Wall clock time and date at job start Tue Mar 31 2020 19:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50698 * 109.47285 * 2 1 4 4 O 1.21282 * 119.99984 * 0.02562 * 3 2 1 5 5 N 1.34774 * 120.00235 * 179.97438 * 3 2 1 6 6 C 1.47422 * 125.64545 * 359.97438 * 5 3 2 7 7 C 1.54912 * 104.83500 * 155.90418 * 6 5 3 8 8 C 1.55162 * 101.57717 * 37.00946 * 7 6 5 9 9 H 1.09002 * 110.72059 * 82.86237 * 8 7 6 10 10 N 1.46502 * 110.72003 * 205.95874 * 8 7 6 11 11 C 1.34774 * 119.99871 * 271.16059 * 10 8 7 12 12 O 1.21591 * 120.00222 * 359.97438 * 11 10 8 13 13 N 1.34780 * 120.00010 * 179.97438 * 11 10 8 14 14 C 1.46497 * 120.00083 * 179.97438 * 13 11 10 15 15 H 1.09002 * 109.47577 * 325.00450 * 14 13 11 16 16 C 1.50697 * 109.47142 * 204.99873 * 14 13 11 17 17 H 1.07997 * 120.00358 * 0.02562 * 16 14 13 18 18 C 1.37881 * 119.99967 * 179.97438 * 16 14 13 19 19 N 1.31508 * 119.99859 * 0.02562 * 18 16 14 20 20 Si 1.86803 * 120.00035 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.46956 * 90.00408 * 20 18 16 22 22 H 1.48494 * 109.47107 * 210.00309 * 20 18 16 23 23 H 1.48502 * 109.47164 * 330.00327 * 20 18 16 24 24 C 1.53008 * 109.46994 * 85.00307 * 14 13 11 25 25 F 1.39896 * 109.46639 * 59.99709 * 24 14 13 26 26 F 1.39896 * 109.47015 * 179.97438 * 24 14 13 27 27 F 1.39898 * 109.46624 * 299.99957 * 24 14 13 28 28 C 1.47018 * 125.65380 * 180.02562 * 5 3 2 29 29 H 1.08998 * 109.47110 * 299.99954 * 1 2 3 30 30 H 1.09003 * 109.47277 * 59.99551 * 1 2 3 31 31 H 1.08992 * 109.47420 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47110 * 240.00046 * 2 1 3 33 33 H 1.09003 * 109.47277 * 120.00449 * 2 1 3 34 34 H 1.09003 * 110.37241 * 37.06786 * 6 5 3 35 35 H 1.09001 * 110.37136 * 274.74316 * 6 5 3 36 36 H 1.08999 * 111.00244 * 278.93675 * 7 6 5 37 37 H 1.09004 * 111.03866 * 155.09187 * 7 6 5 38 38 H 0.96999 * 120.00288 * 91.15410 * 10 8 7 39 39 H 0.97000 * 119.99584 * 359.97438 * 13 11 10 40 40 H 0.97005 * 120.00201 * 179.97438 * 19 18 16 41 41 H 1.09001 * 109.88087 * 61.60483 * 28 5 3 42 42 H 1.09003 * 109.87911 * 300.44635 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3574 1.6671 0.0005 6 6 4.4210 0.6462 0.0017 7 6 5.6540 1.3575 -0.6095 8 6 5.5101 2.7875 -0.0249 9 1 5.9231 2.8356 0.9827 10 7 6.1579 3.7712 -0.8961 11 6 7.4616 4.0673 -0.7255 12 8 8.1000 3.5184 0.1518 13 7 8.0578 4.9719 -1.5273 14 6 9.4747 5.2942 -1.3415 15 1 9.7194 5.2584 -0.2799 16 6 9.7494 6.6769 -1.8740 17 1 8.9485 7.2578 -2.3071 18 6 11.0230 7.2010 -1.8073 19 7 11.9981 6.4939 -1.2794 20 14 11.3633 8.9153 -2.4668 21 1 11.1649 9.9109 -1.3830 22 1 12.7635 8.9885 -2.9559 23 1 10.4321 9.2092 -3.5856 24 6 10.3324 4.2771 -2.0970 25 9 10.0184 4.3230 -3.4595 26 9 11.6855 4.5852 -1.9201 27 9 10.0774 2.9935 -1.6027 28 6 3.9816 2.9982 0.0011 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 4.1304 -0.2051 -0.6139 35 1 4.6357 0.3231 1.0203 36 1 5.5966 1.3726 -1.6979 37 1 6.5806 0.8904 -0.2756 38 1 5.6486 4.2093 -1.5958 39 1 7.5485 5.4095 -2.2274 40 1 12.8942 6.8624 -1.2328 41 1 3.6973 3.5405 0.9029 42 1 3.6690 3.5545 -0.8825 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932912899.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:09 Heat of formation + Delta-G solvation = -223.950209 kcal Electronic energy + Delta-G solvation = -30199.891592 eV Core-core repulsion = 25378.725335 eV Total energy + Delta-G solvation = -4821.166257 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.37447 -48.00555 -47.69063 -41.45627 -40.67751 -38.66165 -36.50865 -35.27937 -34.42016 -33.67688 -31.72079 -30.35543 -29.24790 -26.56940 -25.77245 -23.76181 -23.69435 -22.19714 -21.76428 -20.25185 -20.00702 -18.85155 -18.78032 -18.55208 -18.32330 -17.73799 -17.53293 -16.86906 -16.53060 -16.42228 -15.86370 -15.56560 -15.36614 -15.03312 -14.91207 -14.65005 -14.54169 -14.41767 -14.26884 -14.19229 -13.99309 -13.84899 -13.83264 -13.40943 -13.15333 -13.06089 -13.02726 -12.75071 -12.63551 -12.55494 -12.54323 -12.20645 -12.05107 -11.89742 -11.56971 -11.26859 -10.94820 -10.67058 -10.31107 -9.84177 -9.71773 -8.20176 -6.50425 1.45979 1.48278 1.52921 1.59758 1.61303 2.04511 2.14308 2.37968 2.58928 2.95992 3.28755 3.31730 3.57698 3.79613 3.82543 3.90920 4.03125 4.14764 4.21735 4.23388 4.26021 4.30124 4.54540 4.69511 4.72701 4.80215 4.90788 4.97727 5.03819 5.07619 5.10025 5.19843 5.37780 5.44551 5.50626 5.55946 5.66976 6.09621 6.44861 6.54683 7.10360 7.15176 7.20938 7.64474 8.72461 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.025337 B = 0.002509 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.840171 B =11155.194147 C =11789.248083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.133 4.133 3 C 0.519 3.481 4 O -0.590 6.590 5 N -0.619 5.619 6 C 0.105 3.895 7 C -0.144 4.144 8 C 0.155 3.845 9 H 0.090 0.910 10 N -0.724 5.724 11 C 0.700 3.300 12 O -0.622 6.622 13 N -0.721 5.721 14 C 0.272 3.728 15 H 0.047 0.953 16 C -0.561 4.561 17 H 0.091 0.909 18 C 0.015 3.985 19 N -0.874 5.874 20 Si 0.982 3.018 21 H -0.271 1.271 22 H -0.285 1.285 23 H -0.259 1.259 24 C 0.413 3.587 25 F -0.204 7.204 26 F -0.152 7.152 27 F -0.217 7.217 28 C 0.108 3.892 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.087 0.913 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.112 0.888 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.410 0.590 39 H 0.410 0.590 40 H 0.268 0.732 41 H 0.071 0.929 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.720 -12.072 -0.297 20.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.172 4.172 3 C 0.310 3.690 4 O -0.471 6.471 5 N -0.353 5.353 6 C -0.017 4.017 7 C -0.183 4.183 8 C 0.049 3.951 9 H 0.108 0.892 10 N -0.381 5.381 11 C 0.400 3.600 12 O -0.502 6.502 13 N -0.375 5.375 14 C 0.164 3.836 15 H 0.065 0.935 16 C -0.598 4.598 17 H 0.109 0.891 18 C -0.190 4.190 19 N -0.508 5.508 20 Si 0.805 3.195 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.183 1.183 24 C 0.357 3.643 25 F -0.186 7.186 26 F -0.133 7.133 27 F -0.199 7.199 28 C -0.016 4.016 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.106 0.894 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.130 0.870 35 H 0.108 0.892 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.247 0.753 39 H 0.246 0.754 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -16.415 -12.129 0.547 20.417 hybrid contribution 0.502 1.150 -0.915 1.553 sum -15.913 -10.979 -0.368 19.337 Atomic orbital electron populations 1.21552 0.93437 1.02741 1.01828 1.21698 0.98024 0.90827 1.06646 1.21312 0.79791 0.93263 0.74606 1.90696 1.55535 1.48546 1.52279 1.48581 1.05679 1.07961 1.73059 1.22543 0.84788 0.91437 1.02885 1.23219 0.98804 0.94641 1.01625 1.21703 0.90486 0.88120 0.94819 0.89215 1.44812 1.08310 1.46371 1.38569 1.16138 0.82321 0.79756 0.81777 1.90894 1.65011 1.56993 1.37327 1.45007 1.11128 1.44182 1.37146 1.19159 0.76418 0.92030 0.96036 0.93499 1.21215 0.96636 0.98149 1.43759 0.89069 1.25975 0.95468 1.02552 0.95040 1.70528 1.02056 1.36801 1.41374 0.85181 0.77546 0.77922 0.78807 1.19648 1.21049 1.18328 1.23312 0.82432 0.80725 0.77833 1.92982 1.93182 1.96563 1.35848 1.93373 1.33833 1.91379 1.94714 1.93060 1.94364 1.44713 1.87764 1.21916 0.90804 0.86018 1.02832 0.93606 0.93580 0.89431 0.86369 0.86439 0.87020 0.89174 0.89908 0.89826 0.75304 0.75402 0.92179 0.91114 0.90669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.20 71.98 0.66 -1.04 16 2 C -0.13 -1.39 5.42 29.85 0.16 -1.23 16 3 C 0.52 10.24 7.85 87.66 0.69 10.93 16 4 O -0.59 -17.16 16.31 -3.04 -0.05 -17.21 16 5 N -0.62 -10.78 3.33 -811.81 -2.70 -13.48 16 6 C 0.11 1.26 6.69 86.86 0.58 1.84 16 7 C -0.14 -2.60 6.77 31.99 0.22 -2.39 16 8 C 0.16 3.47 3.27 46.18 0.15 3.62 16 9 H 0.09 2.36 7.62 -2.39 -0.02 2.34 16 10 N -0.72 -18.79 5.20 -452.13 -2.35 -21.14 16 11 C 0.70 26.23 8.10 179.05 1.45 27.68 16 12 O -0.62 -28.67 14.60 -4.00 -0.06 -28.73 16 13 N -0.72 -28.17 4.99 -461.40 -2.30 -30.47 16 14 C 0.27 13.37 2.21 44.25 0.10 13.46 16 15 H 0.05 2.68 7.58 -2.39 -0.02 2.66 16 16 C -0.56 -27.86 8.46 25.60 0.22 -27.64 16 17 H 0.09 4.17 7.74 -2.91 -0.02 4.15 16 18 C 0.02 0.77 5.20 84.66 0.44 1.21 16 19 N -0.87 -47.96 9.50 21.45 0.20 -47.75 16 20 Si 0.98 40.17 29.54 68.60 2.03 42.19 16 21 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 22 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 23 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 24 C 0.41 21.04 2.81 71.98 0.20 21.25 16 25 F -0.20 -9.79 16.94 44.97 0.76 -9.02 16 26 F -0.15 -8.46 12.91 44.97 0.58 -7.88 16 27 F -0.22 -10.95 15.67 44.97 0.70 -10.24 16 28 C 0.11 2.15 6.62 86.73 0.57 2.73 16 29 H 0.04 0.71 8.10 -2.39 -0.02 0.69 16 30 H 0.04 0.71 8.10 -2.39 -0.02 0.69 16 31 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.12 0.69 7.85 -2.39 -0.02 0.67 16 33 H 0.12 0.71 8.14 -2.39 -0.02 0.70 16 34 H 0.11 0.71 7.48 -2.39 -0.02 0.69 16 35 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 38 H 0.41 8.21 8.36 -92.71 -0.78 7.43 16 39 H 0.41 13.30 8.55 -92.71 -0.79 12.51 16 40 H 0.27 13.98 8.31 -92.70 -0.77 13.21 16 41 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.08 1.48 7.71 -2.39 -0.02 1.47 16 Total: -1.00 -72.12 359.16 1.77 -70.35 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: -0.49 Total: 22.96 kcal Atomic # 6 Polarization: 44.98 SS G_CDS: 5.44 Total: 50.42 kcal Atomic # 7 Polarization: -105.69 SS G_CDS: -7.15 Total: -112.84 kcal Atomic # 8 Polarization: -45.83 SS G_CDS: -0.11 Total: -45.94 kcal Atomic # 9 Polarization: -29.19 SS G_CDS: 2.05 Total: -27.15 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 2.03 Total: 42.19 kcal Total: -72.12 1.77 -70.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932912899.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.600 kcal (2) G-P(sol) polarization free energy of solvation -72.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds