Wall clock time and date at job start Tue Mar 31 2020 21:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46873 * 2 1 4 4 N 1.46499 * 109.47349 * 239.99353 * 2 1 3 5 5 C 1.34777 * 119.99814 * 85.00430 * 4 2 1 6 6 O 1.21586 * 119.99813 * 359.97438 * 5 4 2 7 7 N 1.34772 * 119.99653 * 179.97438 * 5 4 2 8 8 C 1.46502 * 119.99642 * 179.72517 * 7 5 4 9 9 H 1.08996 * 109.47091 * 34.99756 * 8 7 5 10 10 C 1.50698 * 109.47071 * 155.00356 * 8 7 5 11 11 H 1.07997 * 119.99877 * 359.97438 * 10 8 7 12 12 C 1.37880 * 120.00225 * 179.97438 * 10 8 7 13 13 N 1.31519 * 119.99486 * 359.97438 * 12 10 8 14 14 Si 1.86797 * 120.00413 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47087 * 359.97438 * 14 12 10 16 16 H 1.48492 * 109.47086 * 119.99927 * 14 12 10 17 17 H 1.48500 * 109.46974 * 240.00197 * 14 12 10 18 18 C 1.53006 * 109.47136 * 274.99945 * 8 7 5 19 19 F 1.39902 * 109.46874 * 60.00123 * 18 8 7 20 20 F 1.39901 * 109.47191 * 180.02562 * 18 8 7 21 21 F 1.39903 * 109.47085 * 300.00309 * 18 8 7 22 22 C 1.50701 * 109.46447 * 119.99275 * 2 1 3 23 23 O 1.21287 * 119.99826 * 92.96672 * 22 2 1 24 24 N 1.34779 * 120.00405 * 272.95975 * 22 2 1 25 25 C 1.47020 * 125.64374 * 4.64698 * 24 22 2 26 26 C 1.54315 * 107.27562 * 180.96728 * 25 24 22 27 27 C 1.55162 * 102.86193 * 22.52924 * 26 25 24 28 28 C 1.47415 * 125.64955 * 184.95800 * 24 22 2 29 29 H 1.09002 * 109.47278 * 182.27365 * 1 2 3 30 30 H 1.09002 * 109.47717 * 302.28009 * 1 2 3 31 31 H 1.09006 * 109.46994 * 62.27592 * 1 2 3 32 32 H 0.96997 * 119.99767 * 265.00017 * 4 2 1 33 33 H 0.97002 * 120.00357 * 0.02562 * 7 5 4 34 34 H 0.97000 * 119.99628 * 179.97438 * 13 12 10 35 35 H 1.08992 * 109.88614 * 300.51516 * 25 24 22 36 36 H 1.09001 * 109.87991 * 61.68627 * 25 24 22 37 37 H 1.09003 * 110.92805 * 264.11606 * 26 25 24 38 38 H 1.08998 * 110.59136 * 140.78815 * 26 25 24 39 39 H 1.08995 * 111.00685 * 206.23067 * 27 26 25 40 40 H 1.09000 * 111.03739 * 82.38692 * 27 26 25 41 41 H 1.08998 * 110.37203 * 274.67190 * 28 24 22 42 42 H 1.09000 * 110.37006 * 36.89142 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1472 -0.0184 -2.3571 6 8 1.8576 1.1612 -2.4118 7 7 2.5970 -0.6538 -3.4572 8 6 2.7313 0.0755 -4.7207 9 1 3.0380 1.1014 -4.5172 10 6 3.7690 -0.5978 -5.5815 11 1 4.2778 -1.4804 -5.2230 12 6 4.0687 -0.0871 -6.8266 13 7 3.4486 0.9874 -7.2633 14 14 5.3555 -0.9212 -7.8933 15 1 5.9023 -2.1017 -7.1774 16 1 4.7330 -1.3594 -9.1683 17 1 6.4545 0.0349 -8.1819 18 6 1.3873 0.0805 -5.4521 19 9 0.4240 0.7055 -4.6530 20 9 1.5157 0.7764 -6.6589 21 9 0.9936 -1.2363 -5.7132 22 6 2.0322 -0.7103 1.2306 23 8 2.2855 -1.8956 1.1857 24 7 2.1999 -0.0285 2.3811 25 6 1.8428 1.3805 2.6018 26 6 2.2365 1.7313 4.0521 27 6 3.3169 0.6681 4.3834 28 6 2.7778 -0.5701 3.6244 29 1 -0.3634 -1.0269 0.0408 30 1 -0.3634 0.5488 0.8688 31 1 -0.3633 0.4781 -0.9097 32 1 2.2491 -1.6318 -1.1524 33 1 2.8276 -1.5950 -3.4136 34 1 3.6598 1.3470 -8.1391 35 1 2.3887 2.0151 1.9037 36 1 0.7696 1.5162 2.4681 37 1 1.3819 1.6344 4.7218 38 1 2.6558 2.7361 4.1031 39 1 3.3632 0.4792 5.4559 40 1 4.2918 0.9679 3.9991 41 1 2.0094 -1.0710 4.2132 42 1 3.5899 -1.2603 3.3961 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932902506.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:28 Heat of formation + Delta-G solvation = -198.111821 kcal Electronic energy + Delta-G solvation = -30656.079372 eV Core-core repulsion = 25836.033551 eV Total energy + Delta-G solvation = -4820.045821 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.29109 -45.94315 -45.56223 -40.56206 -39.22272 -37.65260 -35.19644 -34.23578 -32.65475 -32.09065 -30.42981 -29.26986 -27.88711 -25.19443 -24.52240 -23.11144 -21.72963 -21.32594 -20.16086 -19.52897 -18.62885 -17.26189 -16.93584 -16.78674 -16.63535 -16.51489 -16.22506 -15.46942 -14.96572 -14.90459 -14.68887 -14.26205 -13.95895 -13.76194 -13.66285 -13.27680 -13.01980 -12.93466 -12.84393 -12.53672 -12.35176 -12.29148 -12.25636 -12.22540 -11.93647 -11.77699 -11.72802 -11.65719 -11.59679 -11.15780 -11.13160 -10.84436 -10.76449 -10.37886 -9.97423 -9.62821 -9.56728 -8.96929 -8.86174 -8.70014 -8.16330 -6.21477 -4.44802 2.33057 2.57158 3.19555 3.24538 3.28304 3.33575 3.75892 4.04546 4.17503 4.21536 4.47774 4.52332 4.60690 4.82607 4.87290 4.95921 4.96871 5.10604 5.13055 5.26288 5.33104 5.43700 5.46159 5.53183 5.62000 5.73403 5.78112 5.88047 5.92704 5.99005 6.17642 6.26235 6.68113 6.86730 7.18752 7.22885 7.39825 7.64989 7.71110 7.88623 8.52433 8.66571 9.14983 9.25941 10.70108 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.019667 B = 0.002888 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.344866 B = 9693.786758 C =10230.673399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.154 3.846 3 H 0.108 0.892 4 N -0.740 5.740 5 C 0.703 3.297 6 O -0.585 6.585 7 N -0.724 5.724 8 C 0.262 3.738 9 H 0.086 0.914 10 C -0.551 4.551 11 H 0.078 0.922 12 C 0.064 3.936 13 N -0.840 5.840 14 Si 0.915 3.085 15 H -0.270 1.270 16 H -0.280 1.280 17 H -0.280 1.280 18 C 0.416 3.584 19 F -0.217 7.217 20 F -0.137 7.137 21 F -0.210 7.210 22 C 0.531 3.469 23 O -0.535 6.535 24 N -0.618 5.618 25 C 0.093 3.907 26 C -0.131 4.131 27 C -0.135 4.135 28 C 0.105 3.895 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.402 0.598 33 H 0.396 0.604 34 H 0.267 0.733 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.521 0.195 20.318 20.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.044 3.956 3 H 0.125 0.875 4 N -0.398 5.398 5 C 0.403 3.597 6 O -0.462 6.462 7 N -0.376 5.376 8 C 0.156 3.844 9 H 0.103 0.897 10 C -0.588 4.588 11 H 0.096 0.904 12 C -0.144 4.144 13 N -0.473 5.473 14 Si 0.742 3.258 15 H -0.194 1.194 16 H -0.206 1.206 17 H -0.206 1.206 18 C 0.359 3.641 19 F -0.199 7.199 20 F -0.118 7.118 21 F -0.192 7.192 22 C 0.319 3.681 23 O -0.411 6.411 24 N -0.354 5.354 25 C -0.030 4.030 26 C -0.169 4.169 27 C -0.173 4.173 28 C -0.017 4.017 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.238 0.762 33 H 0.229 0.771 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.698 0.768 19.941 20.137 hybrid contribution 0.466 -1.229 -0.674 1.477 sum -2.233 -0.461 19.266 19.401 Atomic orbital electron populations 1.22122 0.92985 1.02941 1.03567 1.20421 0.95501 0.97455 0.82255 0.87464 1.44874 1.72867 1.14146 1.07959 1.15962 0.78330 0.85206 0.80169 1.90903 1.56747 1.14125 1.84455 1.45252 1.69378 1.14104 1.08866 1.19621 0.88479 0.97173 0.79092 0.89655 1.20934 1.21971 1.14389 1.01511 0.90401 1.25080 0.96488 0.95298 0.97551 1.70422 1.37078 1.20265 1.19538 0.86153 0.80467 0.79319 0.79855 1.19406 1.20584 1.20585 1.23184 0.88465 0.72448 0.79991 1.93067 1.68739 1.83245 1.74819 1.93402 1.94824 1.78544 1.45072 1.92987 1.92596 1.38877 1.94727 1.20502 0.77156 0.86945 0.83508 1.90698 1.51054 1.15072 1.84231 1.48447 1.62723 1.12613 1.11600 1.22189 1.01004 0.82058 0.97766 1.22640 0.99281 0.99897 0.95094 1.22808 0.99053 0.94686 1.00728 1.22237 0.98174 0.96608 0.84704 0.91884 0.91668 0.89998 0.76189 0.77050 0.92209 0.90599 0.90782 0.90356 0.89687 0.89680 0.90373 0.91375 0.90319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 9.47 37.16 0.35 -1.61 16 2 C 0.15 2.14 2.47 -69.08 -0.17 1.97 16 3 H 0.11 1.52 6.63 -51.93 -0.34 1.18 16 4 N -0.74 -12.10 5.06 -59.81 -0.30 -12.40 16 5 C 0.70 14.37 8.06 -86.92 -0.70 13.67 16 6 O -0.58 -13.75 14.59 5.29 0.08 -13.67 16 7 N -0.72 -15.30 4.99 -59.81 -0.30 -15.60 16 8 C 0.26 6.61 2.21 -69.08 -0.15 6.46 16 9 H 0.09 2.39 7.57 -51.93 -0.39 2.00 16 10 C -0.55 -14.22 8.47 -34.44 -0.29 -14.52 16 11 H 0.08 1.91 7.74 -52.49 -0.41 1.51 16 12 C 0.06 1.69 5.20 -17.82 -0.09 1.60 16 13 N -0.84 -23.12 9.50 55.43 0.53 -22.59 16 14 Si 0.92 20.29 29.54 -169.99 -5.02 15.27 16 15 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 16 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 17 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 18 C 0.42 10.80 2.81 37.16 0.10 10.91 16 19 F -0.22 -5.57 15.69 2.25 0.04 -5.54 16 20 F -0.14 -3.83 12.91 2.25 0.03 -3.80 16 21 F -0.21 -5.28 16.94 2.25 0.04 -5.24 16 22 C 0.53 7.10 7.04 -10.98 -0.08 7.02 16 23 O -0.53 -8.66 16.34 5.55 0.09 -8.57 16 24 N -0.62 -6.34 3.33 -170.53 -0.57 -6.91 16 25 C 0.09 0.69 6.29 -3.07 -0.02 0.67 16 26 C -0.13 -0.66 6.95 -24.90 -0.17 -0.83 16 27 C -0.13 -0.74 7.08 -24.58 -0.17 -0.92 16 28 C 0.11 0.87 6.89 -2.53 -0.02 0.86 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.63 7.33 -51.93 -0.38 0.25 16 31 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.40 6.15 7.82 -40.82 -0.32 5.83 16 33 H 0.40 7.38 8.56 -40.82 -0.35 7.03 16 34 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 35 H 0.08 0.58 7.68 -51.93 -0.40 0.18 16 36 H 0.07 0.48 7.33 -51.93 -0.38 0.10 16 37 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.08 0.74 8.08 -51.93 -0.42 0.32 16 LS Contribution 357.17 15.07 5.38 5.38 Total: -1.00 -32.48 357.17 -6.91 -39.39 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -5.49 Total: 9.00 kcal Atomic # 6 Polarization: 26.69 SS G_CDS: -1.41 Total: 25.27 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: -0.64 Total: -57.50 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: 0.17 Total: -22.24 kcal Atomic # 9 Polarization: -14.68 SS G_CDS: 0.10 Total: -14.58 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.48 -6.91 -39.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932902506.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.718 kcal (2) G-P(sol) polarization free energy of solvation -32.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds