Wall clock time and date at job start Tue Mar 31 2020 21:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.47674 * 2 1 4 4 N 1.46505 * 109.47090 * 239.99572 * 2 1 3 5 5 C 1.34779 * 119.99815 * 85.00298 * 4 2 1 6 6 O 1.21583 * 119.99669 * 359.97438 * 5 4 2 7 7 N 1.34769 * 120.00008 * 180.02562 * 5 4 2 8 8 C 1.46501 * 120.00071 * 179.97438 * 7 5 4 9 9 H 1.08996 * 109.46863 * 325.00204 * 8 7 5 10 10 C 1.50697 * 109.47214 * 204.99482 * 8 7 5 11 11 H 1.07997 * 120.00263 * 0.02562 * 10 8 7 12 12 C 1.37879 * 120.00195 * 179.97438 * 10 8 7 13 13 N 1.31521 * 119.99677 * 0.02562 * 12 10 8 14 14 Si 1.86792 * 120.00265 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47354 * 90.00561 * 14 12 10 16 16 H 1.48508 * 109.47350 * 210.00431 * 14 12 10 17 17 H 1.48506 * 109.47288 * 330.00422 * 14 12 10 18 18 C 1.53007 * 109.46844 * 84.99969 * 8 7 5 19 19 F 1.39899 * 109.47257 * 60.00080 * 18 8 7 20 20 F 1.39897 * 109.46876 * 180.02562 * 18 8 7 21 21 F 1.39898 * 109.47039 * 300.00045 * 18 8 7 22 22 C 1.50703 * 109.47092 * 119.99974 * 2 1 3 23 23 O 1.21283 * 119.99854 * 93.18816 * 22 2 1 24 24 N 1.34775 * 119.99806 * 272.91806 * 22 2 1 25 25 C 1.47018 * 125.64848 * 4.65461 * 24 22 2 26 26 C 1.54324 * 107.27401 * 180.96915 * 25 24 22 27 27 C 1.55159 * 102.86167 * 22.52791 * 26 25 24 28 28 C 1.47426 * 125.64773 * 184.96593 * 24 22 2 29 29 H 1.08997 * 109.47017 * 184.92010 * 1 2 3 30 30 H 1.08997 * 109.46828 * 304.91908 * 1 2 3 31 31 H 1.09000 * 109.46963 * 64.91743 * 1 2 3 32 32 H 0.96995 * 119.99790 * 265.00023 * 4 2 1 33 33 H 0.97002 * 119.99981 * 359.97438 * 7 5 4 34 34 H 0.96996 * 119.99931 * 179.97438 * 13 12 10 35 35 H 1.09002 * 109.88146 * 300.50892 * 25 24 22 36 36 H 1.08998 * 109.88495 * 61.68431 * 25 24 22 37 37 H 1.08990 * 110.92528 * 264.11064 * 26 25 24 38 38 H 1.09006 * 110.58532 * 140.78336 * 26 25 24 39 39 H 1.09000 * 111.00114 * 206.22488 * 27 26 25 40 40 H 1.08998 * 111.00426 * 82.37587 * 27 26 25 41 41 H 1.09002 * 110.36664 * 274.67038 * 28 24 22 42 42 H 1.09000 * 110.36985 * 36.88180 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1962 5 6 2.1471 -0.0184 -2.3572 6 8 1.8576 1.1612 -2.4118 7 7 2.5959 -0.6539 -3.4577 8 6 2.7353 0.0768 -4.7198 9 1 1.9388 0.8164 -4.8013 10 6 2.6435 -0.8896 -5.8725 11 1 2.4957 -1.9426 -5.6839 12 6 2.7473 -0.4293 -7.1680 13 7 2.9268 0.8532 -7.3977 14 14 2.6328 -1.6270 -8.5968 15 1 1.2156 -1.7582 -9.0205 16 1 3.4443 -1.1212 -9.7331 17 1 3.1476 -2.9539 -8.1729 18 6 4.0923 0.7828 -4.7531 19 9 5.1146 -0.1665 -4.6484 20 9 4.2252 1.4810 -5.9580 21 9 4.1776 1.6799 -3.6830 22 6 2.0324 -0.7104 1.2305 23 8 2.2896 -1.8948 1.1844 24 7 2.2010 -0.0284 2.3807 25 6 1.8445 1.3807 2.6014 26 6 2.2392 1.7315 4.0515 27 6 3.3193 0.6678 4.3824 28 6 2.7793 -0.5701 3.6239 29 1 -0.3633 -1.0239 0.0881 30 1 -0.3633 0.5882 0.8426 31 1 -0.3633 0.4357 -0.9308 32 1 2.2490 -1.6318 -1.1525 33 1 2.8265 -1.5951 -3.4141 34 1 3.0002 1.1770 -8.3091 35 1 2.3905 2.0149 1.9030 36 1 0.7713 1.5169 2.4682 37 1 1.3850 1.6351 4.7216 38 1 2.6591 2.7361 4.1021 39 1 3.3661 0.4792 5.4549 40 1 4.2938 0.9676 3.9971 41 1 2.0108 -1.0706 4.2131 42 1 3.5909 -1.2609 3.3953 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932902503.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:24 Heat of formation + Delta-G solvation = -198.161713 kcal Electronic energy + Delta-G solvation = -30703.577672 eV Core-core repulsion = 25883.529688 eV Total energy + Delta-G solvation = -4820.047984 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.29442 -45.94612 -45.56549 -40.55913 -39.22178 -37.64887 -35.19659 -34.23569 -32.65363 -32.08696 -30.43192 -29.26554 -27.88875 -25.19738 -24.52143 -23.10836 -21.72773 -21.32587 -20.15690 -19.52582 -18.62769 -17.25815 -16.93488 -16.77865 -16.64620 -16.50771 -16.26829 -15.31036 -15.08737 -14.84655 -14.70582 -14.39884 -13.94046 -13.70988 -13.63598 -13.25038 -12.99290 -12.94765 -12.85953 -12.48322 -12.38996 -12.34359 -12.25977 -12.23423 -11.93024 -11.77541 -11.72351 -11.65977 -11.59214 -11.15379 -11.13126 -10.82083 -10.77864 -10.37744 -9.97400 -9.64582 -9.57062 -8.96482 -8.86040 -8.68993 -8.16609 -6.21350 -4.44722 2.32930 2.58069 3.20363 3.24766 3.28107 3.33483 3.75319 4.04831 4.18057 4.21520 4.48372 4.53035 4.60880 4.82682 4.87899 4.96070 4.97315 5.09970 5.12712 5.26925 5.33694 5.44136 5.46634 5.53334 5.62171 5.72996 5.77678 5.88000 5.92667 5.99303 6.14612 6.25943 6.68131 6.86878 7.19176 7.22912 7.39672 7.65034 7.71187 7.88943 8.52193 8.66658 9.15045 9.26010 10.70370 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.022350 B = 0.002884 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.483383 B = 9705.372900 C =10104.953661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.153 3.847 3 H 0.108 0.892 4 N -0.740 5.740 5 C 0.703 3.297 6 O -0.585 6.585 7 N -0.724 5.724 8 C 0.263 3.737 9 H 0.086 0.914 10 C -0.552 4.552 11 H 0.077 0.923 12 C 0.065 3.935 13 N -0.840 5.840 14 Si 0.916 3.084 15 H -0.276 1.276 16 H -0.283 1.283 17 H -0.271 1.271 18 C 0.415 3.585 19 F -0.210 7.210 20 F -0.137 7.137 21 F -0.217 7.217 22 C 0.531 3.469 23 O -0.535 6.535 24 N -0.618 5.618 25 C 0.093 3.907 26 C -0.131 4.131 27 C -0.135 4.135 28 C 0.105 3.895 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.402 0.598 33 H 0.396 0.604 34 H 0.268 0.732 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.392 0.232 20.350 20.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.043 3.957 3 H 0.125 0.875 4 N -0.398 5.398 5 C 0.403 3.597 6 O -0.462 6.462 7 N -0.376 5.376 8 C 0.157 3.843 9 H 0.104 0.896 10 C -0.589 4.589 11 H 0.096 0.904 12 C -0.144 4.144 13 N -0.473 5.473 14 Si 0.742 3.258 15 H -0.202 1.202 16 H -0.208 1.208 17 H -0.195 1.195 18 C 0.359 3.641 19 F -0.192 7.192 20 F -0.119 7.119 21 F -0.199 7.199 22 C 0.319 3.681 23 O -0.411 6.411 24 N -0.354 5.354 25 C -0.030 4.030 26 C -0.169 4.169 27 C -0.173 4.173 28 C -0.017 4.017 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.238 0.762 33 H 0.229 0.771 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.477 0.831 19.992 20.162 hybrid contribution 0.527 -1.219 -0.654 1.480 sum -1.950 -0.388 19.338 19.440 Atomic orbital electron populations 1.22114 0.92970 1.02776 1.03654 1.20429 0.95485 0.97507 0.82279 0.87454 1.44875 1.72905 1.14159 1.07906 1.15960 0.78463 0.85092 0.80159 1.90903 1.56958 1.13997 1.84360 1.45251 1.69393 1.13842 1.09118 1.19612 0.89557 0.94195 0.80945 0.89637 1.20892 1.54839 0.94153 0.88980 0.90445 1.25076 0.93990 0.95913 0.99414 1.70406 1.42840 1.12778 1.21297 0.86207 0.78236 0.80586 0.80763 1.20212 1.20820 1.19524 1.23188 0.90111 0.77294 0.73516 1.92986 1.64270 1.65870 1.96054 1.93400 1.96094 1.79776 1.42584 1.93065 1.97077 1.70870 1.58888 1.20493 0.77193 0.86930 0.83495 1.90696 1.51029 1.15153 1.84195 1.48446 1.62686 1.12591 1.11644 1.22193 1.00993 0.82058 0.97787 1.22640 0.99276 0.99905 0.95086 1.22807 0.99071 0.94683 1.00726 1.22238 0.98166 0.96615 0.84702 0.91912 0.91636 0.90065 0.76193 0.77050 0.92146 0.90588 0.90779 0.90354 0.89685 0.89668 0.90371 0.91364 0.90322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 9.47 37.16 0.35 -1.53 16 2 C 0.15 2.13 2.47 -69.08 -0.17 1.96 16 3 H 0.11 1.55 6.62 -51.93 -0.34 1.21 16 4 N -0.74 -12.10 5.06 -59.81 -0.30 -12.41 16 5 C 0.70 14.37 8.06 -86.92 -0.70 13.67 16 6 O -0.58 -13.75 14.58 5.29 0.08 -13.67 16 7 N -0.72 -15.30 4.99 -59.81 -0.30 -15.60 16 8 C 0.26 6.63 2.21 -69.08 -0.15 6.48 16 9 H 0.09 2.39 7.58 -51.93 -0.39 2.00 16 10 C -0.55 -14.22 8.46 -34.44 -0.29 -14.51 16 11 H 0.08 1.89 7.74 -52.49 -0.41 1.49 16 12 C 0.06 1.70 5.20 -17.82 -0.09 1.60 16 13 N -0.84 -23.13 9.50 55.43 0.53 -22.60 16 14 Si 0.92 20.27 29.54 -169.99 -5.02 15.25 16 15 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 16 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 17 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 18 C 0.42 10.84 2.81 37.16 0.10 10.95 16 19 F -0.21 -5.31 16.94 2.25 0.04 -5.27 16 20 F -0.14 -3.84 12.91 2.25 0.03 -3.81 16 21 F -0.22 -5.62 15.67 2.25 0.04 -5.58 16 22 C 0.53 7.16 7.04 -10.99 -0.08 7.09 16 23 O -0.53 -8.71 16.33 5.56 0.09 -8.62 16 24 N -0.62 -6.44 3.33 -170.52 -0.57 -7.01 16 25 C 0.09 0.70 6.29 -3.07 -0.02 0.68 16 26 C -0.13 -0.68 6.95 -24.90 -0.17 -0.85 16 27 C -0.13 -0.77 7.08 -24.58 -0.17 -0.94 16 28 C 0.11 0.89 6.89 -2.53 -0.02 0.87 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.61 7.35 -51.93 -0.38 0.23 16 31 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.40 6.15 7.82 -40.82 -0.32 5.83 16 33 H 0.40 7.38 8.55 -40.82 -0.35 7.03 16 34 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 35 H 0.08 0.61 7.68 -51.93 -0.40 0.21 16 36 H 0.07 0.48 7.35 -51.93 -0.38 0.10 16 37 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.08 0.76 8.08 -51.93 -0.42 0.34 16 LS Contribution 357.18 15.07 5.38 5.38 Total: -1.00 -32.52 357.18 -6.91 -39.43 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -5.49 Total: 9.05 kcal Atomic # 6 Polarization: 26.87 SS G_CDS: -1.41 Total: 25.46 kcal Atomic # 7 Polarization: -56.98 SS G_CDS: -0.64 Total: -57.62 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: 0.17 Total: -22.29 kcal Atomic # 9 Polarization: -14.77 SS G_CDS: 0.10 Total: -14.66 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.52 -6.91 -39.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932902503.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.731 kcal (2) G-P(sol) polarization free energy of solvation -32.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds