Wall clock time and date at job start Tue Mar 31 2020 21:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46873 * 2 1 4 4 N 1.46499 * 109.47349 * 239.99353 * 2 1 3 5 5 C 1.34777 * 119.99814 * 85.00430 * 4 2 1 6 6 O 1.21586 * 119.99813 * 359.97438 * 5 4 2 7 7 N 1.34772 * 119.99653 * 179.97438 * 5 4 2 8 8 C 1.46502 * 119.99642 * 179.72517 * 7 5 4 9 9 H 1.08996 * 109.47091 * 34.99756 * 8 7 5 10 10 C 1.50698 * 109.47071 * 155.00356 * 8 7 5 11 11 H 1.07997 * 119.99877 * 359.97438 * 10 8 7 12 12 C 1.37880 * 120.00225 * 179.97438 * 10 8 7 13 13 N 1.31519 * 119.99486 * 359.97438 * 12 10 8 14 14 Si 1.86797 * 120.00413 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47087 * 359.97438 * 14 12 10 16 16 H 1.48492 * 109.47086 * 119.99927 * 14 12 10 17 17 H 1.48500 * 109.46974 * 240.00197 * 14 12 10 18 18 C 1.53006 * 109.47136 * 274.99945 * 8 7 5 19 19 F 1.39902 * 109.46874 * 60.00123 * 18 8 7 20 20 F 1.39901 * 109.47191 * 180.02562 * 18 8 7 21 21 F 1.39903 * 109.47085 * 300.00309 * 18 8 7 22 22 C 1.50701 * 109.46447 * 119.99275 * 2 1 3 23 23 O 1.21287 * 119.99826 * 92.96672 * 22 2 1 24 24 N 1.34779 * 120.00405 * 272.95975 * 22 2 1 25 25 C 1.47020 * 125.64374 * 4.64698 * 24 22 2 26 26 C 1.54315 * 107.27562 * 180.96728 * 25 24 22 27 27 C 1.55162 * 102.86193 * 22.52924 * 26 25 24 28 28 C 1.47415 * 125.64955 * 184.95800 * 24 22 2 29 29 H 1.09002 * 109.47278 * 182.27365 * 1 2 3 30 30 H 1.09002 * 109.47717 * 302.28009 * 1 2 3 31 31 H 1.09006 * 109.46994 * 62.27592 * 1 2 3 32 32 H 0.96997 * 119.99767 * 265.00017 * 4 2 1 33 33 H 0.97002 * 120.00357 * 0.02562 * 7 5 4 34 34 H 0.97000 * 119.99628 * 179.97438 * 13 12 10 35 35 H 1.08992 * 109.88614 * 300.51516 * 25 24 22 36 36 H 1.09001 * 109.87991 * 61.68627 * 25 24 22 37 37 H 1.09003 * 110.92805 * 264.11606 * 26 25 24 38 38 H 1.08998 * 110.59136 * 140.78815 * 26 25 24 39 39 H 1.08995 * 111.00685 * 206.23067 * 27 26 25 40 40 H 1.09000 * 111.03739 * 82.38692 * 27 26 25 41 41 H 1.08998 * 110.37203 * 274.67190 * 28 24 22 42 42 H 1.09000 * 110.37006 * 36.89142 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1472 -0.0184 -2.3571 6 8 1.8576 1.1612 -2.4118 7 7 2.5970 -0.6538 -3.4572 8 6 2.7313 0.0755 -4.7207 9 1 3.0380 1.1014 -4.5172 10 6 3.7690 -0.5978 -5.5815 11 1 4.2778 -1.4804 -5.2230 12 6 4.0687 -0.0871 -6.8266 13 7 3.4486 0.9874 -7.2633 14 14 5.3555 -0.9212 -7.8933 15 1 5.9023 -2.1017 -7.1774 16 1 4.7330 -1.3594 -9.1683 17 1 6.4545 0.0349 -8.1819 18 6 1.3873 0.0805 -5.4521 19 9 0.4240 0.7055 -4.6530 20 9 1.5157 0.7764 -6.6589 21 9 0.9936 -1.2363 -5.7132 22 6 2.0322 -0.7103 1.2306 23 8 2.2855 -1.8956 1.1857 24 7 2.1999 -0.0285 2.3811 25 6 1.8428 1.3805 2.6018 26 6 2.2365 1.7313 4.0521 27 6 3.3169 0.6681 4.3834 28 6 2.7778 -0.5701 3.6244 29 1 -0.3634 -1.0269 0.0408 30 1 -0.3634 0.5488 0.8688 31 1 -0.3633 0.4781 -0.9097 32 1 2.2491 -1.6318 -1.1524 33 1 2.8276 -1.5950 -3.4136 34 1 3.6598 1.3470 -8.1391 35 1 2.3887 2.0151 1.9037 36 1 0.7696 1.5162 2.4681 37 1 1.3819 1.6344 4.7218 38 1 2.6558 2.7361 4.1031 39 1 3.3632 0.4792 5.4559 40 1 4.2918 0.9679 3.9991 41 1 2.0094 -1.0710 4.2132 42 1 3.5899 -1.2603 3.3961 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932902506.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:27 Heat of formation + Delta-G solvation = -220.996044 kcal Electronic energy + Delta-G solvation = -30657.071706 eV Core-core repulsion = 25836.033551 eV Total energy + Delta-G solvation = -4821.038155 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.38851 -48.02141 -47.70174 -41.66864 -40.63830 -38.52647 -36.80292 -35.84810 -34.51482 -33.02920 -31.63432 -29.99380 -29.57968 -26.58936 -26.14021 -24.24174 -23.19946 -22.11981 -21.75073 -20.61511 -20.09314 -18.91404 -18.84339 -18.60086 -18.14068 -17.80995 -17.49573 -17.07866 -16.66093 -16.13703 -16.07428 -15.60049 -15.25418 -14.98975 -14.93040 -14.56551 -14.50907 -14.43301 -14.30090 -14.27605 -14.00856 -13.92314 -13.87454 -13.78530 -13.32962 -13.20386 -13.06702 -12.78943 -12.67734 -12.63150 -12.21072 -12.17355 -12.13113 -11.57819 -11.55112 -11.33113 -11.06818 -10.69256 -10.39691 -9.90727 -9.75848 -8.20975 -6.51416 1.21725 1.46025 1.47435 1.53467 1.61402 1.95797 2.13557 2.37601 2.56779 2.94688 3.22458 3.25828 3.66770 3.79376 3.81244 3.88165 3.97113 4.00695 4.10195 4.21246 4.30153 4.47911 4.54983 4.65958 4.69619 4.85485 4.87786 4.95773 4.99026 5.11003 5.13985 5.22773 5.33524 5.39476 5.41813 5.51473 5.65609 6.02819 6.30198 6.53654 6.88671 7.07215 7.18998 7.56304 8.71911 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.019667 B = 0.002888 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.344866 B = 9693.786758 C =10230.673399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.149 3.851 3 H 0.105 0.895 4 N -0.726 5.726 5 C 0.703 3.297 6 O -0.617 6.617 7 N -0.720 5.720 8 C 0.271 3.729 9 H 0.051 0.949 10 C -0.562 4.562 11 H 0.090 0.910 12 C 0.016 3.984 13 N -0.873 5.873 14 Si 0.983 3.017 15 H -0.258 1.258 16 H -0.280 1.280 17 H -0.276 1.276 18 C 0.413 3.587 19 F -0.217 7.217 20 F -0.150 7.150 21 F -0.204 7.204 22 C 0.531 3.469 23 O -0.570 6.570 24 N -0.614 5.614 25 C 0.081 3.919 26 C -0.122 4.122 27 C -0.126 4.126 28 C 0.097 3.903 29 H 0.063 0.937 30 H 0.097 0.903 31 H 0.058 0.942 32 H 0.409 0.591 33 H 0.409 0.591 34 H 0.269 0.731 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.108 0.892 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.116 -0.217 22.091 22.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.040 3.960 3 H 0.123 0.877 4 N -0.384 5.384 5 C 0.403 3.597 6 O -0.498 6.498 7 N -0.374 5.374 8 C 0.164 3.836 9 H 0.069 0.931 10 C -0.599 4.599 11 H 0.108 0.892 12 C -0.189 4.189 13 N -0.507 5.507 14 Si 0.807 3.193 15 H -0.182 1.182 16 H -0.206 1.206 17 H -0.201 1.201 18 C 0.356 3.644 19 F -0.199 7.199 20 F -0.131 7.131 21 F -0.186 7.186 22 C 0.319 3.681 23 O -0.449 6.449 24 N -0.348 5.348 25 C -0.041 4.041 26 C -0.160 4.160 27 C -0.164 4.164 28 C -0.025 4.025 29 H 0.082 0.918 30 H 0.116 0.884 31 H 0.077 0.923 32 H 0.246 0.754 33 H 0.244 0.756 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.105 0.895 37 H 0.112 0.888 38 H 0.118 0.882 39 H 0.127 0.873 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.297 0.347 21.797 21.921 hybrid contribution 0.297 -1.055 -1.120 1.567 sum -1.999 -0.708 20.677 20.786 Atomic orbital electron populations 1.22050 0.91669 1.03245 1.03860 1.20618 0.96551 0.97101 0.81683 0.87715 1.44762 1.71818 1.14353 1.07477 1.16031 0.77990 0.84842 0.80805 1.90876 1.58131 1.15660 1.85088 1.45025 1.69733 1.14544 1.08061 1.19219 0.88027 0.95889 0.80500 0.93108 1.21246 1.22117 1.14746 1.01806 0.89246 1.25972 0.98333 0.95763 0.98848 1.70538 1.38545 1.21599 1.19974 0.85110 0.77798 0.78590 0.77813 1.18171 1.20611 1.20148 1.23324 0.88882 0.72477 0.79683 1.93061 1.68793 1.83311 1.74737 1.93376 1.94932 1.78895 1.45908 1.92985 1.92569 1.38381 1.94697 1.20259 0.77274 0.86490 0.84103 1.90679 1.52990 1.16375 1.84887 1.48546 1.61298 1.13739 1.11193 1.22489 1.01831 0.80207 0.99587 1.22664 0.99660 1.00338 0.93354 1.22805 0.98791 0.93228 1.01609 1.22459 0.98031 0.97855 0.84161 0.91796 0.88449 0.92301 0.75395 0.75556 0.92108 0.91035 0.89525 0.88776 0.88223 0.87347 0.90844 0.90392 0.91938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 9.47 71.98 0.68 -2.92 16 2 C 0.15 4.11 2.47 44.25 0.11 4.22 16 3 H 0.11 2.95 6.63 -2.39 -0.02 2.94 16 4 N -0.73 -23.76 5.06 -461.41 -2.33 -26.09 16 5 C 0.70 29.06 8.06 179.06 1.44 30.50 16 6 O -0.62 -29.65 14.59 -3.99 -0.06 -29.71 16 7 N -0.72 -30.65 4.99 -461.41 -2.30 -32.95 16 8 C 0.27 13.89 2.21 44.25 0.10 13.99 16 9 H 0.05 2.96 7.57 -2.39 -0.02 2.95 16 10 C -0.56 -28.94 8.47 25.60 0.22 -28.73 16 11 H 0.09 4.30 7.74 -2.91 -0.02 4.27 16 12 C 0.02 0.85 5.20 84.65 0.44 1.29 16 13 N -0.87 -48.54 9.50 21.45 0.20 -48.34 16 14 Si 0.98 41.06 29.54 68.60 2.03 43.09 16 15 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 16 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 17 H -0.28 -11.27 7.11 99.48 0.71 -10.57 16 18 C 0.41 21.75 2.81 71.98 0.20 21.95 16 19 F -0.22 -11.34 15.69 44.97 0.71 -10.63 16 20 F -0.15 -8.53 12.91 44.97 0.58 -7.95 16 21 F -0.20 -10.25 16.94 44.97 0.76 -9.49 16 22 C 0.53 13.87 7.04 87.66 0.62 14.49 16 23 O -0.57 -18.36 16.34 -3.05 -0.05 -18.41 16 24 N -0.61 -11.78 3.33 -811.83 -2.70 -14.48 16 25 C 0.08 1.03 6.29 86.73 0.55 1.57 16 26 C -0.12 -0.84 6.95 31.78 0.22 -0.62 16 27 C -0.13 -1.06 7.08 31.99 0.23 -0.84 16 28 C 0.10 1.46 6.89 86.86 0.60 2.06 16 29 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.10 1.68 7.33 -2.39 -0.02 1.66 16 31 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 32 H 0.41 12.43 7.82 -92.71 -0.73 11.71 16 33 H 0.41 15.09 8.56 -92.71 -0.79 14.29 16 34 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 35 H 0.07 1.00 7.68 -2.39 -0.02 0.98 16 36 H 0.09 0.90 7.33 -2.39 -0.02 0.88 16 37 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 38 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.06 1.15 8.08 -2.39 -0.02 1.13 16 Total: -1.00 -70.48 357.17 1.80 -68.68 By element: Atomic # 1 Polarization: 29.75 SS G_CDS: -0.43 Total: 29.32 kcal Atomic # 6 Polarization: 51.56 SS G_CDS: 5.40 Total: 56.96 kcal Atomic # 7 Polarization: -114.72 SS G_CDS: -7.13 Total: -121.86 kcal Atomic # 8 Polarization: -48.01 SS G_CDS: -0.11 Total: -48.12 kcal Atomic # 9 Polarization: -30.12 SS G_CDS: 2.05 Total: -28.07 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.09 kcal Total: -70.48 1.80 -68.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932902506.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.317 kcal (2) G-P(sol) polarization free energy of solvation -70.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -222.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds