 3.977 8 N -0.385 5.385 9 C 0.393 3.607 10 O -0.512 6.512 11 N -0.374 5.374 12 C 0.163 3.837 13 H 0.064 0.936 14 C -0.594 4.594 15 H 0.113 0.887 16 C -0.192 4.192 17 N -0.511 5.511 18 Si 0.808 3.192 19 H -0.176 1.176 20 H -0.204 1.204 21 H -0.210 1.210 22 C 0.354 3.646 23 F -0.133 7.133 24 F -0.203 7.203 25 F -0.186 7.186 26 C -0.189 4.189 27 C 0.291 3.709 28 O -0.473 6.473 29 H 0.093 0.907 30 H 0.054 0.946 31 H 0.099 0.901 32 H 0.074 0.926 33 H 0.123 0.877 34 H 0.116 0.884 35 H 0.130 0.870 36 H 0.052 0.948 37 H 0.093 0.907 38 H 0.251 0.749 39 H 0.248 0.752 40 H 0.078 0.922 41 H 0.154 0.846 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -21.299 -2.951 4.718 22.014 hybrid contribution 0.701 0.715 -0.909 1.352 sum -20.598 -2.236 3.809 21.067 Atomic orbital electron populations 1.22077 0.94589 1.03178 1.01938 1.21502 0.95284 0.80773 1.03351 1.48544 1.64762 1.14205 1.07702 1.22361 1.00651 0.91916 0.86357 1.22418 0.91717 1.01666 0.95476 0.83398 1.21230 0.89360 0.86426 1.00721 1.44813 1.02773 1.16431 1.74530 1.16285 0.82681 0.83499 0.78243 1.90896 1.72386 1.31372 1.56573 1.44971 1.05968 1.13619 1.72839 1.19161 0.77350 0.99198 0.87955 0.93583 1.21263 0.92826 0.91644 1.53679 0.88706 1.26028 0.97240 1.02226 0.93749 1.70543 1.04404 1.31799 1.44313 0.85096 0.78522 0.78091 0.77507 1.17599 1.20366 1.20985 1.23466 0.77614 0.73887 0.89651 1.93366 1.28220 1.95716 1.96048 1.93065 1.87415 1.43669 1.96154 1.92980 1.91241 1.72161 1.62192 1.22508 1.04067 0.94600 0.97728 1.21582 0.76076 0.89170 0.84096 1.90690 1.56289 1.76784 1.23558 0.90744 0.94625 0.90087 0.92564 0.87695 0.88447 0.86978 0.94797 0.90739 0.74922 0.75240 0.92234 0.84572 0.89051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 10.24 71.98 0.74 -1.13 16 2 C 0.11 1.65 6.65 86.38 0.57 2.22 16 3 N -0.62 -10.14 2.93 -817.98 -2.40 -12.54 16 4 C 0.11 0.91 6.90 86.83 0.60 1.51 16 5 C -0.09 -0.95 3.16 -9.74 -0.03 -0.98 16 6 H 0.15 0.46 8.14 -2.39 -0.02 0.44 16 7 C 0.15 2.99 4.96 86.38 0.43 3.42 16 8 N -0.73 -17.76 5.35 -478.54 -2.56 -20.32 16 9 C 0.69 26.43 8.10 179.06 1.45 27.88 16 10 O -0.63 -30.52 14.91 -3.99 -0.06 -30.58 16 11 N -0.72 -28.22 4.99 -461.41 -2.30 -30.52 16 12 C 0.27 13.55 2.21 44.24 0.10 13.65 16 13 H 0.05 2.67 7.58 -2.39 -0.02 2.65 16 14 C -0.56 -27.62 8.47 25.60 0.22 -27.40 16 15 H 0.09 4.27 7.74 -2.92 -0.02 4.24 16 16 C 0.01 0.65 5.20 84.66 0.44 1.09 16 17 N -0.88 -48.61 9.52 21.45 0.20 -48.41 16 18 Si 0.98 39.98 29.54 68.60 2.03 42.01 16 19 H -0.25 -9.47 7.11 99.48 0.71 -8.76 16 20 H -0.28 -11.13 7.11 99.48 0.71 -10.42 16 21 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 22 C 0.41 21.59 2.81 71.98 0.20 21.79 16 23 F -0.15 -8.72 12.93 44.97 0.58 -8.14 16 24 F -0.22 -11.82 15.67 44.97 0.70 -11.11 16 25 F -0.20 -10.10 16.94 44.97 0.76 -9.34 16 26 C -0.15 -2.21 6.36 30.59 0.19 -2.02 16 27 C 0.50 11.67 8.02 87.90 0.71 12.38 16 28 O -0.59 -20.13 17.60 -3.05 -0.05 -20.18 16 29 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.03 0.58 8.14 -2.38 -0.02 0.56 16 31 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.06 1.11 7.93 -2.39 -0.02 1.09 16 33 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.10 0.66 7.88 -2.39 -0.02 0.65 16 35 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 36 H 0.03 0.92 8.12 -2.39 -0.02 0.90 16 37 H 0.07 1.53 8.10 -2.38 -0.02 1.51 16 38 H 0.41 6.81 8.49 -92.71 -0.79 6.03 16 39 H 0.41 13.05 8.55 -92.71 -0.79 12.25 16 40 H 0.27 14.06 8.31 -92.71 -0.77 13.29 16 41 H 0.14 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.09 1.70 7.76 -2.39 -0.02 1.69 16 Total: -1.00 -79.75 362.21 2.02 -77.74 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: -0.50 Total: 19.00 kcal Atomic # 6 Polarization: 46.78 SS G_CDS: 5.61 Total: 52.39 kcal Atomic # 7 Polarization: -104.74 SS G_CDS: -7.06 Total: -111.79 kcal Atomic # 8 Polarization: -50.64 SS G_CDS: -0.11 Total: -50.76 kcal Atomic # 9 Polarization: -30.64 SS G_CDS: 2.05 Total: -28.59 kcal Atomic # 14 Polarization: 39.98 SS G_CDS: 2.03 Total: 42.01 kcal Total: -79.75 2.02 -77.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932896970.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.564 kcal (2) G-P(sol) polarization free energy of solvation -79.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -227.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds