Wall clock time and date at job start Tue Mar 31 2020 21:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.47674 * 2 1 4 4 N 1.46505 * 109.47090 * 239.99572 * 2 1 3 5 5 C 1.34779 * 119.99815 * 85.00298 * 4 2 1 6 6 O 1.21583 * 119.99669 * 359.97438 * 5 4 2 7 7 N 1.34769 * 120.00008 * 180.02562 * 5 4 2 8 8 C 1.46501 * 120.00071 * 179.97438 * 7 5 4 9 9 H 1.08996 * 109.46863 * 325.00204 * 8 7 5 10 10 C 1.50697 * 109.47214 * 204.99482 * 8 7 5 11 11 H 1.07997 * 120.00263 * 0.02562 * 10 8 7 12 12 C 1.37879 * 120.00195 * 179.97438 * 10 8 7 13 13 N 1.31521 * 119.99677 * 0.02562 * 12 10 8 14 14 Si 1.86792 * 120.00265 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47354 * 90.00561 * 14 12 10 16 16 H 1.48508 * 109.47350 * 210.00431 * 14 12 10 17 17 H 1.48506 * 109.47288 * 330.00422 * 14 12 10 18 18 C 1.53007 * 109.46844 * 84.99969 * 8 7 5 19 19 F 1.39899 * 109.47257 * 60.00080 * 18 8 7 20 20 F 1.39897 * 109.46876 * 180.02562 * 18 8 7 21 21 F 1.39898 * 109.47039 * 300.00045 * 18 8 7 22 22 C 1.50703 * 109.47092 * 119.99974 * 2 1 3 23 23 O 1.21283 * 119.99854 * 93.18816 * 22 2 1 24 24 N 1.34775 * 119.99806 * 272.91806 * 22 2 1 25 25 C 1.47018 * 125.64848 * 4.65461 * 24 22 2 26 26 C 1.54324 * 107.27401 * 180.96915 * 25 24 22 27 27 C 1.55159 * 102.86167 * 22.52791 * 26 25 24 28 28 C 1.47426 * 125.64773 * 184.96593 * 24 22 2 29 29 H 1.08997 * 109.47017 * 184.92010 * 1 2 3 30 30 H 1.08997 * 109.46828 * 304.91908 * 1 2 3 31 31 H 1.09000 * 109.46963 * 64.91743 * 1 2 3 32 32 H 0.96995 * 119.99790 * 265.00023 * 4 2 1 33 33 H 0.97002 * 119.99981 * 359.97438 * 7 5 4 34 34 H 0.96996 * 119.99931 * 179.97438 * 13 12 10 35 35 H 1.09002 * 109.88146 * 300.50892 * 25 24 22 36 36 H 1.08998 * 109.88495 * 61.68431 * 25 24 22 37 37 H 1.08990 * 110.92528 * 264.11064 * 26 25 24 38 38 H 1.09006 * 110.58532 * 140.78336 * 26 25 24 39 39 H 1.09000 * 111.00114 * 206.22488 * 27 26 25 40 40 H 1.08998 * 111.00426 * 82.37587 * 27 26 25 41 41 H 1.09002 * 110.36664 * 274.67038 * 28 24 22 42 42 H 1.09000 * 110.36985 * 36.88180 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1962 5 6 2.1471 -0.0184 -2.3572 6 8 1.8576 1.1612 -2.4118 7 7 2.5959 -0.6539 -3.4577 8 6 2.7353 0.0768 -4.7198 9 1 1.9388 0.8164 -4.8013 10 6 2.6435 -0.8896 -5.8725 11 1 2.4957 -1.9426 -5.6839 12 6 2.7473 -0.4293 -7.1680 13 7 2.9268 0.8532 -7.3977 14 14 2.6328 -1.6270 -8.5968 15 1 1.2156 -1.7582 -9.0205 16 1 3.4443 -1.1212 -9.7331 17 1 3.1476 -2.9539 -8.1729 18 6 4.0923 0.7828 -4.7531 19 9 5.1146 -0.1665 -4.6484 20 9 4.2252 1.4810 -5.9580 21 9 4.1776 1.6799 -3.6830 22 6 2.0324 -0.7104 1.2305 23 8 2.2896 -1.8948 1.1844 24 7 2.2010 -0.0284 2.3807 25 6 1.8445 1.3807 2.6014 26 6 2.2392 1.7315 4.0515 27 6 3.3193 0.6678 4.3824 28 6 2.7793 -0.5701 3.6239 29 1 -0.3633 -1.0239 0.0881 30 1 -0.3633 0.5882 0.8426 31 1 -0.3633 0.4357 -0.9308 32 1 2.2490 -1.6318 -1.1525 33 1 2.8265 -1.5951 -3.4141 34 1 3.0002 1.1770 -8.3091 35 1 2.3905 2.0149 1.9030 36 1 0.7713 1.5169 2.4682 37 1 1.3850 1.6351 4.7216 38 1 2.6591 2.7361 4.1021 39 1 3.3661 0.4792 5.4549 40 1 4.2938 0.9676 3.9971 41 1 2.0108 -1.0706 4.2131 42 1 3.5909 -1.2609 3.3953 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932902503.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:23 Heat of formation + Delta-G solvation = -221.077950 kcal Electronic energy + Delta-G solvation = -30704.571395 eV Core-core repulsion = 25883.529688 eV Total energy + Delta-G solvation = -4821.041707 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.40109 -48.03557 -47.71197 -41.67046 -40.64032 -38.53211 -36.80186 -35.84630 -34.51256 -33.03256 -31.63296 -29.99856 -29.57845 -26.59395 -26.13410 -24.24293 -23.20727 -22.12513 -21.74982 -20.61634 -20.09468 -18.92139 -18.84789 -18.61162 -18.16785 -17.80539 -17.51449 -16.94029 -16.70679 -16.28417 -16.02313 -15.65586 -15.15522 -15.02012 -14.92261 -14.57127 -14.48774 -14.44167 -14.31068 -14.27836 -14.02103 -13.95090 -13.84787 -13.82071 -13.35838 -13.20266 -13.01328 -12.80511 -12.67650 -12.60142 -12.21282 -12.18066 -12.13950 -11.58918 -11.58115 -11.32836 -11.07286 -10.67471 -10.39283 -9.91018 -9.76436 -8.20737 -6.51197 1.20731 1.46827 1.48370 1.54064 1.60613 1.99966 2.09055 2.37620 2.56651 2.94975 3.22759 3.25390 3.66022 3.78462 3.80791 3.87806 3.97335 4.01264 4.09918 4.20571 4.29549 4.47401 4.56257 4.65358 4.71020 4.84674 4.87916 4.95205 4.98262 5.11116 5.14250 5.22121 5.33344 5.39153 5.41803 5.51524 5.65685 6.02965 6.29739 6.53679 6.88183 7.07324 7.19227 7.56418 8.72135 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.022350 B = 0.002884 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.483383 B = 9705.372900 C =10104.953661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.149 3.851 3 H 0.102 0.898 4 N -0.726 5.726 5 C 0.703 3.297 6 O -0.617 6.617 7 N -0.720 5.720 8 C 0.272 3.728 9 H 0.052 0.948 10 C -0.563 4.563 11 H 0.090 0.910 12 C 0.017 3.983 13 N -0.873 5.873 14 Si 0.983 3.017 15 H -0.269 1.269 16 H -0.283 1.283 17 H -0.261 1.261 18 C 0.412 3.588 19 F -0.205 7.205 20 F -0.150 7.150 21 F -0.218 7.218 22 C 0.530 3.470 23 O -0.570 6.570 24 N -0.615 5.615 25 C 0.081 3.919 26 C -0.122 4.122 27 C -0.127 4.127 28 C 0.097 3.903 29 H 0.065 0.935 30 H 0.096 0.904 31 H 0.061 0.939 32 H 0.409 0.591 33 H 0.409 0.591 34 H 0.269 0.731 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.109 0.891 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.829 -0.408 21.904 22.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.040 3.960 3 H 0.120 0.880 4 N -0.384 5.384 5 C 0.403 3.597 6 O -0.498 6.498 7 N -0.374 5.374 8 C 0.164 3.836 9 H 0.070 0.930 10 C -0.600 4.600 11 H 0.108 0.892 12 C -0.189 4.189 13 N -0.507 5.507 14 Si 0.807 3.193 15 H -0.195 1.195 16 H -0.209 1.209 17 H -0.185 1.185 18 C 0.356 3.644 19 F -0.187 7.187 20 F -0.131 7.131 21 F -0.200 7.200 22 C 0.318 3.682 23 O -0.449 6.449 24 N -0.348 5.348 25 C -0.041 4.041 26 C -0.160 4.160 27 C -0.165 4.165 28 C -0.025 4.025 29 H 0.084 0.916 30 H 0.115 0.885 31 H 0.080 0.920 32 H 0.246 0.754 33 H 0.244 0.756 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.106 0.894 37 H 0.113 0.887 38 H 0.117 0.883 39 H 0.127 0.873 40 H 0.090 0.910 41 H 0.097 0.903 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.916 0.183 21.630 21.827 hybrid contribution 0.673 -0.962 -1.019 1.554 sum -2.244 -0.779 20.611 20.748 Atomic orbital electron populations 1.22044 0.91309 1.03374 1.03946 1.20632 0.96804 0.96957 0.81643 0.87980 1.44764 1.71873 1.14364 1.07416 1.16028 0.78126 0.84734 0.80785 1.90876 1.58335 1.15550 1.84989 1.45025 1.69737 1.14259 1.08343 1.19212 0.87936 0.93702 0.82715 0.93041 1.21217 1.54692 0.94755 0.89301 0.89187 1.25972 0.93381 0.97483 1.02060 1.70527 1.43692 1.14602 1.21868 0.85162 0.78409 0.78567 0.77201 1.19453 1.20900 1.18498 1.23360 0.90708 0.77312 0.73068 1.92983 1.64084 1.65596 1.96009 1.93374 1.96203 1.80110 1.43403 1.93057 1.97116 1.70988 1.58827 1.20286 0.77304 0.86499 0.84122 1.90676 1.52952 1.16458 1.84861 1.48552 1.61283 1.13712 1.11265 1.22490 1.01883 0.80182 0.99554 1.22666 0.99675 1.00292 0.93368 1.22806 0.98759 0.93274 1.01643 1.22459 0.98036 0.97827 0.84178 0.91636 0.88516 0.92024 0.75401 0.75555 0.92101 0.91225 0.89368 0.88652 0.88286 0.87278 0.90983 0.90267 0.92020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 9.47 71.98 0.68 -2.75 16 2 C 0.15 4.09 2.47 44.25 0.11 4.20 16 3 H 0.10 2.94 6.62 -2.39 -0.02 2.93 16 4 N -0.73 -23.77 5.06 -461.40 -2.33 -26.10 16 5 C 0.70 29.06 8.06 179.06 1.44 30.51 16 6 O -0.62 -29.66 14.58 -3.98 -0.06 -29.72 16 7 N -0.72 -30.64 4.99 -461.42 -2.30 -32.95 16 8 C 0.27 13.93 2.21 44.25 0.10 14.02 16 9 H 0.05 3.00 7.58 -2.39 -0.02 2.98 16 10 C -0.56 -28.92 8.46 25.60 0.22 -28.70 16 11 H 0.09 4.30 7.74 -2.91 -0.02 4.27 16 12 C 0.02 0.86 5.20 84.65 0.44 1.30 16 13 N -0.87 -48.58 9.50 21.45 0.20 -48.37 16 14 Si 0.98 40.99 29.54 68.60 2.03 43.02 16 15 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 16 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 17 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 18 C 0.41 21.80 2.81 71.98 0.20 22.00 16 19 F -0.20 -10.34 16.94 44.97 0.76 -9.58 16 20 F -0.15 -8.53 12.91 44.97 0.58 -7.95 16 21 F -0.22 -11.45 15.67 44.97 0.70 -10.75 16 22 C 0.53 14.00 7.04 87.66 0.62 14.62 16 23 O -0.57 -18.50 16.33 -3.04 -0.05 -18.55 16 24 N -0.61 -12.03 3.33 -811.80 -2.70 -14.73 16 25 C 0.08 1.06 6.29 86.73 0.55 1.60 16 26 C -0.12 -0.89 6.95 31.78 0.22 -0.67 16 27 C -0.13 -1.13 7.08 31.99 0.23 -0.90 16 28 C 0.10 1.49 6.89 86.85 0.60 2.09 16 29 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.10 1.60 7.35 -2.39 -0.02 1.58 16 31 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.41 12.44 7.82 -92.71 -0.72 11.72 16 33 H 0.41 15.08 8.55 -92.71 -0.79 14.29 16 34 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 35 H 0.07 1.02 7.68 -2.39 -0.02 1.01 16 36 H 0.09 0.92 7.35 -2.39 -0.02 0.90 16 37 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.10 0.50 8.14 -2.38 -0.02 0.48 16 39 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.06 1.17 8.08 -2.39 -0.02 1.15 16 Total: -1.00 -70.56 357.18 1.80 -68.76 By element: Atomic # 1 Polarization: 30.02 SS G_CDS: -0.43 Total: 29.59 kcal Atomic # 6 Polarization: 51.93 SS G_CDS: 5.40 Total: 57.33 kcal Atomic # 7 Polarization: -115.02 SS G_CDS: -7.13 Total: -122.16 kcal Atomic # 8 Polarization: -48.16 SS G_CDS: -0.11 Total: -48.26 kcal Atomic # 9 Polarization: -30.33 SS G_CDS: 2.05 Total: -28.28 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 2.03 Total: 43.02 kcal Total: -70.56 1.80 -68.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932902503.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.317 kcal (2) G-P(sol) polarization free energy of solvation -70.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -222.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds