Wall clock time and date at job start Tue Mar 31 2020 20:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.58595 * 2 1 4 4 C 1.53191 * 109.70491 * 239.64499 * 2 1 3 5 5 C 1.53036 * 109.31105 * 294.77418 * 4 2 1 6 6 C 1.53037 * 109.54327 * 298.63498 * 5 4 2 7 7 H 1.09001 * 109.49945 * 301.38140 * 6 5 4 8 8 C 1.50694 * 109.50245 * 181.31736 * 6 5 4 9 9 N 1.34777 * 120.00423 * 180.02562 * 8 6 5 10 10 O 1.21288 * 119.99934 * 359.97438 * 8 6 5 11 11 C 1.52767 * 109.38200 * 61.23741 * 6 5 4 12 12 N 1.46920 * 109.00852 * 305.59461 * 11 6 5 13 13 C 1.34775 * 120.62828 * 233.58408 * 12 11 6 14 14 O 1.21587 * 120.00298 * 184.97431 * 13 12 11 15 15 N 1.34785 * 120.00079 * 4.96536 * 13 12 11 16 16 C 1.46500 * 119.99817 * 185.04522 * 15 13 12 17 17 H 1.08992 * 109.47231 * 34.99863 * 16 15 13 18 18 C 1.50699 * 109.46925 * 155.00393 * 16 15 13 19 19 H 1.08001 * 120.00063 * 95.11918 * 18 16 15 20 20 C 1.37879 * 119.99675 * 275.11736 * 18 16 15 21 21 N 1.31514 * 120.00179 * 355.07425 * 20 18 16 22 22 Si 1.86801 * 119.99645 * 175.07391 * 20 18 16 23 23 H 1.48497 * 109.47210 * 60.00316 * 22 20 18 24 24 H 1.48497 * 109.46994 * 299.99862 * 22 20 18 25 25 H 1.48504 * 109.46997 * 180.02562 * 22 20 18 26 26 C 1.53006 * 109.46842 * 275.00074 * 16 15 13 27 27 F 1.39904 * 109.46698 * 295.12088 * 26 16 15 28 28 F 1.39897 * 109.47297 * 55.12333 * 26 16 15 29 29 F 1.39899 * 109.47122 * 175.12716 * 26 16 15 30 30 H 1.08998 * 109.47201 * 299.71613 * 1 2 3 31 31 H 1.08996 * 109.47103 * 59.71669 * 1 2 3 32 32 H 1.09002 * 109.46928 * 179.71885 * 1 2 3 33 33 H 1.08993 * 109.49867 * 54.72878 * 4 2 1 34 34 H 1.08999 * 109.49453 * 174.82709 * 4 2 1 35 35 H 1.09002 * 109.45946 * 58.65789 * 5 4 2 36 36 H 1.09002 * 109.46326 * 178.62743 * 5 4 2 37 37 H 0.96996 * 119.99636 * 359.97438 * 9 8 6 38 38 H 0.96998 * 120.00524 * 179.97438 * 9 8 6 39 39 H 1.08996 * 109.51186 * 185.70479 * 11 6 5 40 40 H 1.09006 * 109.42691 * 65.42614 * 11 6 5 41 41 H 0.97000 * 119.99695 * 5.04366 * 15 13 12 42 42 H 0.97000 * 119.99860 * 5.06394 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0465 -0.7288 -1.2445 5 6 1.6474 -2.2043 -1.1690 6 6 2.2858 -2.8448 0.0656 7 1 3.3696 -2.7442 0.0083 8 6 1.9186 -4.3053 0.1214 9 7 2.3712 -5.0760 1.1302 10 8 1.2150 -4.7870 -0.7411 11 6 1.7769 -2.1410 1.3223 12 7 2.0225 -0.6980 1.1954 13 6 2.6919 -0.0285 2.1545 14 8 2.8105 1.1795 2.0828 15 7 3.2298 -0.6979 3.1934 16 6 3.8609 0.0385 4.2915 17 1 3.3219 0.9705 4.4610 18 6 3.8237 -0.7984 5.5442 19 1 4.6734 -1.4095 5.8108 20 6 2.7050 -0.7839 6.3500 21 7 1.7098 0.0321 6.0789 22 14 2.6028 -1.9233 7.8267 23 1 3.7202 -1.6268 8.7589 24 1 2.6988 -3.3335 7.3714 25 1 1.3080 -1.7156 8.5235 26 6 5.3145 0.3488 3.9284 27 9 6.0333 -0.8466 3.8198 28 9 5.3549 1.0299 2.7070 29 9 5.8843 1.1465 4.9263 30 1 -0.3633 0.5094 0.8925 31 1 -0.3633 0.5182 -0.8874 32 1 -0.3633 -1.0277 -0.0050 33 1 1.6107 -0.2792 -2.1366 34 1 3.1326 -0.6476 -1.2891 35 1 0.5625 -2.2839 -1.0995 36 1 1.9926 -2.7202 -2.0650 37 1 2.9336 -4.6906 1.8201 38 1 2.1345 -6.0159 1.1663 39 1 2.3050 -2.5263 2.1945 40 1 0.7074 -2.3214 1.4310 41 1 3.1990 -1.6672 3.2140 42 1 1.7301 0.5704 5.2722 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932910892.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:26 Heat of formation + Delta-G solvation = -235.581860 kcal Electronic energy + Delta-G solvation = -31920.930960 eV Core-core repulsion = 27099.260317 eV Total energy + Delta-G solvation = -4821.670643 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.04754 -46.56972 -46.53678 -40.66135 -39.31257 -37.34182 -35.01926 -33.98428 -33.08789 -32.41785 -31.77301 -28.49429 -27.70048 -24.68936 -24.61323 -23.73531 -22.19997 -20.89426 -20.14761 -18.94559 -18.30725 -17.72710 -17.51476 -17.24392 -17.09497 -16.73876 -16.37500 -15.82393 -15.20413 -14.63594 -14.55327 -14.20233 -14.01627 -13.87010 -13.70639 -13.47086 -13.37354 -13.15134 -13.04231 -12.95261 -12.78901 -12.75021 -12.70600 -12.51064 -12.18316 -12.08203 -11.60341 -11.36860 -11.05754 -10.97528 -10.84293 -10.64292 -10.45388 -10.30179 -10.05092 -9.84922 -9.61953 -9.30496 -8.84445 -8.54225 -8.13260 -6.87700 -4.74021 2.43518 2.94954 3.21478 3.25102 3.38673 3.43293 3.64636 3.97250 4.17204 4.24186 4.46305 4.67341 4.71485 4.94430 4.97915 5.04658 5.14307 5.22461 5.24660 5.33669 5.39961 5.46892 5.52946 5.60750 5.69520 5.80706 5.88749 5.96861 6.08518 6.14389 6.40556 6.47423 6.60412 6.77362 7.12759 7.14386 7.27266 7.48575 7.91716 8.08374 8.29126 8.59258 9.06121 9.18268 10.49694 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.010840 B = 0.004834 C = 0.004208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2582.385092 B = 5791.115527 C = 6652.366700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.152 3.848 3 H 0.102 0.898 4 C -0.129 4.129 5 C -0.097 4.097 6 C -0.126 4.126 7 H 0.103 0.897 8 C 0.527 3.473 9 N -0.854 5.854 10 O -0.544 6.544 11 C 0.125 3.875 12 N -0.626 5.626 13 C 0.698 3.302 14 O -0.587 6.587 15 N -0.726 5.726 16 C 0.234 3.766 17 H 0.089 0.911 18 C -0.613 4.613 19 H 0.072 0.928 20 C 0.042 3.958 21 N -0.869 5.869 22 Si 1.076 2.924 23 H -0.281 1.281 24 H -0.282 1.282 25 H -0.279 1.279 26 C 0.436 3.564 27 F -0.196 7.196 28 F -0.193 7.193 29 F -0.188 7.188 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.405 0.595 38 H 0.401 0.599 39 H 0.084 0.916 40 H 0.072 0.928 41 H 0.388 0.612 42 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.300 -6.909 -9.521 11.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.048 3.952 3 H 0.120 0.880 4 C -0.167 4.167 5 C -0.135 4.135 6 C -0.149 4.149 7 H 0.121 0.879 8 C 0.311 3.689 9 N -0.417 5.417 10 O -0.420 6.420 11 C 0.000 4.000 12 N -0.365 5.365 13 C 0.400 3.600 14 O -0.465 6.465 15 N -0.383 5.383 16 C 0.131 3.869 17 H 0.107 0.893 18 C -0.651 4.651 19 H 0.090 0.910 20 C -0.169 4.169 21 N -0.501 5.501 22 Si 0.901 3.099 23 H -0.207 1.207 24 H -0.208 1.208 25 H -0.204 1.204 26 C 0.380 3.620 27 F -0.178 7.178 28 F -0.175 7.175 29 F -0.170 7.170 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.233 0.767 38 H 0.232 0.768 39 H 0.102 0.898 40 H 0.090 0.910 41 H 0.225 0.775 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.995 -6.472 -8.897 11.047 hybrid contribution 1.495 -0.341 -1.025 1.845 sum 0.500 -6.813 -9.922 12.046 Atomic orbital electron populations 1.22151 0.95413 1.02115 1.02314 1.20987 0.93685 0.97510 0.82993 0.88040 1.21971 1.01636 0.95233 0.97891 1.21341 1.01380 0.94797 0.96022 1.21713 1.03211 0.91168 0.98779 0.87903 1.20513 0.78838 0.88652 0.80889 1.43941 1.55224 1.14093 1.28481 1.90733 1.37428 1.75183 1.38672 1.21316 1.01337 0.81581 0.95757 1.47358 1.59970 1.07337 1.21820 1.16350 0.78233 0.85628 0.79748 1.90876 1.65401 1.12118 1.78070 1.46991 1.60349 1.09793 1.21120 1.19686 0.83046 0.97939 0.86272 0.89310 1.21882 1.05781 1.31342 1.06141 0.91002 1.26120 0.91871 0.97031 1.01919 1.70777 1.32784 1.20038 1.26457 0.83438 0.76816 0.74928 0.74686 1.20708 1.20833 1.20381 1.21864 0.93313 0.73370 0.73477 1.93045 1.81368 1.47428 1.95937 1.93144 1.97229 1.80805 1.46314 1.93083 1.87055 1.74796 1.62054 0.92068 0.91747 0.92385 0.90403 0.91427 0.90679 0.91085 0.76654 0.76808 0.89831 0.90983 0.77475 0.90928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 9.04 37.16 0.34 -1.63 16 2 C 0.15 2.08 3.18 -67.60 -0.22 1.86 16 3 H 0.10 1.60 7.04 -51.93 -0.37 1.23 16 4 C -0.13 -1.41 5.56 -26.61 -0.15 -1.56 16 5 C -0.10 -1.07 4.26 -26.69 -0.11 -1.18 16 6 C -0.13 -1.38 2.66 -91.88 -0.24 -1.63 16 7 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 8 C 0.53 6.01 7.43 -10.99 -0.08 5.93 16 9 N -0.85 -7.04 8.78 31.22 0.27 -6.77 16 10 O -0.54 -8.12 16.82 5.55 0.09 -8.03 16 11 C 0.12 1.56 5.13 -3.93 -0.02 1.54 16 12 N -0.63 -9.71 2.68 -171.17 -0.46 -10.17 16 13 C 0.70 14.02 7.81 -86.91 -0.68 13.34 16 14 O -0.59 -13.89 14.17 5.29 0.07 -13.81 16 15 N -0.73 -14.62 4.92 -59.81 -0.29 -14.92 16 16 C 0.23 5.45 1.78 -69.08 -0.12 5.33 16 17 H 0.09 2.36 6.17 -51.93 -0.32 2.04 16 18 C -0.61 -14.78 8.14 -34.44 -0.28 -15.06 16 19 H 0.07 1.72 7.42 -52.49 -0.39 1.33 16 20 C 0.04 1.04 5.45 -17.82 -0.10 0.94 16 21 N -0.87 -23.22 13.63 55.43 0.76 -22.46 16 22 Si 1.08 21.64 29.91 -169.99 -5.08 16.56 16 23 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 24 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 25 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 26 C 0.44 9.82 2.83 37.16 0.11 9.93 16 27 F -0.20 -4.16 16.62 2.25 0.04 -4.12 16 28 F -0.19 -4.42 15.35 2.25 0.03 -4.38 16 29 F -0.19 -4.33 17.14 2.25 0.04 -4.29 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.67 5.76 -51.93 -0.30 0.37 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.86 6.49 -51.93 -0.34 0.52 16 36 H 0.07 0.77 8.07 -51.93 -0.42 0.35 16 37 H 0.40 2.68 8.37 -40.82 -0.34 2.34 16 38 H 0.40 2.84 8.93 -40.82 -0.36 2.48 16 39 H 0.08 1.00 5.17 -51.93 -0.27 0.73 16 40 H 0.07 0.90 7.52 -51.93 -0.39 0.51 16 41 H 0.39 6.90 6.08 -40.82 -0.25 6.65 16 42 H 0.28 7.69 6.65 -40.82 -0.27 7.42 16 LS Contribution 348.98 15.07 5.26 5.26 Total: -1.00 -30.95 348.98 -5.76 -36.70 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -4.92 Total: 12.62 kcal Atomic # 6 Polarization: 19.38 SS G_CDS: -1.56 Total: 17.82 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: 0.28 Total: -54.32 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: 0.17 Total: -21.84 kcal Atomic # 9 Polarization: -12.90 SS G_CDS: 0.11 Total: -12.79 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.08 Total: 16.56 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.95 -5.76 -36.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932910892.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -198.879 kcal (2) G-P(sol) polarization free energy of solvation -30.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds