Wall clock time and date at job start Tue Mar 31 2020 21:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46499 * 109.47126 * 2 1 4 4 C 1.46704 * 119.81237 * 270.02373 * 3 2 1 5 5 C 1.53036 * 109.06873 * 251.28389 * 4 3 2 6 6 C 1.52458 * 110.16882 * 271.32164 * 5 4 3 7 7 N 1.46327 * 111.64080 * 62.64429 * 6 5 4 8 8 C 1.34783 * 119.96086 * 117.01005 * 7 6 5 9 9 O 1.21581 * 120.00201 * 355.37658 * 8 7 6 10 10 N 1.34767 * 119.99602 * 175.37884 * 8 7 6 11 11 C 1.46505 * 120.00263 * 185.17114 * 10 8 7 12 12 H 1.09002 * 109.46823 * 325.00611 * 11 10 8 13 13 C 1.50694 * 109.47469 * 205.00186 * 11 10 8 14 14 H 1.07999 * 120.00273 * 0.02562 * 13 11 10 15 15 C 1.37881 * 119.99762 * 180.02562 * 13 11 10 16 16 N 1.31516 * 120.00139 * 359.97438 * 15 13 11 17 17 Si 1.86801 * 119.99702 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47127 * 89.99937 * 17 15 13 19 19 H 1.48503 * 109.46891 * 209.99664 * 17 15 13 20 20 H 1.48497 * 109.47359 * 329.99745 * 17 15 13 21 21 C 1.52996 * 109.46678 * 84.99946 * 11 10 8 22 22 F 1.39899 * 109.47147 * 60.00688 * 21 11 10 23 23 F 1.39905 * 109.46962 * 180.02562 * 21 11 10 24 24 F 1.39904 * 109.47550 * 300.00519 * 21 11 10 25 25 C 1.46663 * 120.22576 * 297.26352 * 7 6 5 26 26 C 1.34251 * 119.81821 * 89.99806 * 3 2 1 27 27 O 1.21282 * 120.34910 * 2.84628 * 26 3 2 28 28 H 1.09003 * 109.47450 * 60.00178 * 1 2 3 29 29 H 1.09001 * 109.47142 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47279 * 300.00155 * 1 2 3 31 31 H 1.08999 * 109.47279 * 239.99845 * 2 1 3 32 32 H 1.09006 * 109.47269 * 119.99323 * 2 1 3 33 33 H 1.09000 * 109.53504 * 11.15655 * 4 3 2 34 34 H 1.09001 * 109.54049 * 131.32622 * 4 3 2 35 35 H 1.08997 * 109.35812 * 31.53643 * 5 4 3 36 36 H 1.08997 * 109.35454 * 151.11242 * 5 4 3 37 37 H 1.09005 * 109.06861 * 183.18787 * 6 5 4 38 38 H 1.08998 * 109.07535 * 302.14265 * 6 5 4 39 39 H 0.97004 * 120.00577 * 5.17433 * 10 8 7 40 40 H 0.96999 * 120.00037 * 180.02562 * 16 15 13 41 41 H 1.09000 * 109.60150 * 321.98394 * 25 7 6 42 42 H 1.08998 * 109.60101 * 201.66344 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2609 2.0690 -1.2729 5 6 3.7695 2.2264 -1.4765 6 6 4.2525 3.5267 -0.8438 7 7 4.0408 3.5335 0.6040 8 6 5.0970 3.6043 1.4384 9 8 6.2274 3.5775 0.9917 10 7 4.8998 3.7046 2.7678 11 6 6.0419 3.8954 3.6654 12 1 6.9026 3.3493 3.2793 13 6 5.6940 3.3793 5.0378 14 1 4.7198 2.9515 5.2229 15 6 6.6195 3.4533 6.0572 16 7 7.8060 3.9737 5.8316 17 14 6.1884 2.8129 7.7582 18 1 6.5628 1.3793 7.8570 19 1 6.9312 3.5902 8.7826 20 1 4.7286 2.9602 7.9874 21 6 6.3797 5.3851 3.7512 22 9 5.2750 6.0860 4.2467 23 9 7.4707 5.5673 4.6078 24 9 6.7027 5.8643 2.4770 25 6 2.6825 3.4580 1.1520 26 6 2.2408 2.0106 1.1648 27 8 2.0890 1.4255 2.2162 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8901 33 1 1.8421 1.4818 -2.0901 34 1 1.7902 3.0520 -1.2517 35 1 4.2862 1.3857 -1.0136 36 1 3.9904 2.2402 -2.5438 37 1 5.3163 3.6485 -1.0480 38 1 3.7084 4.3615 -1.2857 39 1 4.0018 3.6504 3.1305 40 1 8.4572 4.0254 6.5487 41 1 2.0041 4.0418 0.5297 42 1 2.6759 3.8513 2.1685 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932908565.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:56 Heat of formation + Delta-G solvation = -206.861414 kcal Electronic energy + Delta-G solvation = -31830.868134 eV Core-core repulsion = 27010.442902 eV Total energy + Delta-G solvation = -4820.425231 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -50.43036 -48.06131 -47.73633 -41.93185 -40.50861 -37.85422 -36.70216 -36.42271 -34.59774 -33.22881 -31.84045 -30.21231 -28.50688 -26.87897 -26.53671 -24.17781 -23.93196 -22.73728 -21.17675 -20.25513 -19.79096 -18.92084 -18.85432 -18.66111 -18.34054 -17.62853 -17.53174 -17.01774 -16.58674 -16.22531 -16.00032 -15.43365 -15.06341 -14.98737 -14.85321 -14.81063 -14.55705 -14.47305 -14.34392 -14.27827 -14.18351 -14.04079 -13.91922 -13.50268 -13.40920 -13.21378 -13.06539 -12.82035 -12.65775 -12.59778 -12.31016 -12.23575 -11.97198 -11.88281 -11.60922 -11.27726 -11.17308 -10.70877 -10.22084 -9.77815 -9.59096 -8.23866 -6.54259 1.16779 1.43660 1.44241 1.56344 1.78084 1.95628 2.10149 2.34643 2.51223 2.88820 2.92174 3.42789 3.74941 3.79827 3.85083 3.92301 3.97705 4.15108 4.15261 4.28552 4.36821 4.41156 4.47245 4.57596 4.73054 4.79588 4.80450 4.93039 4.99234 5.03866 5.28038 5.31581 5.36463 5.40327 5.53385 5.62150 5.64196 5.81582 6.32663 6.50028 6.88463 7.09023 7.15568 7.49780 8.68935 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.014795 B = 0.004212 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.089367 B = 6645.763412 C = 7918.545055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.102 3.898 3 N -0.603 5.603 4 C 0.106 3.894 5 C -0.150 4.150 6 C 0.115 3.885 7 N -0.615 5.615 8 C 0.697 3.303 9 O -0.619 6.619 10 N -0.722 5.722 11 C 0.268 3.732 12 H 0.046 0.954 13 C -0.563 4.563 14 H 0.081 0.919 15 C 0.019 3.981 16 N -0.871 5.871 17 Si 0.981 3.019 18 H -0.272 1.272 19 H -0.277 1.277 20 H -0.263 1.263 21 C 0.417 3.583 22 F -0.202 7.202 23 F -0.149 7.149 24 F -0.217 7.217 25 C 0.095 3.905 26 C 0.493 3.507 27 O -0.581 6.581 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.034 0.966 31 H 0.104 0.896 32 H 0.048 0.952 33 H 0.123 0.877 34 H 0.102 0.898 35 H 0.042 0.958 36 H 0.125 0.875 37 H 0.071 0.929 38 H 0.110 0.890 39 H 0.405 0.595 40 H 0.270 0.730 41 H 0.152 0.848 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.656 -2.947 -17.005 23.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.021 4.021 3 N -0.335 5.335 4 C -0.015 4.015 5 C -0.189 4.189 6 C -0.007 4.007 7 N -0.354 5.354 8 C 0.399 3.601 9 O -0.499 6.499 10 N -0.377 5.377 11 C 0.160 3.840 12 H 0.064 0.936 13 C -0.599 4.599 14 H 0.099 0.901 15 C -0.187 4.187 16 N -0.505 5.505 17 Si 0.804 3.196 18 H -0.197 1.197 19 H -0.202 1.202 20 H -0.187 1.187 21 C 0.361 3.639 22 F -0.183 7.183 23 F -0.130 7.130 24 F -0.199 7.199 25 C -0.032 4.032 26 C 0.280 3.720 27 O -0.460 6.460 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.053 0.947 31 H 0.122 0.878 32 H 0.067 0.933 33 H 0.141 0.859 34 H 0.120 0.880 35 H 0.060 0.940 36 H 0.143 0.857 37 H 0.090 0.910 38 H 0.127 0.873 39 H 0.242 0.758 40 H 0.080 0.920 41 H 0.169 0.831 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -14.715 -3.176 -16.733 22.508 hybrid contribution 0.134 -0.020 1.387 1.394 sum -14.581 -3.196 -15.346 21.408 Atomic orbital electron populations 1.22039 0.94310 1.03010 1.02038 1.21591 0.95496 0.81960 1.03003 1.48172 1.64195 1.14597 1.06564 1.22101 0.95060 0.99838 0.84462 1.22334 0.96571 0.96661 1.03321 1.21625 1.03373 0.99518 0.76144 1.46980 1.03517 1.77809 1.07070 1.16214 0.84862 0.77332 0.81704 1.90862 1.22981 1.59431 1.76615 1.45262 1.11001 1.76823 1.04604 1.19183 0.87499 0.85956 0.91356 0.93596 1.21135 1.02277 1.43888 0.92645 0.90117 1.25937 0.94653 0.94247 1.03837 1.70516 1.05837 1.39548 1.34616 0.85194 0.78878 0.78252 0.77236 1.19714 1.20194 1.18685 1.23161 0.74843 0.93724 0.72195 1.92984 1.55051 1.82142 1.88173 1.93378 1.54601 1.95849 1.69160 1.93054 1.93147 1.90962 1.42731 1.22004 0.84747 0.93170 1.03262 1.21558 0.76451 0.90343 0.83688 1.90739 1.53543 1.68809 1.32860 0.90359 0.90440 0.94684 0.87762 0.93313 0.85903 0.87951 0.93958 0.85687 0.91009 0.87252 0.75751 0.91996 0.83077 0.88484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 10.24 71.98 0.74 -1.38 16 2 C 0.10 1.76 6.08 86.38 0.52 2.28 16 3 N -0.60 -11.33 2.47 -821.14 -2.03 -13.36 16 4 C 0.11 1.01 5.83 86.35 0.50 1.52 16 5 C -0.15 -2.10 5.93 30.43 0.18 -1.92 16 6 C 0.11 2.36 5.91 86.23 0.51 2.87 16 7 N -0.62 -17.94 2.70 -844.09 -2.28 -20.21 16 8 C 0.70 29.53 7.71 179.06 1.38 30.91 16 9 O -0.62 -31.03 14.49 -3.97 -0.06 -31.09 16 10 N -0.72 -32.67 4.86 -461.43 -2.24 -34.92 16 11 C 0.27 14.42 2.23 44.24 0.10 14.52 16 12 H 0.05 2.84 7.51 -2.39 -0.02 2.82 16 13 C -0.56 -30.78 8.46 25.60 0.22 -30.57 16 14 H 0.08 4.28 7.74 -2.91 -0.02 4.25 16 15 C 0.02 1.02 5.20 84.66 0.44 1.46 16 16 N -0.87 -49.91 9.50 21.45 0.20 -49.71 16 17 Si 0.98 43.09 29.54 68.60 2.03 45.12 16 18 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 19 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 20 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 21 C 0.42 22.40 2.81 71.98 0.20 22.60 16 22 F -0.20 -10.18 16.94 44.97 0.76 -9.41 16 23 F -0.15 -8.60 12.91 44.97 0.58 -8.02 16 24 F -0.22 -11.40 15.89 44.97 0.71 -10.69 16 25 C 0.09 2.23 5.45 85.80 0.47 2.69 16 26 C 0.49 13.45 7.27 87.94 0.64 14.09 16 27 O -0.58 -21.76 16.67 -3.04 -0.05 -21.81 16 28 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.03 0.65 8.14 -2.39 -0.02 0.64 16 31 H 0.10 1.18 8.02 -2.39 -0.02 1.16 16 32 H 0.05 1.20 7.38 -2.38 -0.02 1.18 16 33 H 0.12 0.39 7.90 -2.39 -0.02 0.37 16 34 H 0.10 0.54 6.72 -2.39 -0.02 0.52 16 35 H 0.04 0.91 8.04 -2.39 -0.02 0.89 16 36 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.07 1.94 6.88 -2.38 -0.02 1.93 16 38 H 0.11 1.37 8.08 -2.39 -0.02 1.36 16 39 H 0.40 16.74 6.08 -92.71 -0.56 16.18 16 40 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 41 H 0.15 1.97 7.17 -2.39 -0.02 1.95 16 42 H 0.10 2.60 5.86 -2.39 -0.01 2.59 16 Total: -1.00 -79.52 348.66 4.04 -75.48 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: 0.51 Total: 19.55 kcal Atomic # 6 Polarization: 53.18 SS G_CDS: 5.90 Total: 59.08 kcal Atomic # 7 Polarization: -111.86 SS G_CDS: -6.35 Total: -118.20 kcal Atomic # 8 Polarization: -52.79 SS G_CDS: -0.11 Total: -52.90 kcal Atomic # 9 Polarization: -30.18 SS G_CDS: 2.06 Total: -28.12 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -79.52 4.04 -75.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932908565.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.379 kcal (2) G-P(sol) polarization free energy of solvation -79.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds