Wall clock time and date at job start Tue Mar 31 2020 19:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.47338 * 2 1 4 4 O 1.21277 * 120.00505 * 359.97438 * 3 2 1 5 5 N 1.34786 * 119.99851 * 180.02562 * 3 2 1 6 6 C 1.47426 * 125.64938 * 0.02562 * 5 3 2 7 7 C 1.54906 * 104.83277 * 204.09385 * 6 5 3 8 8 C 1.55151 * 101.58229 * 322.99395 * 7 6 5 9 9 H 1.09003 * 110.72041 * 277.13672 * 8 7 6 10 10 N 1.46504 * 110.71950 * 154.04268 * 8 7 6 11 11 C 1.34776 * 120.00299 * 86.45221 * 10 8 7 12 12 O 1.21593 * 119.99361 * 359.97438 * 11 10 8 13 13 N 1.34766 * 120.00215 * 179.97438 * 11 10 8 14 14 C 1.46504 * 120.00298 * 180.02562 * 13 11 10 15 15 H 1.08999 * 109.46826 * 325.00145 * 14 13 11 16 16 C 1.50690 * 109.47364 * 204.99947 * 14 13 11 17 17 H 1.08005 * 120.00148 * 265.30515 * 16 14 13 18 18 C 1.37884 * 119.99989 * 85.30919 * 16 14 13 19 19 N 1.31515 * 119.99866 * 185.04108 * 18 16 14 20 20 Si 1.86797 * 120.00018 * 5.03711 * 18 16 14 21 21 H 1.48503 * 109.46927 * 84.64711 * 20 18 16 22 22 H 1.48493 * 109.47006 * 204.64952 * 20 18 16 23 23 H 1.48503 * 109.47228 * 324.64962 * 20 18 16 24 24 C 1.53003 * 109.47202 * 84.99439 * 14 13 11 25 25 F 1.39902 * 109.46828 * 64.14496 * 24 14 13 26 26 F 1.39895 * 109.47232 * 184.14300 * 24 14 13 27 27 F 1.39895 * 109.47210 * 304.14775 * 24 14 13 28 28 C 1.47017 * 125.64560 * 179.71812 * 5 3 2 29 29 H 1.09000 * 109.46528 * 59.99821 * 1 2 3 30 30 H 1.08990 * 109.47456 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46715 * 300.00270 * 1 2 3 32 32 H 1.09000 * 109.47252 * 120.00360 * 2 1 3 33 33 H 1.08999 * 109.47421 * 239.99581 * 2 1 3 34 34 H 1.09007 * 110.36661 * 322.93551 * 6 5 3 35 35 H 1.08997 * 110.36192 * 85.14383 * 6 5 3 36 36 H 1.09006 * 111.00163 * 81.06625 * 7 6 5 37 37 H 1.08996 * 111.00532 * 204.87315 * 7 6 5 38 38 H 0.97001 * 119.99571 * 266.45102 * 10 8 7 39 39 H 0.97000 * 120.00216 * 359.97438 * 13 11 10 40 40 H 0.96997 * 119.99924 * 179.97438 * 19 18 16 41 41 H 1.09000 * 109.88508 * 298.38573 * 28 5 3 42 42 H 1.09002 * 109.88479 * 59.55611 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2444 2.3427 -0.0005 5 7 3.3575 1.6670 -0.0005 6 6 4.4211 0.6461 -0.0017 7 6 5.6541 1.3574 0.6094 8 6 5.5103 2.7874 0.0250 9 1 5.9233 2.8355 -0.9826 10 7 6.1582 3.7710 0.8962 11 6 7.4731 4.0318 0.7572 12 8 8.1217 3.4504 -0.0912 13 7 8.0690 4.9370 1.5583 14 6 9.4982 5.2210 1.4067 15 1 10.0227 4.3069 1.1287 16 6 10.0484 5.7392 2.7104 17 1 10.1140 6.8032 2.8840 18 6 10.4683 4.8550 3.6815 19 7 10.8553 5.3032 4.8558 20 14 10.4873 3.0206 3.3293 21 1 11.7551 2.6612 2.6446 22 1 10.3844 2.2703 4.6065 23 1 9.3374 2.6722 2.4565 24 6 9.6959 6.2745 0.3149 25 9 9.1028 7.4770 0.7144 26 9 11.0641 6.4768 0.1044 27 9 9.1016 5.8332 -0.8721 28 6 3.9817 2.9981 -0.0065 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 4.1305 -0.2053 0.6139 35 1 4.6343 0.3217 -1.0202 36 1 5.5967 1.3725 1.6979 37 1 6.5803 0.8895 0.2757 38 1 5.6407 4.2345 1.5732 39 1 7.5514 5.4011 2.2348 40 1 11.1503 4.6811 5.5391 41 1 3.6983 3.5364 -0.9109 42 1 3.6684 3.5584 0.8745 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932912897.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:00 Heat of formation + Delta-G solvation = -224.376496 kcal Electronic energy + Delta-G solvation = -30267.814301 eV Core-core repulsion = 25446.629559 eV Total energy + Delta-G solvation = -4821.184742 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.06702 -46.57428 -46.56320 -40.48513 -39.40597 -37.67546 -34.95135 -34.01632 -33.06360 -32.56235 -30.81398 -29.41346 -28.21693 -25.03642 -24.97413 -23.04118 -22.01345 -20.92978 -20.38974 -19.41290 -18.67214 -17.72236 -17.48119 -17.42341 -16.86534 -16.67477 -16.43138 -15.75008 -15.64627 -15.00841 -14.58328 -14.30653 -14.10992 -13.89433 -13.57815 -13.46568 -13.33441 -13.10004 -13.06694 -12.98638 -12.76194 -12.71704 -12.63363 -12.58700 -12.52247 -12.27461 -11.96620 -11.79396 -11.68431 -11.49854 -11.17897 -11.07288 -10.69687 -10.22121 -10.10175 -9.85221 -9.73479 -9.01930 -9.01450 -8.88025 -8.34634 -6.56721 -4.71782 2.37686 2.53817 3.03608 3.16688 3.19704 3.28281 3.57450 3.94440 4.07639 4.10114 4.33309 4.49126 4.54004 4.71572 4.74406 4.90059 4.92450 4.97355 5.02977 5.11112 5.16771 5.20480 5.30530 5.43802 5.46275 5.51089 5.57849 5.64910 5.80670 5.88597 5.93200 6.01542 6.27640 6.68168 6.84793 7.14958 7.19605 7.38252 7.87592 7.89504 8.49824 8.58175 8.98933 9.10837 10.51347 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.016587 B = 0.003017 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.652101 B = 9277.325600 C =10133.291081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.139 4.139 3 C 0.526 3.474 4 O -0.541 6.541 5 N -0.619 5.619 6 C 0.100 3.900 7 C -0.147 4.147 8 C 0.157 3.843 9 H 0.104 0.896 10 N -0.745 5.745 11 C 0.697 3.303 12 O -0.591 6.591 13 N -0.728 5.728 14 C 0.223 3.777 15 H 0.087 0.913 16 C -0.537 4.537 17 H 0.094 0.906 18 C 0.099 3.901 19 N -0.859 5.859 20 Si 0.872 3.128 21 H -0.267 1.267 22 H -0.283 1.283 23 H -0.252 1.252 24 C 0.439 3.561 25 F -0.190 7.190 26 F -0.185 7.185 27 F -0.194 7.194 28 C 0.103 3.897 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.395 0.605 39 H 0.396 0.604 40 H 0.275 0.725 41 H 0.077 0.923 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.994 -10.671 -6.807 18.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.179 4.179 3 C 0.315 3.685 4 O -0.418 6.418 5 N -0.354 5.354 6 C -0.023 4.023 7 C -0.187 4.187 8 C 0.050 3.950 9 H 0.122 0.878 10 N -0.402 5.402 11 C 0.397 3.603 12 O -0.470 6.470 13 N -0.383 5.383 14 C 0.119 3.881 15 H 0.105 0.895 16 C -0.575 4.575 17 H 0.112 0.888 18 C -0.111 4.111 19 N -0.492 5.492 20 Si 0.697 3.303 21 H -0.193 1.193 22 H -0.209 1.209 23 H -0.175 1.175 24 C 0.383 3.617 25 F -0.172 7.172 26 F -0.167 7.167 27 F -0.176 7.176 28 C -0.021 4.021 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.111 0.889 38 H 0.229 0.771 39 H 0.232 0.768 40 H 0.085 0.915 41 H 0.096 0.904 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.797 -10.720 -7.420 18.983 hybrid contribution -0.249 -0.327 0.460 0.617 sum -14.046 -11.047 -6.960 19.178 Atomic orbital electron populations 1.21542 0.92920 1.01627 1.03421 1.21613 0.98547 0.93416 1.04342 1.20513 0.80132 0.92034 0.75778 1.90715 1.54363 1.46772 1.49938 1.48490 1.05322 1.07900 1.73731 1.22406 0.86878 0.91601 1.01452 1.23278 0.97857 0.95992 1.01544 1.21608 0.90150 0.87518 0.95704 0.87794 1.45146 1.09025 1.45902 1.40123 1.16366 0.81103 0.80814 0.82006 1.90872 1.63520 1.54873 1.37686 1.46877 1.11388 1.42661 1.37366 1.19866 0.80941 0.93559 0.93707 0.89504 1.20801 1.43017 0.96553 0.97096 0.88776 1.24995 0.92396 0.99535 0.94187 1.69869 1.39133 1.36390 1.03769 0.86875 0.80660 0.84262 0.78501 1.19258 1.20857 1.17519 1.21628 0.73260 0.83519 0.83255 1.93078 1.84037 1.49406 1.90689 1.93098 1.32635 1.95566 1.95392 1.93139 1.84040 1.89297 1.51105 1.22077 0.91817 0.85141 1.03044 0.91953 0.91996 0.91949 0.88908 0.88890 0.90206 0.90704 0.90113 0.88852 0.77052 0.76807 0.91461 0.90442 0.90790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.20 37.16 0.34 -0.66 16 2 C -0.14 -0.98 5.43 -27.89 -0.15 -1.13 16 3 C 0.53 5.77 7.85 -10.98 -0.09 5.68 16 4 O -0.54 -8.06 16.31 5.56 0.09 -7.97 16 5 N -0.62 -6.18 3.33 -170.51 -0.57 -6.75 16 6 C 0.10 0.77 6.69 -2.53 -0.02 0.76 16 7 C -0.15 -1.52 6.77 -24.59 -0.17 -1.68 16 8 C 0.16 1.87 3.22 -66.09 -0.21 1.65 16 9 H 0.10 1.37 7.69 -51.93 -0.40 0.97 16 10 N -0.75 -10.31 5.21 -56.88 -0.30 -10.61 16 11 C 0.70 12.98 7.85 -86.93 -0.68 12.30 16 12 O -0.59 -12.91 14.67 5.28 0.08 -12.83 16 13 N -0.73 -14.16 4.93 -59.81 -0.30 -14.46 16 14 C 0.22 5.02 1.45 -69.08 -0.10 4.92 16 15 H 0.09 2.08 5.33 -51.93 -0.28 1.80 16 16 C -0.54 -13.41 8.68 -34.44 -0.30 -13.71 16 17 H 0.09 2.56 7.69 -52.48 -0.40 2.16 16 18 C 0.10 2.52 5.47 -17.82 -0.10 2.43 16 19 N -0.86 -23.15 13.96 55.43 0.77 -22.38 16 20 Si 0.87 19.59 26.92 -169.99 -4.58 15.02 16 21 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.25 -5.64 6.82 56.52 0.39 -5.26 16 24 C 0.44 9.66 2.83 37.16 0.11 9.77 16 25 F -0.19 -4.09 16.65 2.25 0.04 -4.05 16 26 F -0.19 -4.14 17.12 2.25 0.04 -4.10 16 27 F -0.19 -4.24 15.57 2.25 0.04 -4.20 16 28 C 0.10 1.10 6.63 -3.06 -0.02 1.08 16 29 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 32 H 0.09 0.50 7.85 -51.93 -0.41 0.09 16 33 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.46 7.48 -51.92 -0.39 0.07 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.40 4.52 8.35 -40.82 -0.34 4.18 16 39 H 0.40 6.92 8.61 -40.82 -0.35 6.57 16 40 H 0.28 6.92 8.31 -40.82 -0.34 6.59 16 41 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.07 0.80 7.70 -51.93 -0.40 0.40 16 LS Contribution 361.81 15.07 5.45 5.45 Total: -1.00 -31.58 361.81 -6.11 -37.69 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -5.50 Total: 7.79 kcal Atomic # 6 Polarization: 22.80 SS G_CDS: -1.39 Total: 21.41 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: -0.39 Total: -54.20 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: 0.17 Total: -20.80 kcal Atomic # 9 Polarization: -12.47 SS G_CDS: 0.11 Total: -12.36 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -4.58 Total: 15.02 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.58 -6.11 -37.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932912897.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -186.690 kcal (2) G-P(sol) polarization free energy of solvation -31.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -224.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds