Wall clock time and date at job start Tue Mar 31 2020 19:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.47338 * 2 1 4 4 O 1.21277 * 120.00505 * 359.97438 * 3 2 1 5 5 N 1.34786 * 119.99851 * 180.02562 * 3 2 1 6 6 C 1.47426 * 125.64938 * 0.02562 * 5 3 2 7 7 C 1.54906 * 104.83277 * 204.09385 * 6 5 3 8 8 C 1.55151 * 101.58229 * 322.99395 * 7 6 5 9 9 H 1.09003 * 110.72041 * 277.13672 * 8 7 6 10 10 N 1.46504 * 110.71950 * 154.04268 * 8 7 6 11 11 C 1.34776 * 120.00299 * 86.45221 * 10 8 7 12 12 O 1.21593 * 119.99361 * 359.97438 * 11 10 8 13 13 N 1.34766 * 120.00215 * 179.97438 * 11 10 8 14 14 C 1.46504 * 120.00298 * 180.02562 * 13 11 10 15 15 H 1.08999 * 109.46826 * 325.00145 * 14 13 11 16 16 C 1.50690 * 109.47364 * 204.99947 * 14 13 11 17 17 H 1.08005 * 120.00148 * 265.30515 * 16 14 13 18 18 C 1.37884 * 119.99989 * 85.30919 * 16 14 13 19 19 N 1.31515 * 119.99866 * 185.04108 * 18 16 14 20 20 Si 1.86797 * 120.00018 * 5.03711 * 18 16 14 21 21 H 1.48503 * 109.46927 * 84.64711 * 20 18 16 22 22 H 1.48493 * 109.47006 * 204.64952 * 20 18 16 23 23 H 1.48503 * 109.47228 * 324.64962 * 20 18 16 24 24 C 1.53003 * 109.47202 * 84.99439 * 14 13 11 25 25 F 1.39902 * 109.46828 * 64.14496 * 24 14 13 26 26 F 1.39895 * 109.47232 * 184.14300 * 24 14 13 27 27 F 1.39895 * 109.47210 * 304.14775 * 24 14 13 28 28 C 1.47017 * 125.64560 * 179.71812 * 5 3 2 29 29 H 1.09000 * 109.46528 * 59.99821 * 1 2 3 30 30 H 1.08990 * 109.47456 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46715 * 300.00270 * 1 2 3 32 32 H 1.09000 * 109.47252 * 120.00360 * 2 1 3 33 33 H 1.08999 * 109.47421 * 239.99581 * 2 1 3 34 34 H 1.09007 * 110.36661 * 322.93551 * 6 5 3 35 35 H 1.08997 * 110.36192 * 85.14383 * 6 5 3 36 36 H 1.09006 * 111.00163 * 81.06625 * 7 6 5 37 37 H 1.08996 * 111.00532 * 204.87315 * 7 6 5 38 38 H 0.97001 * 119.99571 * 266.45102 * 10 8 7 39 39 H 0.97000 * 120.00216 * 359.97438 * 13 11 10 40 40 H 0.96997 * 119.99924 * 179.97438 * 19 18 16 41 41 H 1.09000 * 109.88508 * 298.38573 * 28 5 3 42 42 H 1.09002 * 109.88479 * 59.55611 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2444 2.3427 -0.0005 5 7 3.3575 1.6670 -0.0005 6 6 4.4211 0.6461 -0.0017 7 6 5.6541 1.3574 0.6094 8 6 5.5103 2.7874 0.0250 9 1 5.9233 2.8355 -0.9826 10 7 6.1582 3.7710 0.8962 11 6 7.4731 4.0318 0.7572 12 8 8.1217 3.4504 -0.0912 13 7 8.0690 4.9370 1.5583 14 6 9.4982 5.2210 1.4067 15 1 10.0227 4.3069 1.1287 16 6 10.0484 5.7392 2.7104 17 1 10.1140 6.8032 2.8840 18 6 10.4683 4.8550 3.6815 19 7 10.8553 5.3032 4.8558 20 14 10.4873 3.0206 3.3293 21 1 11.7551 2.6612 2.6446 22 1 10.3844 2.2703 4.6065 23 1 9.3374 2.6722 2.4565 24 6 9.6959 6.2745 0.3149 25 9 9.1028 7.4770 0.7144 26 9 11.0641 6.4768 0.1044 27 9 9.1016 5.8332 -0.8721 28 6 3.9817 2.9981 -0.0065 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 4.1305 -0.2053 0.6139 35 1 4.6343 0.3217 -1.0202 36 1 5.5967 1.3725 1.6979 37 1 6.5803 0.8895 0.2757 38 1 5.6407 4.2345 1.5732 39 1 7.5514 5.4011 2.2348 40 1 11.1503 4.6811 5.5391 41 1 3.6983 3.5364 -0.9109 42 1 3.6684 3.5584 0.8745 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932912897.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:59 Heat of formation + Delta-G solvation = -247.238457 kcal Electronic energy + Delta-G solvation = -30268.805670 eV Core-core repulsion = 25446.629559 eV Total energy + Delta-G solvation = -4822.176111 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.85882 -48.36680 -48.34983 -41.46678 -40.69698 -38.68728 -36.61259 -35.26896 -34.44342 -33.70143 -31.88338 -30.67378 -29.39993 -26.89318 -25.78843 -23.74377 -23.52467 -22.23202 -21.74842 -20.41073 -20.12296 -19.37939 -19.09786 -18.63701 -18.34600 -18.26977 -17.61931 -17.00293 -16.52750 -16.28502 -16.02758 -15.61091 -15.34992 -15.27229 -15.20169 -14.85906 -14.78501 -14.66308 -14.55143 -14.48503 -14.44572 -14.28284 -13.85625 -13.66406 -13.41775 -13.15982 -13.04080 -12.96716 -12.63198 -12.56774 -12.50954 -12.06579 -11.99574 -11.91599 -11.81198 -11.34501 -10.97560 -10.95319 -10.33315 -9.86918 -9.73518 -8.53220 -6.72456 1.27282 1.36252 1.46336 1.52507 1.59015 1.93349 2.03628 2.20171 2.30625 2.85603 3.15751 3.28983 3.36459 3.38909 3.56657 3.74560 3.78558 4.01962 4.14009 4.20359 4.24554 4.28478 4.42204 4.53367 4.68107 4.73910 4.79473 4.94788 4.96453 5.01728 5.06150 5.08357 5.18543 5.36551 5.50450 5.54141 5.83923 6.10490 6.43562 6.45806 7.01082 7.09138 7.15034 7.62188 8.58822 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.016587 B = 0.003017 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.652101 B = 9277.325600 C =10133.291081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.132 4.132 3 C 0.519 3.481 4 O -0.590 6.590 5 N -0.619 5.619 6 C 0.106 3.894 7 C -0.144 4.144 8 C 0.155 3.845 9 H 0.092 0.908 10 N -0.729 5.729 11 C 0.697 3.303 12 O -0.622 6.622 13 N -0.728 5.728 14 C 0.233 3.767 15 H 0.077 0.923 16 C -0.539 4.539 17 H 0.064 0.936 18 C 0.062 3.938 19 N -0.899 5.899 20 Si 0.929 3.071 21 H -0.270 1.270 22 H -0.275 1.275 23 H -0.250 1.250 24 C 0.440 3.560 25 F -0.188 7.188 26 F -0.188 7.188 27 F -0.191 7.191 28 C 0.108 3.892 29 H 0.045 0.955 30 H 0.087 0.913 31 H 0.044 0.956 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.110 0.890 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.409 0.591 39 H 0.407 0.593 40 H 0.280 0.720 41 H 0.071 0.929 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.170 -13.229 -7.260 21.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.172 4.172 3 C 0.310 3.690 4 O -0.471 6.471 5 N -0.353 5.353 6 C -0.016 4.016 7 C -0.184 4.184 8 C 0.049 3.951 9 H 0.110 0.890 10 N -0.386 5.386 11 C 0.397 3.603 12 O -0.502 6.502 13 N -0.383 5.383 14 C 0.128 3.872 15 H 0.095 0.905 16 C -0.577 4.577 17 H 0.082 0.918 18 C -0.145 4.145 19 N -0.534 5.534 20 Si 0.752 3.248 21 H -0.195 1.195 22 H -0.200 1.200 23 H -0.174 1.174 24 C 0.384 3.616 25 F -0.169 7.169 26 F -0.170 7.170 27 F -0.173 7.173 28 C -0.016 4.016 29 H 0.064 0.936 30 H 0.106 0.894 31 H 0.064 0.936 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.128 0.872 35 H 0.110 0.890 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.245 0.755 39 H 0.244 0.756 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.010 -13.295 -7.863 21.538 hybrid contribution 0.069 0.536 0.537 0.761 sum -14.941 -12.759 -7.327 20.969 Atomic orbital electron populations 1.21552 0.93448 1.02739 1.01821 1.21695 0.98018 0.90809 1.06642 1.21320 0.79805 0.93267 0.74603 1.90696 1.55558 1.48553 1.52268 1.48585 1.05680 1.07954 1.73066 1.22542 0.84774 0.91385 1.02922 1.23221 0.98906 0.94757 1.01485 1.21702 0.90488 0.88114 0.94816 0.89038 1.44967 1.07412 1.45881 1.40303 1.16336 0.82310 0.80225 0.81381 1.90854 1.64679 1.55834 1.38849 1.46337 1.10408 1.43358 1.38202 1.19523 0.82181 0.93025 0.92505 0.90514 1.20713 1.43651 0.95180 0.98115 0.91779 1.25576 0.92036 1.02997 0.93853 1.69944 1.40815 1.37839 1.04790 0.85995 0.80351 0.79977 0.78451 1.19479 1.19974 1.17390 1.21565 0.73198 0.83546 0.83265 1.93082 1.83961 1.49203 1.90683 1.93091 1.32886 1.95586 1.95405 1.93144 1.83964 1.89282 1.50869 1.21914 0.90891 0.86037 1.02742 0.93563 0.89424 0.93643 0.86440 0.86360 0.87152 0.89001 0.90232 0.89591 0.75471 0.75578 0.91056 0.91019 0.90938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.20 71.98 0.66 -1.07 16 2 C -0.13 -1.41 5.43 29.85 0.16 -1.25 16 3 C 0.52 10.35 7.85 87.65 0.69 11.04 16 4 O -0.59 -17.35 16.31 -3.02 -0.05 -17.40 16 5 N -0.62 -10.85 3.33 -811.77 -2.70 -13.54 16 6 C 0.11 1.25 6.69 86.85 0.58 1.83 16 7 C -0.14 -2.60 6.77 31.98 0.22 -2.38 16 8 C 0.16 3.42 3.22 46.18 0.15 3.57 16 9 H 0.09 2.31 7.69 -2.39 -0.02 2.29 16 10 N -0.73 -19.04 5.21 -452.12 -2.36 -21.40 16 11 C 0.70 25.08 7.85 179.06 1.41 26.48 16 12 O -0.62 -26.42 14.67 -4.01 -0.06 -26.48 16 13 N -0.73 -27.62 4.93 -461.42 -2.28 -29.90 16 14 C 0.23 10.40 1.45 44.24 0.06 10.46 16 15 H 0.08 3.62 5.33 -2.39 -0.01 3.61 16 16 C -0.54 -27.10 8.68 25.60 0.22 -26.88 16 17 H 0.06 3.57 7.69 -2.91 -0.02 3.55 16 18 C 0.06 3.15 5.47 84.66 0.46 3.61 16 19 N -0.90 -48.86 13.96 21.45 0.30 -48.56 16 20 Si 0.93 40.05 26.92 68.60 1.85 41.89 16 21 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 22 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 23 H -0.25 -10.64 6.82 99.48 0.68 -9.96 16 24 C 0.44 19.20 2.83 71.98 0.20 19.40 16 25 F -0.19 -8.01 16.65 44.97 0.75 -7.26 16 26 F -0.19 -8.36 17.12 44.97 0.77 -7.59 16 27 F -0.19 -8.19 15.57 44.97 0.70 -7.49 16 28 C 0.11 2.17 6.63 86.73 0.58 2.74 16 29 H 0.05 0.72 8.10 -2.39 -0.02 0.70 16 30 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.04 0.72 8.10 -2.39 -0.02 0.70 16 32 H 0.12 0.72 7.85 -2.39 -0.02 0.70 16 33 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.11 0.71 7.48 -2.38 -0.02 0.70 16 35 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 37 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.41 8.62 8.35 -92.71 -0.77 7.85 16 39 H 0.41 13.82 8.61 -92.71 -0.80 13.02 16 40 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 41 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.07 1.48 7.70 -2.39 -0.02 1.47 16 Total: -1.00 -68.81 361.81 1.80 -67.01 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: -0.51 Total: 23.15 kcal Atomic # 6 Polarization: 42.18 SS G_CDS: 5.39 Total: 47.57 kcal Atomic # 7 Polarization: -106.37 SS G_CDS: -7.03 Total: -113.40 kcal Atomic # 8 Polarization: -43.77 SS G_CDS: -0.11 Total: -43.88 kcal Atomic # 9 Polarization: -24.55 SS G_CDS: 2.22 Total: -22.34 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 1.85 Total: 41.89 kcal Total: -68.81 1.80 -67.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932912897.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -180.228 kcal (2) G-P(sol) polarization free energy of solvation -68.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -249.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -247.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds