Wall clock time and date at job start Tue Mar 31 2020 21:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46499 * 109.47126 * 2 1 4 4 C 1.46704 * 119.81237 * 270.02373 * 3 2 1 5 5 C 1.53036 * 109.06873 * 251.28389 * 4 3 2 6 6 C 1.52458 * 110.16882 * 271.32164 * 5 4 3 7 7 N 1.46327 * 111.64080 * 62.64429 * 6 5 4 8 8 C 1.34783 * 119.96086 * 117.01005 * 7 6 5 9 9 O 1.21581 * 120.00201 * 355.37658 * 8 7 6 10 10 N 1.34767 * 119.99602 * 175.37884 * 8 7 6 11 11 C 1.46505 * 120.00263 * 185.17114 * 10 8 7 12 12 H 1.09002 * 109.46823 * 325.00611 * 11 10 8 13 13 C 1.50694 * 109.47469 * 205.00186 * 11 10 8 14 14 H 1.07999 * 120.00273 * 0.02562 * 13 11 10 15 15 C 1.37881 * 119.99762 * 180.02562 * 13 11 10 16 16 N 1.31516 * 120.00139 * 359.97438 * 15 13 11 17 17 Si 1.86801 * 119.99702 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47127 * 89.99937 * 17 15 13 19 19 H 1.48503 * 109.46891 * 209.99664 * 17 15 13 20 20 H 1.48497 * 109.47359 * 329.99745 * 17 15 13 21 21 C 1.52996 * 109.46678 * 84.99946 * 11 10 8 22 22 F 1.39899 * 109.47147 * 60.00688 * 21 11 10 23 23 F 1.39905 * 109.46962 * 180.02562 * 21 11 10 24 24 F 1.39904 * 109.47550 * 300.00519 * 21 11 10 25 25 C 1.46663 * 120.22576 * 297.26352 * 7 6 5 26 26 C 1.34251 * 119.81821 * 89.99806 * 3 2 1 27 27 O 1.21282 * 120.34910 * 2.84628 * 26 3 2 28 28 H 1.09003 * 109.47450 * 60.00178 * 1 2 3 29 29 H 1.09001 * 109.47142 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47279 * 300.00155 * 1 2 3 31 31 H 1.08999 * 109.47279 * 239.99845 * 2 1 3 32 32 H 1.09006 * 109.47269 * 119.99323 * 2 1 3 33 33 H 1.09000 * 109.53504 * 11.15655 * 4 3 2 34 34 H 1.09001 * 109.54049 * 131.32622 * 4 3 2 35 35 H 1.08997 * 109.35812 * 31.53643 * 5 4 3 36 36 H 1.08997 * 109.35454 * 151.11242 * 5 4 3 37 37 H 1.09005 * 109.06861 * 183.18787 * 6 5 4 38 38 H 1.08998 * 109.07535 * 302.14265 * 6 5 4 39 39 H 0.97004 * 120.00577 * 5.17433 * 10 8 7 40 40 H 0.96999 * 120.00037 * 180.02562 * 16 15 13 41 41 H 1.09000 * 109.60150 * 321.98394 * 25 7 6 42 42 H 1.08998 * 109.60101 * 201.66344 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2609 2.0690 -1.2729 5 6 3.7695 2.2264 -1.4765 6 6 4.2525 3.5267 -0.8438 7 7 4.0408 3.5335 0.6040 8 6 5.0970 3.6043 1.4384 9 8 6.2274 3.5775 0.9917 10 7 4.8998 3.7046 2.7678 11 6 6.0419 3.8954 3.6654 12 1 6.9026 3.3493 3.2793 13 6 5.6940 3.3793 5.0378 14 1 4.7198 2.9515 5.2229 15 6 6.6195 3.4533 6.0572 16 7 7.8060 3.9737 5.8316 17 14 6.1884 2.8129 7.7582 18 1 6.5628 1.3793 7.8570 19 1 6.9312 3.5902 8.7826 20 1 4.7286 2.9602 7.9874 21 6 6.3797 5.3851 3.7512 22 9 5.2750 6.0860 4.2467 23 9 7.4707 5.5673 4.6078 24 9 6.7027 5.8643 2.4770 25 6 2.6825 3.4580 1.1520 26 6 2.2408 2.0106 1.1648 27 8 2.0890 1.4255 2.2162 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8901 33 1 1.8421 1.4818 -2.0901 34 1 1.7902 3.0520 -1.2517 35 1 4.2862 1.3857 -1.0136 36 1 3.9904 2.2402 -2.5438 37 1 5.3163 3.6485 -1.0480 38 1 3.7084 4.3615 -1.2857 39 1 4.0018 3.6504 3.1305 40 1 8.4572 4.0254 6.5487 41 1 2.0041 4.0418 0.5297 42 1 2.6759 3.8513 2.1685 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932908565.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:58 Heat of formation + Delta-G solvation = -183.268338 kcal Electronic energy + Delta-G solvation = -31829.845061 eV Core-core repulsion = 27010.442902 eV Total energy + Delta-G solvation = -4819.402159 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.30925 -45.96641 -45.56853 -40.76473 -39.12661 -36.75155 -35.48420 -34.63497 -32.87289 -32.06440 -30.94052 -28.36181 -27.53483 -25.79895 -24.49940 -23.36541 -22.57253 -21.13686 -19.72642 -19.00903 -18.55509 -17.40032 -16.94372 -16.79561 -16.57186 -16.44021 -16.03312 -15.32188 -15.11616 -14.75251 -14.66419 -14.15165 -13.99584 -13.89122 -13.50530 -13.26044 -13.09050 -12.89436 -12.71132 -12.55598 -12.43385 -12.37508 -12.36085 -12.20364 -11.96597 -11.84708 -11.71831 -11.52666 -11.21090 -11.16701 -11.06688 -10.77836 -10.77023 -10.32588 -10.12310 -9.60068 -9.56507 -8.88822 -8.67853 -8.57407 -8.14280 -6.17584 -4.40196 2.32116 2.80789 3.14123 3.24894 3.30835 3.35646 3.64071 4.22433 4.32535 4.37110 4.58757 4.63247 4.70681 4.74886 4.90459 4.99174 5.03274 5.08604 5.15898 5.19947 5.29785 5.43474 5.49052 5.55434 5.74426 5.82315 5.90675 5.93000 5.94556 6.03308 6.24605 6.34660 6.55967 6.84085 7.17961 7.21996 7.32118 7.61655 7.70259 8.08096 8.51588 8.60680 9.09657 9.27944 10.74192 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.014795 B = 0.004212 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.089367 B = 6645.763412 C = 7918.545055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.107 3.893 3 N -0.611 5.611 4 C 0.111 3.889 5 C -0.160 4.160 6 C 0.125 3.875 7 N -0.626 5.626 8 C 0.704 3.296 9 O -0.577 6.577 10 N -0.722 5.722 11 C 0.260 3.740 12 H 0.086 0.914 13 C -0.548 4.548 14 H 0.078 0.922 15 C 0.065 3.935 16 N -0.841 5.841 17 Si 0.915 3.085 18 H -0.276 1.276 19 H -0.283 1.283 20 H -0.270 1.270 21 C 0.416 3.584 22 F -0.210 7.210 23 F -0.136 7.136 24 F -0.219 7.219 25 C 0.096 3.904 26 C 0.502 3.498 27 O -0.526 6.526 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.067 0.933 39 H 0.396 0.604 40 H 0.267 0.733 41 H 0.100 0.900 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.111 -2.918 -15.042 20.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.016 4.016 3 N -0.345 5.345 4 C -0.012 4.012 5 C -0.199 4.199 6 C 0.002 3.998 7 N -0.366 5.366 8 C 0.406 3.594 9 O -0.453 6.453 10 N -0.376 5.376 11 C 0.154 3.846 12 H 0.104 0.896 13 C -0.585 4.585 14 H 0.096 0.904 15 C -0.143 4.143 16 N -0.475 5.475 17 Si 0.742 3.258 18 H -0.202 1.202 19 H -0.208 1.208 20 H -0.195 1.195 21 C 0.360 3.640 22 F -0.191 7.191 23 F -0.117 7.117 24 F -0.201 7.201 25 C -0.032 4.032 26 C 0.287 3.713 27 O -0.400 6.400 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.106 0.894 37 H 0.119 0.881 38 H 0.085 0.915 39 H 0.233 0.767 40 H 0.078 0.922 41 H 0.118 0.882 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -12.107 -3.144 -14.673 19.281 hybrid contribution -0.644 -0.013 0.930 1.132 sum -12.751 -3.156 -13.743 19.011 Atomic orbital electron populations 1.22122 0.95862 1.02170 1.02208 1.21456 0.94271 0.82533 1.03293 1.48010 1.66005 1.14279 1.06232 1.21739 0.96086 0.97982 0.85376 1.22384 0.95804 0.99898 1.01847 1.21217 1.04108 0.96142 0.78327 1.46951 1.03932 1.79545 1.06204 1.15981 0.84044 0.77571 0.81822 1.90899 1.20792 1.57627 1.76024 1.45464 1.11742 1.76240 1.04110 1.19642 0.87455 0.86604 0.90921 0.89613 1.20898 1.01997 1.43527 0.92116 0.90381 1.25065 0.94897 0.94320 1.00047 1.70403 1.04947 1.38708 1.33431 0.86207 0.78835 0.78805 0.81986 1.20214 1.20840 1.19454 1.23209 0.75030 0.93445 0.72337 1.92984 1.55566 1.82340 1.88256 1.93408 1.53872 1.95752 1.68680 1.93059 1.93133 1.90980 1.42918 1.21813 0.85512 0.93044 1.02821 1.21322 0.76656 0.89922 0.83373 1.90764 1.50799 1.67711 1.30698 0.92704 0.91668 0.92197 0.90716 0.89767 0.89620 0.90600 0.90534 0.89372 0.88102 0.91492 0.76736 0.92190 0.88246 0.87043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.32 10.24 37.16 0.38 -0.94 16 2 C 0.11 1.02 6.08 -4.04 -0.02 0.99 16 3 N -0.61 -6.46 2.47 -173.38 -0.43 -6.89 16 4 C 0.11 0.80 5.83 -3.91 -0.02 0.77 16 5 C -0.16 -1.38 5.93 -26.99 -0.16 -1.54 16 6 C 0.13 1.43 5.91 -4.41 -0.03 1.41 16 7 N -0.63 -9.42 2.70 -180.77 -0.49 -9.91 16 8 C 0.70 14.55 7.71 -86.92 -0.67 13.88 16 9 O -0.58 -13.87 14.49 5.29 0.08 -13.79 16 10 N -0.72 -15.81 4.86 -59.82 -0.29 -16.11 16 11 C 0.26 6.73 2.23 -69.08 -0.15 6.58 16 12 H 0.09 2.48 7.51 -51.93 -0.39 2.09 16 13 C -0.55 -14.65 8.46 -34.44 -0.29 -14.94 16 14 H 0.08 2.03 7.74 -52.49 -0.41 1.63 16 15 C 0.07 1.75 5.20 -17.82 -0.09 1.66 16 16 N -0.84 -23.58 9.50 55.43 0.53 -23.06 16 17 Si 0.92 20.92 29.54 -169.99 -5.02 15.90 16 18 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 21 C 0.42 10.89 2.81 37.16 0.10 10.99 16 22 F -0.21 -5.25 16.94 2.25 0.04 -5.21 16 23 F -0.14 -3.83 12.91 2.25 0.03 -3.80 16 24 F -0.22 -5.62 15.89 2.25 0.04 -5.58 16 25 C 0.10 1.21 5.45 -4.79 -0.03 1.18 16 26 C 0.50 7.04 7.27 -10.91 -0.08 6.96 16 27 O -0.53 -9.55 16.67 5.56 0.09 -9.45 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.54 8.02 -51.93 -0.42 0.13 16 32 H 0.08 1.01 7.38 -51.93 -0.38 0.63 16 33 H 0.09 0.42 7.90 -51.93 -0.41 0.01 16 34 H 0.08 0.45 6.72 -51.93 -0.35 0.10 16 35 H 0.08 0.88 8.04 -51.93 -0.42 0.46 16 36 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.10 1.39 6.88 -51.93 -0.36 1.03 16 38 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 39 H 0.40 7.97 6.08 -40.82 -0.25 7.72 16 40 H 0.27 7.09 8.31 -40.82 -0.34 6.76 16 41 H 0.10 0.87 7.17 -51.93 -0.37 0.50 16 42 H 0.11 1.52 5.86 -51.93 -0.30 1.22 16 LS Contribution 348.66 15.07 5.25 5.25 Total: -1.00 -34.00 348.66 -6.54 -40.54 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -5.30 Total: 5.11 kcal Atomic # 6 Polarization: 28.06 SS G_CDS: -1.06 Total: 27.00 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: -0.68 Total: -55.97 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: 0.17 Total: -23.25 kcal Atomic # 9 Polarization: -14.69 SS G_CDS: 0.10 Total: -14.59 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.00 -6.54 -40.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932908565.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.727 kcal (2) G-P(sol) polarization free energy of solvation -34.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds