Wall clock time and date at job start Tue Mar 31 2020 20:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.58595 * 2 1 4 4 C 1.53191 * 109.70491 * 239.64499 * 2 1 3 5 5 C 1.53036 * 109.31105 * 294.77418 * 4 2 1 6 6 C 1.53037 * 109.54327 * 298.63498 * 5 4 2 7 7 H 1.09001 * 109.49945 * 301.38140 * 6 5 4 8 8 C 1.50694 * 109.50245 * 181.31736 * 6 5 4 9 9 N 1.34777 * 120.00423 * 180.02562 * 8 6 5 10 10 O 1.21288 * 119.99934 * 359.97438 * 8 6 5 11 11 C 1.52767 * 109.38200 * 61.23741 * 6 5 4 12 12 N 1.46920 * 109.00852 * 305.59461 * 11 6 5 13 13 C 1.34775 * 120.62828 * 233.58408 * 12 11 6 14 14 O 1.21587 * 120.00298 * 184.97431 * 13 12 11 15 15 N 1.34785 * 120.00079 * 4.96536 * 13 12 11 16 16 C 1.46500 * 119.99817 * 185.04522 * 15 13 12 17 17 H 1.08992 * 109.47231 * 34.99863 * 16 15 13 18 18 C 1.50699 * 109.46925 * 155.00393 * 16 15 13 19 19 H 1.08001 * 120.00063 * 95.11918 * 18 16 15 20 20 C 1.37879 * 119.99675 * 275.11736 * 18 16 15 21 21 N 1.31514 * 120.00179 * 355.07425 * 20 18 16 22 22 Si 1.86801 * 119.99645 * 175.07391 * 20 18 16 23 23 H 1.48497 * 109.47210 * 60.00316 * 22 20 18 24 24 H 1.48497 * 109.46994 * 299.99862 * 22 20 18 25 25 H 1.48504 * 109.46997 * 180.02562 * 22 20 18 26 26 C 1.53006 * 109.46842 * 275.00074 * 16 15 13 27 27 F 1.39904 * 109.46698 * 295.12088 * 26 16 15 28 28 F 1.39897 * 109.47297 * 55.12333 * 26 16 15 29 29 F 1.39899 * 109.47122 * 175.12716 * 26 16 15 30 30 H 1.08998 * 109.47201 * 299.71613 * 1 2 3 31 31 H 1.08996 * 109.47103 * 59.71669 * 1 2 3 32 32 H 1.09002 * 109.46928 * 179.71885 * 1 2 3 33 33 H 1.08993 * 109.49867 * 54.72878 * 4 2 1 34 34 H 1.08999 * 109.49453 * 174.82709 * 4 2 1 35 35 H 1.09002 * 109.45946 * 58.65789 * 5 4 2 36 36 H 1.09002 * 109.46326 * 178.62743 * 5 4 2 37 37 H 0.96996 * 119.99636 * 359.97438 * 9 8 6 38 38 H 0.96998 * 120.00524 * 179.97438 * 9 8 6 39 39 H 1.08996 * 109.51186 * 185.70479 * 11 6 5 40 40 H 1.09006 * 109.42691 * 65.42614 * 11 6 5 41 41 H 0.97000 * 119.99695 * 5.04366 * 15 13 12 42 42 H 0.97000 * 119.99860 * 5.06394 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0465 -0.7288 -1.2445 5 6 1.6474 -2.2043 -1.1690 6 6 2.2858 -2.8448 0.0656 7 1 3.3696 -2.7442 0.0083 8 6 1.9186 -4.3053 0.1214 9 7 2.3712 -5.0760 1.1302 10 8 1.2150 -4.7870 -0.7411 11 6 1.7769 -2.1410 1.3223 12 7 2.0225 -0.6980 1.1954 13 6 2.6919 -0.0285 2.1545 14 8 2.8105 1.1795 2.0828 15 7 3.2298 -0.6979 3.1934 16 6 3.8609 0.0385 4.2915 17 1 3.3219 0.9705 4.4610 18 6 3.8237 -0.7984 5.5442 19 1 4.6734 -1.4095 5.8108 20 6 2.7050 -0.7839 6.3500 21 7 1.7098 0.0321 6.0789 22 14 2.6028 -1.9233 7.8267 23 1 3.7202 -1.6268 8.7589 24 1 2.6988 -3.3335 7.3714 25 1 1.3080 -1.7156 8.5235 26 6 5.3145 0.3488 3.9284 27 9 6.0333 -0.8466 3.8198 28 9 5.3549 1.0299 2.7070 29 9 5.8843 1.1465 4.9263 30 1 -0.3633 0.5094 0.8925 31 1 -0.3633 0.5182 -0.8874 32 1 -0.3633 -1.0277 -0.0050 33 1 1.6107 -0.2792 -2.1366 34 1 3.1326 -0.6476 -1.2891 35 1 0.5625 -2.2839 -1.0995 36 1 1.9926 -2.7202 -2.0650 37 1 2.9336 -4.6906 1.8201 38 1 2.1345 -6.0159 1.1663 39 1 2.3050 -2.5263 2.1945 40 1 0.7074 -2.3214 1.4310 41 1 3.1990 -1.6672 3.2140 42 1 1.7301 0.5704 5.2722 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932910892.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:25 Heat of formation + Delta-G solvation = -257.997451 kcal Electronic energy + Delta-G solvation = -31921.902973 eV Core-core repulsion = 27099.260317 eV Total energy + Delta-G solvation = -4822.642656 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.88465 -48.40179 -48.37138 -41.85422 -40.52732 -38.62642 -36.78752 -34.97228 -34.54503 -33.62379 -33.08187 -30.13156 -28.84704 -26.52825 -25.78850 -24.77297 -23.82506 -22.22159 -21.26959 -20.49112 -19.65979 -19.33207 -19.13757 -18.94157 -18.31237 -17.99873 -17.66493 -17.11577 -16.41851 -16.00539 -15.75203 -15.70772 -15.47370 -15.31344 -15.11865 -15.00259 -14.88160 -14.82695 -14.70586 -14.58780 -14.55742 -14.37222 -13.94909 -13.82301 -13.40110 -13.16242 -13.05539 -12.62193 -12.48975 -12.36214 -12.07697 -11.88820 -11.81593 -11.45602 -11.33194 -11.08383 -10.98224 -10.70457 -10.66058 -10.17344 -9.53055 -8.84279 -6.71416 1.43242 1.58170 1.61941 1.73114 1.87316 1.94157 2.26160 2.50612 2.53109 2.79336 3.12256 3.37569 3.40665 3.50833 3.61642 3.72979 3.81397 3.95310 4.06755 4.21477 4.34131 4.37012 4.50630 4.57620 4.60362 4.70493 4.91096 4.97671 5.02234 5.08970 5.15726 5.29034 5.45790 5.53726 5.62397 5.89353 5.91973 6.01472 6.28183 6.38993 7.04422 7.16931 7.28965 7.60144 8.52099 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.010840 B = 0.004834 C = 0.004208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2582.385092 B = 5791.115527 C = 6652.366700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.145 3.855 3 H 0.076 0.924 4 C -0.117 4.117 5 C -0.094 4.094 6 C -0.118 4.118 7 H 0.112 0.888 8 C 0.530 3.470 9 N -0.837 5.837 10 O -0.580 6.580 11 C 0.123 3.877 12 N -0.618 5.618 13 C 0.693 3.307 14 O -0.628 6.628 15 N -0.720 5.720 16 C 0.241 3.759 17 H 0.051 0.949 18 C -0.616 4.616 19 H 0.077 0.923 20 C 0.004 3.996 21 N -0.899 5.899 22 Si 1.120 2.880 23 H -0.272 1.272 24 H -0.253 1.253 25 H -0.289 1.289 26 C 0.438 3.562 27 F -0.184 7.184 28 F -0.195 7.195 29 F -0.192 7.192 30 H 0.036 0.964 31 H 0.089 0.911 32 H 0.067 0.933 33 H 0.102 0.898 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.415 0.585 38 H 0.410 0.590 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.402 0.598 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.593 -9.119 -10.060 13.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.041 3.959 3 H 0.095 0.905 4 C -0.155 4.155 5 C -0.132 4.132 6 C -0.140 4.140 7 H 0.130 0.870 8 C 0.314 3.686 9 N -0.401 5.401 10 O -0.459 6.459 11 C -0.001 4.001 12 N -0.355 5.355 13 C 0.395 3.605 14 O -0.509 6.509 15 N -0.377 5.377 16 C 0.136 3.864 17 H 0.069 0.931 18 C -0.654 4.654 19 H 0.095 0.905 20 C -0.201 4.201 21 N -0.531 5.531 22 Si 0.940 3.060 23 H -0.197 1.197 24 H -0.177 1.177 25 H -0.215 1.215 26 C 0.382 3.618 27 F -0.166 7.166 28 F -0.177 7.177 29 F -0.174 7.174 30 H 0.055 0.945 31 H 0.108 0.892 32 H 0.086 0.914 33 H 0.120 0.880 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.245 0.755 38 H 0.242 0.758 39 H 0.107 0.893 40 H 0.094 0.906 41 H 0.241 0.759 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.681 -8.743 -9.456 12.896 hybrid contribution 1.438 0.373 -0.915 1.745 sum 0.756 -8.371 -10.371 13.349 Atomic orbital electron populations 1.22093 0.94071 1.02700 1.02343 1.21197 0.94718 0.96589 0.83350 0.90549 1.21896 1.01395 0.95131 0.97101 1.21315 1.01227 0.94467 0.96170 1.21625 1.03677 0.90904 0.97805 0.86991 1.20471 0.78444 0.88742 0.80957 1.43823 1.54231 1.14389 1.27625 1.90728 1.39228 1.75755 1.40219 1.21478 1.01844 0.79718 0.97045 1.47351 1.58427 1.08616 1.21128 1.16442 0.78501 0.85211 0.80299 1.90845 1.66944 1.14069 1.79086 1.46449 1.60430 1.10235 1.20606 1.19351 0.83164 0.96609 0.87323 0.93108 1.22024 1.05846 1.31007 1.06502 0.90513 1.27451 0.91312 0.97240 1.04097 1.70909 1.34250 1.21717 1.26273 0.82904 0.76440 0.74767 0.71924 1.19740 1.17714 1.21466 1.21729 0.93089 0.73616 0.73329 1.93060 1.81021 1.46640 1.95875 1.93141 1.97226 1.80924 1.46396 1.93073 1.87072 1.74992 1.62230 0.94526 0.89237 0.91447 0.88001 0.91836 0.90891 0.90451 0.75454 0.75824 0.89257 0.90565 0.75935 0.92864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 9.04 71.98 0.65 -2.94 16 2 C 0.14 3.86 3.18 44.97 0.14 4.00 16 3 H 0.08 2.45 7.04 -2.39 -0.02 2.44 16 4 C -0.12 -2.33 5.56 30.67 0.17 -2.16 16 5 C -0.09 -1.83 4.26 30.62 0.13 -1.70 16 6 C -0.12 -2.32 2.66 -11.61 -0.03 -2.35 16 7 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 8 C 0.53 10.88 7.43 87.65 0.65 11.53 16 9 N -0.84 -11.63 8.78 -173.53 -1.52 -13.15 16 10 O -0.58 -16.22 16.82 -3.06 -0.05 -16.28 16 11 C 0.12 2.88 5.13 86.22 0.44 3.32 16 12 N -0.62 -18.87 2.68 -813.71 -2.18 -21.06 16 13 C 0.69 28.20 7.81 179.05 1.40 29.60 16 14 O -0.63 -30.78 14.17 -3.99 -0.06 -30.84 16 15 N -0.72 -29.02 4.92 -461.40 -2.27 -31.29 16 16 C 0.24 11.36 1.78 44.25 0.08 11.44 16 17 H 0.05 2.82 6.17 -2.39 -0.01 2.81 16 18 C -0.62 -29.40 8.14 25.60 0.21 -29.19 16 19 H 0.08 3.56 7.42 -2.91 -0.02 3.54 16 20 C 0.00 0.19 5.45 84.66 0.46 0.65 16 21 N -0.90 -48.91 13.63 21.45 0.29 -48.62 16 22 Si 1.12 42.26 29.91 68.60 2.05 44.31 16 23 H -0.27 -9.83 7.11 99.48 0.71 -9.13 16 24 H -0.25 -8.32 7.11 99.48 0.71 -7.61 16 25 H -0.29 -11.35 7.11 99.48 0.71 -10.64 16 26 C 0.44 19.72 2.83 71.98 0.20 19.93 16 27 F -0.18 -7.57 16.62 44.97 0.75 -6.82 16 28 F -0.20 -8.97 15.35 44.97 0.69 -8.28 16 29 F -0.19 -8.84 17.14 44.97 0.77 -8.07 16 30 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.07 1.44 5.76 -2.39 -0.01 1.43 16 33 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.07 1.49 6.49 -2.39 -0.02 1.48 16 36 H 0.08 1.48 8.07 -2.39 -0.02 1.46 16 37 H 0.41 4.28 8.37 -92.71 -0.78 3.50 16 38 H 0.41 4.75 8.93 -92.71 -0.83 3.92 16 39 H 0.09 1.97 5.17 -2.39 -0.01 1.96 16 40 H 0.08 1.78 7.52 -2.38 -0.02 1.76 16 41 H 0.40 13.86 6.08 -92.71 -0.56 13.30 16 42 H 0.26 14.96 6.65 -92.71 -0.62 14.34 16 Total: -1.00 -67.95 348.98 2.08 -65.87 By element: Atomic # 1 Polarization: 32.97 SS G_CDS: -0.89 Total: 32.08 kcal Atomic # 6 Polarization: 37.63 SS G_CDS: 4.51 Total: 42.14 kcal Atomic # 7 Polarization: -108.42 SS G_CDS: -5.68 Total: -114.11 kcal Atomic # 8 Polarization: -47.01 SS G_CDS: -0.11 Total: -47.11 kcal Atomic # 9 Polarization: -25.38 SS G_CDS: 2.21 Total: -23.17 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.05 Total: 44.31 kcal Total: -67.95 2.08 -65.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932910892.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -192.126 kcal (2) G-P(sol) polarization free energy of solvation -67.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -260.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -257.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds