Wall clock time and date at job start Tue Mar 31 2020 19:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50698 * 109.47285 * 2 1 4 4 O 1.21282 * 119.99984 * 0.02562 * 3 2 1 5 5 N 1.34774 * 120.00235 * 179.97438 * 3 2 1 6 6 C 1.47422 * 125.64545 * 359.97438 * 5 3 2 7 7 C 1.54912 * 104.83500 * 155.90418 * 6 5 3 8 8 C 1.55162 * 101.57717 * 37.00946 * 7 6 5 9 9 H 1.09002 * 110.72059 * 82.86237 * 8 7 6 10 10 N 1.46502 * 110.72003 * 205.95874 * 8 7 6 11 11 C 1.34774 * 119.99871 * 271.16059 * 10 8 7 12 12 O 1.21591 * 120.00222 * 359.97438 * 11 10 8 13 13 N 1.34780 * 120.00010 * 179.97438 * 11 10 8 14 14 C 1.46497 * 120.00083 * 179.97438 * 13 11 10 15 15 H 1.09002 * 109.47577 * 325.00450 * 14 13 11 16 16 C 1.50697 * 109.47142 * 204.99873 * 14 13 11 17 17 H 1.07997 * 120.00358 * 0.02562 * 16 14 13 18 18 C 1.37881 * 119.99967 * 179.97438 * 16 14 13 19 19 N 1.31508 * 119.99859 * 0.02562 * 18 16 14 20 20 Si 1.86803 * 120.00035 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.46956 * 90.00408 * 20 18 16 22 22 H 1.48494 * 109.47107 * 210.00309 * 20 18 16 23 23 H 1.48502 * 109.47164 * 330.00327 * 20 18 16 24 24 C 1.53008 * 109.46994 * 85.00307 * 14 13 11 25 25 F 1.39896 * 109.46639 * 59.99709 * 24 14 13 26 26 F 1.39896 * 109.47015 * 179.97438 * 24 14 13 27 27 F 1.39898 * 109.46624 * 299.99957 * 24 14 13 28 28 C 1.47018 * 125.65380 * 180.02562 * 5 3 2 29 29 H 1.08998 * 109.47110 * 299.99954 * 1 2 3 30 30 H 1.09003 * 109.47277 * 59.99551 * 1 2 3 31 31 H 1.08992 * 109.47420 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47110 * 240.00046 * 2 1 3 33 33 H 1.09003 * 109.47277 * 120.00449 * 2 1 3 34 34 H 1.09003 * 110.37241 * 37.06786 * 6 5 3 35 35 H 1.09001 * 110.37136 * 274.74316 * 6 5 3 36 36 H 1.08999 * 111.00244 * 278.93675 * 7 6 5 37 37 H 1.09004 * 111.03866 * 155.09187 * 7 6 5 38 38 H 0.96999 * 120.00288 * 91.15410 * 10 8 7 39 39 H 0.97000 * 119.99584 * 359.97438 * 13 11 10 40 40 H 0.97005 * 120.00201 * 179.97438 * 19 18 16 41 41 H 1.09001 * 109.88087 * 61.60483 * 28 5 3 42 42 H 1.09003 * 109.87911 * 300.44635 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3574 1.6671 0.0005 6 6 4.4210 0.6462 0.0017 7 6 5.6540 1.3575 -0.6095 8 6 5.5101 2.7875 -0.0249 9 1 5.9231 2.8356 0.9827 10 7 6.1579 3.7712 -0.8961 11 6 7.4616 4.0673 -0.7255 12 8 8.1000 3.5184 0.1518 13 7 8.0578 4.9719 -1.5273 14 6 9.4747 5.2942 -1.3415 15 1 9.7194 5.2584 -0.2799 16 6 9.7494 6.6769 -1.8740 17 1 8.9485 7.2578 -2.3071 18 6 11.0230 7.2010 -1.8073 19 7 11.9981 6.4939 -1.2794 20 14 11.3633 8.9153 -2.4668 21 1 11.1649 9.9109 -1.3830 22 1 12.7635 8.9885 -2.9559 23 1 10.4321 9.2092 -3.5856 24 6 10.3324 4.2771 -2.0970 25 9 10.0184 4.3230 -3.4595 26 9 11.6855 4.5852 -1.9201 27 9 10.0774 2.9935 -1.6027 28 6 3.9816 2.9982 0.0011 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 4.1304 -0.2051 -0.6139 35 1 4.6357 0.3231 1.0203 36 1 5.5966 1.3726 -1.6979 37 1 6.5806 0.8904 -0.2756 38 1 5.6486 4.2093 -1.5958 39 1 7.5485 5.4095 -2.2274 40 1 12.8942 6.8624 -1.2328 41 1 3.6973 3.5405 0.9029 42 1 3.6690 3.5545 -0.8825 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932912899.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:10 Heat of formation + Delta-G solvation = -200.789391 kcal Electronic energy + Delta-G solvation = -30198.887264 eV Core-core repulsion = 25378.725335 eV Total energy + Delta-G solvation = -4820.161929 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.34367 -45.99702 -45.61170 -40.47964 -39.38090 -37.65311 -34.81129 -34.00824 -33.06291 -32.56592 -30.72045 -29.16273 -27.84053 -25.02807 -24.55143 -23.02951 -22.10937 -20.93212 -20.32612 -19.40644 -18.52429 -17.54193 -16.94836 -16.85092 -16.65578 -16.53786 -16.00719 -15.73033 -15.40512 -14.89081 -14.61590 -14.31449 -13.99626 -13.88276 -13.55240 -13.14976 -13.08628 -12.91460 -12.61479 -12.55600 -12.50003 -12.39809 -12.28727 -12.18361 -11.97973 -11.93486 -11.81828 -11.74826 -11.49639 -11.19026 -11.08260 -10.85835 -10.80773 -10.41727 -10.09738 -9.69408 -9.62103 -9.00724 -8.87114 -8.73205 -8.22368 -6.25385 -4.49165 2.38066 2.54943 3.15247 3.17974 3.24671 3.28126 3.66122 4.10247 4.17463 4.35087 4.52266 4.57136 4.68712 4.74423 4.76167 4.92057 4.93183 4.98051 5.05078 5.11766 5.31540 5.45627 5.51553 5.58197 5.65364 5.80496 5.83912 5.87710 5.89767 5.94783 6.02515 6.21136 6.67763 6.79917 7.15306 7.20228 7.32989 7.59759 7.64113 7.89787 8.47032 8.59375 9.09759 9.21179 10.66245 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.025337 B = 0.002509 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.840171 B =11155.194147 C =11789.248083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.139 4.139 3 C 0.526 3.474 4 O -0.541 6.541 5 N -0.619 5.619 6 C 0.099 3.901 7 C -0.147 4.147 8 C 0.158 3.842 9 H 0.107 0.893 10 N -0.745 5.745 11 C 0.701 3.299 12 O -0.582 6.582 13 N -0.725 5.725 14 C 0.263 3.737 15 H 0.085 0.915 16 C -0.552 4.552 17 H 0.077 0.923 18 C 0.065 3.935 19 N -0.839 5.839 20 Si 0.915 3.085 21 H -0.276 1.276 22 H -0.283 1.283 23 H -0.271 1.271 24 C 0.416 3.584 25 F -0.210 7.210 26 F -0.137 7.137 27 F -0.217 7.217 28 C 0.102 3.898 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.394 0.606 39 H 0.395 0.605 40 H 0.268 0.732 41 H 0.077 0.923 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.327 -11.320 0.672 19.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.179 4.179 3 C 0.315 3.685 4 O -0.418 6.418 5 N -0.355 5.355 6 C -0.024 4.024 7 C -0.187 4.187 8 C 0.051 3.949 9 H 0.124 0.876 10 N -0.401 5.401 11 C 0.401 3.599 12 O -0.459 6.459 13 N -0.378 5.378 14 C 0.157 3.843 15 H 0.103 0.897 16 C -0.589 4.589 17 H 0.095 0.905 18 C -0.144 4.144 19 N -0.472 5.472 20 Si 0.742 3.258 21 H -0.202 1.202 22 H -0.208 1.208 23 H -0.195 1.195 24 C 0.359 3.641 25 F -0.192 7.192 26 F -0.118 7.118 27 F -0.199 7.199 28 C -0.021 4.021 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.113 0.887 38 H 0.228 0.772 39 H 0.228 0.772 40 H 0.079 0.921 41 H 0.096 0.904 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.962 -11.351 1.542 18.844 hybrid contribution 0.105 0.973 -1.244 1.583 sum -14.858 -10.379 0.298 18.126 Atomic orbital electron populations 1.21542 0.92936 1.01625 1.03411 1.21614 0.98531 0.93423 1.04358 1.20511 0.80143 0.92031 0.75782 1.90716 1.54369 1.46783 1.49968 1.48489 1.05328 1.07929 1.73708 1.22415 0.86854 0.91595 1.01517 1.23287 0.97934 0.95957 1.01489 1.21616 0.90048 0.87417 0.95810 0.87553 1.45016 1.10190 1.46571 1.38361 1.16022 0.81057 0.80293 0.82514 1.90921 1.63567 1.55649 1.35718 1.45277 1.12584 1.43583 1.36310 1.19607 0.74235 0.92108 0.98389 0.89701 1.20873 0.96146 0.97843 1.44060 0.90492 1.25079 0.95581 0.98837 0.94918 1.70399 1.01706 1.35003 1.40131 0.86208 0.77853 0.82592 0.79153 1.20191 1.20799 1.19550 1.23182 0.82880 0.80541 0.77452 1.92983 1.93297 1.96571 1.36381 1.93402 1.32642 1.91220 1.94583 1.93067 1.94428 1.44675 1.87712 1.22086 0.91892 0.85119 1.03045 0.91951 0.91970 0.91996 0.88908 0.88865 0.90192 0.90649 0.90140 0.88705 0.77155 0.77175 0.92100 0.90433 0.90830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.20 37.16 0.34 -0.63 16 2 C -0.14 -0.95 5.42 -27.89 -0.15 -1.10 16 3 C 0.53 5.65 7.85 -10.99 -0.09 5.56 16 4 O -0.54 -7.95 16.31 5.56 0.09 -7.86 16 5 N -0.62 -6.03 3.33 -170.52 -0.57 -6.59 16 6 C 0.10 0.74 6.69 -2.53 -0.02 0.73 16 7 C -0.15 -1.46 6.77 -24.58 -0.17 -1.63 16 8 C 0.16 1.83 3.27 -66.09 -0.22 1.61 16 9 H 0.11 1.39 7.62 -51.93 -0.40 1.00 16 10 N -0.74 -9.97 5.20 -56.88 -0.30 -10.27 16 11 C 0.70 13.15 8.10 -86.92 -0.70 12.44 16 12 O -0.58 -13.13 14.60 5.29 0.08 -13.06 16 13 N -0.73 -14.27 4.99 -59.81 -0.30 -14.57 16 14 C 0.26 6.39 2.21 -69.08 -0.15 6.24 16 15 H 0.09 2.33 7.58 -51.93 -0.39 1.93 16 16 C -0.55 -13.82 8.46 -34.44 -0.29 -14.12 16 17 H 0.08 1.82 7.74 -52.49 -0.41 1.41 16 18 C 0.06 1.66 5.20 -17.82 -0.09 1.57 16 19 N -0.84 -22.73 9.50 55.43 0.53 -22.21 16 20 Si 0.92 19.88 29.54 -169.99 -5.02 14.85 16 21 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 22 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 24 C 0.42 10.49 2.81 37.16 0.10 10.59 16 25 F -0.21 -5.11 16.94 2.25 0.04 -5.07 16 26 F -0.14 -3.76 12.91 2.25 0.03 -3.73 16 27 F -0.22 -5.41 15.67 2.25 0.04 -5.37 16 28 C 0.10 1.07 6.62 -3.07 -0.02 1.05 16 29 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 30 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.09 0.48 7.85 -51.93 -0.41 0.07 16 33 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.44 7.48 -51.93 -0.39 0.05 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.39 4.25 8.36 -40.82 -0.34 3.91 16 39 H 0.39 6.65 8.55 -40.82 -0.35 6.30 16 40 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 41 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.07 0.77 7.71 -51.93 -0.40 0.37 16 LS Contribution 359.16 15.07 5.41 5.41 Total: -1.00 -32.55 359.16 -7.02 -39.57 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -5.59 Total: 6.56 kcal Atomic # 6 Polarization: 23.76 SS G_CDS: -1.45 Total: 22.31 kcal Atomic # 7 Polarization: -53.00 SS G_CDS: -0.63 Total: -53.63 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: 0.17 Total: -20.91 kcal Atomic # 9 Polarization: -14.27 SS G_CDS: 0.10 Total: -14.17 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.55 -7.02 -39.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932912899.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.216 kcal (2) G-P(sol) polarization free energy of solvation -32.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds