Wall clock time and date at job start Tue Mar 31 2020 20:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21276 * 120.00270 * 2 1 4 4 N 1.34785 * 119.99897 * 179.97438 * 2 1 3 5 5 C 1.46961 * 120.59375 * 359.97438 * 4 2 1 6 6 C 1.52932 * 108.69323 * 235.11983 * 5 4 2 7 7 N 1.46969 * 108.87110 * 310.79422 * 6 5 4 8 8 C 1.34775 * 120.59285 * 235.21083 * 7 6 5 9 9 O 1.21586 * 120.00105 * 174.49190 * 8 7 6 10 10 N 1.34778 * 119.99995 * 354.49094 * 8 7 6 11 11 C 1.46495 * 120.00011 * 185.04587 * 10 8 7 12 12 H 1.08998 * 109.46923 * 324.99778 * 11 10 8 13 13 C 1.50704 * 109.46924 * 204.99745 * 11 10 8 14 14 H 1.07997 * 120.00166 * 359.97438 * 13 11 10 15 15 C 1.37880 * 119.99779 * 179.97438 * 13 11 10 16 16 N 1.31518 * 120.00106 * 0.02562 * 15 13 11 17 17 Si 1.86801 * 119.99953 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.46941 * 89.99893 * 17 15 13 19 19 H 1.48491 * 109.47048 * 210.00030 * 17 15 13 20 20 H 1.48505 * 109.46981 * 330.00207 * 17 15 13 21 21 C 1.53001 * 109.47287 * 84.99665 * 11 10 8 22 22 F 1.39904 * 109.47137 * 59.99982 * 21 11 10 23 23 F 1.39897 * 109.46891 * 179.97438 * 21 11 10 24 24 F 1.39892 * 109.47145 * 299.99991 * 21 11 10 25 25 C 1.46966 * 118.80955 * 54.92993 * 7 6 5 26 26 H 1.09001 * 109.60758 * 185.11154 * 25 7 6 27 27 C 1.53001 * 109.61091 * 64.77492 * 25 7 6 28 28 C 1.46958 * 120.59214 * 180.02562 * 4 2 1 29 29 H 1.09002 * 109.47276 * 240.00473 * 1 2 3 30 30 H 1.08998 * 109.46909 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.46926 * 120.00546 * 1 2 3 32 32 H 1.09008 * 109.61090 * 354.99090 * 5 4 2 33 33 H 1.08997 * 109.61122 * 115.50160 * 5 4 2 34 34 H 1.08994 * 109.52657 * 190.95350 * 6 5 4 35 35 H 1.09007 * 109.45663 * 70.58736 * 6 5 4 36 36 H 0.97007 * 119.99711 * 5.03952 * 10 8 7 37 37 H 0.96995 * 119.99737 * 180.02562 * 16 15 13 38 38 H 1.08997 * 109.47035 * 59.99337 * 27 25 7 39 39 H 1.08994 * 109.46788 * 179.97438 * 27 25 7 40 40 H 1.09006 * 109.46902 * 299.99666 * 27 25 7 41 41 H 1.09000 * 109.61042 * 5.01005 * 28 4 2 42 42 H 1.08997 * 109.61145 * 244.49542 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 1.4592 -2.4475 0.0017 6 6 1.9407 -3.2805 1.1904 7 7 3.4103 -3.2957 1.1961 8 6 4.0842 -4.4629 1.1965 9 8 5.2962 -4.4652 1.1001 10 7 3.4145 -5.6276 1.3038 11 6 4.1516 -6.8887 1.4156 12 1 5.0601 -6.8329 0.8159 13 6 3.2896 -8.0202 0.9176 14 1 2.2924 -7.8199 0.5545 15 6 3.7741 -9.3110 0.9254 16 7 4.9884 -9.5549 1.3680 17 14 2.7060 -10.7134 0.3075 18 1 2.9306 -10.9022 -1.1482 19 1 3.0615 -11.9614 1.0292 20 1 1.2768 -10.3911 0.5501 21 6 4.5212 -7.1354 2.8796 22 9 3.3551 -7.2070 3.6493 23 9 5.2245 -8.3400 2.9864 24 9 5.3213 -6.0851 3.3419 25 6 4.1319 -2.0154 1.1949 26 1 5.2028 -2.1991 1.1081 27 6 3.8439 -1.2625 2.4954 28 6 3.6504 -1.1825 0.0011 29 1 -0.3634 -0.5138 0.8900 30 1 -0.3633 1.0277 -0.0005 31 1 -0.3633 -0.5139 -0.8899 32 1 0.3885 -2.2639 0.0916 33 1 1.6644 -2.9839 -0.9248 34 1 1.5646 -4.2993 1.0976 35 1 1.5759 -2.8362 2.1166 36 1 2.4444 -5.6308 1.3071 37 1 5.3293 -10.4629 1.3731 38 1 4.1731 -1.8630 3.3434 39 1 4.3804 -0.3138 2.4923 40 1 2.7733 -1.0747 2.5770 41 1 4.0267 -0.1635 0.0907 42 1 4.0120 -1.6286 -0.9254 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932913128.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:57 Heat of formation + Delta-G solvation = -182.366001 kcal Electronic energy + Delta-G solvation = -31621.076280 eV Core-core repulsion = 26801.713249 eV Total energy + Delta-G solvation = -4819.363031 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.36495 -46.02120 -45.62945 -40.73828 -39.36030 -37.20429 -34.87285 -34.11063 -33.20598 -32.13775 -30.14605 -29.06077 -27.83213 -26.12065 -24.60426 -23.78392 -22.31908 -20.93245 -20.15025 -19.02588 -18.01107 -17.06921 -16.93390 -16.67146 -16.60724 -16.35437 -15.90479 -15.80539 -15.51718 -14.85186 -14.79476 -14.25990 -14.05214 -13.89567 -13.43785 -13.07651 -13.05771 -12.91819 -12.87009 -12.55709 -12.43641 -12.41520 -12.31076 -12.29062 -12.02634 -11.96938 -11.84677 -11.57715 -11.42385 -11.21158 -11.02612 -10.87276 -10.85076 -10.42297 -10.01554 -9.69886 -9.57591 -9.25259 -8.76065 -8.46440 -8.12218 -6.26876 -4.51108 2.40689 2.58745 3.04766 3.15498 3.22383 3.24915 3.63909 4.10983 4.21418 4.36090 4.55779 4.62012 4.70898 4.86567 4.90365 4.90785 4.93721 5.03712 5.18111 5.22679 5.37747 5.44470 5.54691 5.60563 5.69127 5.71779 5.80283 5.86028 5.91123 6.14038 6.18257 6.27207 6.59442 6.82966 7.12027 7.16400 7.30341 7.54581 7.60843 7.93881 8.43620 8.52559 9.06896 9.19010 10.64773 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.018624 B = 0.003548 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.109287 B = 7890.960522 C = 8714.763445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.512 3.488 3 O -0.549 6.549 4 N -0.609 5.609 5 C 0.092 3.908 6 C 0.096 3.904 7 N -0.631 5.631 8 C 0.705 3.295 9 O -0.579 6.579 10 N -0.726 5.726 11 C 0.261 3.739 12 H 0.087 0.913 13 C -0.552 4.552 14 H 0.076 0.924 15 C 0.065 3.935 16 N -0.839 5.839 17 Si 0.915 3.085 18 H -0.276 1.276 19 H -0.282 1.282 20 H -0.271 1.271 21 C 0.416 3.584 22 F -0.210 7.210 23 F -0.137 7.137 24 F -0.218 7.218 25 C 0.143 3.857 26 H 0.114 0.886 27 C -0.155 4.155 28 C 0.102 3.898 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.072 0.928 36 H 0.392 0.608 37 H 0.268 0.732 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.053 0.947 41 H 0.102 0.898 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.859 12.568 -1.584 16.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.302 3.698 3 O -0.427 6.427 4 N -0.343 5.343 5 C -0.032 4.032 6 C -0.029 4.029 7 N -0.370 5.370 8 C 0.407 3.593 9 O -0.456 6.456 10 N -0.380 5.380 11 C 0.155 3.845 12 H 0.104 0.896 13 C -0.589 4.589 14 H 0.094 0.906 15 C -0.144 4.144 16 N -0.472 5.472 17 Si 0.742 3.258 18 H -0.202 1.202 19 H -0.208 1.208 20 H -0.196 1.196 21 C 0.359 3.641 22 F -0.192 7.192 23 F -0.118 7.118 24 F -0.200 7.200 25 C 0.038 3.962 26 H 0.131 0.869 27 C -0.214 4.214 28 C -0.021 4.021 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.116 0.884 33 H 0.097 0.903 34 H 0.112 0.888 35 H 0.090 0.910 36 H 0.228 0.772 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.120 0.880 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.449 12.912 -1.570 15.510 hybrid contribution -1.034 -1.002 0.120 1.445 sum -9.483 11.910 -1.450 15.293 Atomic orbital electron populations 1.21946 0.91851 1.05403 1.04202 1.20817 0.90616 0.82968 0.75442 1.90707 1.70764 1.30986 1.50213 1.48060 1.07067 1.05897 1.73311 1.22138 0.97064 0.84329 0.99653 1.21864 0.81610 1.01171 0.98253 1.47258 1.05227 1.04783 1.79719 1.15955 0.85415 0.80297 0.77655 1.90906 1.11765 1.85745 1.57181 1.45434 1.09699 1.05211 1.77660 1.19625 0.96602 0.81109 0.87202 0.89588 1.20843 1.01496 0.90330 1.46226 0.90573 1.25076 0.95698 0.99243 0.94344 1.70401 1.15384 1.21645 1.39734 0.86214 0.80197 0.80584 0.78830 1.20200 1.20796 1.19551 1.23197 0.73764 0.74457 0.92652 1.92983 1.50817 1.96331 1.79090 1.93404 1.78859 1.43316 1.96217 1.93064 1.75599 1.59945 1.91402 1.21350 0.98681 0.81902 0.94293 0.86853 1.22051 1.01802 1.00147 0.97365 1.22076 0.79380 1.02102 0.98556 0.89280 0.89074 0.89335 0.88441 0.90316 0.88788 0.91010 0.77151 0.92080 0.91980 0.91530 0.92813 0.87979 0.90834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.08 8.66 36.00 0.31 -0.77 16 2 C 0.51 5.42 7.81 -10.98 -0.09 5.34 16 3 O -0.55 -8.05 16.49 5.56 0.09 -7.96 16 4 N -0.61 -6.12 2.59 -172.79 -0.45 -6.57 16 5 C 0.09 0.73 6.49 -3.83 -0.02 0.71 16 6 C 0.10 0.97 6.11 -3.82 -0.02 0.95 16 7 N -0.63 -9.01 2.67 -170.92 -0.46 -9.47 16 8 C 0.71 13.59 7.74 -86.92 -0.67 12.92 16 9 O -0.58 -13.52 14.57 5.29 0.08 -13.44 16 10 N -0.73 -14.23 4.90 -59.81 -0.29 -14.52 16 11 C 0.26 6.31 2.22 -69.08 -0.15 6.15 16 12 H 0.09 2.36 7.51 -51.93 -0.39 1.97 16 13 C -0.55 -13.57 8.46 -34.44 -0.29 -13.87 16 14 H 0.08 1.75 7.74 -52.49 -0.41 1.34 16 15 C 0.07 1.65 5.20 -17.82 -0.09 1.56 16 16 N -0.84 -22.56 9.50 55.43 0.53 -22.03 16 17 Si 0.92 19.50 29.54 -169.99 -5.02 14.48 16 18 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 19 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 20 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 21 C 0.42 10.48 2.81 37.16 0.10 10.59 16 22 F -0.21 -5.07 16.94 2.25 0.04 -5.03 16 23 F -0.14 -3.74 12.91 2.25 0.03 -3.71 16 24 F -0.22 -5.51 15.88 2.25 0.04 -5.47 16 25 C 0.14 1.87 3.24 -67.51 -0.22 1.65 16 26 H 0.11 1.70 6.99 -51.93 -0.36 1.34 16 27 C -0.16 -1.84 9.14 37.16 0.34 -1.50 16 28 C 0.10 1.18 5.96 -3.62 -0.02 1.16 16 29 H 0.09 0.40 7.72 -51.93 -0.40 0.00 16 30 H 0.09 0.57 8.12 -51.93 -0.42 0.15 16 31 H 0.09 0.40 7.91 -51.93 -0.41 -0.02 16 32 H 0.10 0.46 5.91 -51.92 -0.31 0.16 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.09 0.90 5.62 -51.93 -0.29 0.61 16 35 H 0.07 0.66 7.42 -51.92 -0.39 0.28 16 36 H 0.39 6.50 6.02 -40.82 -0.25 6.26 16 37 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.05 0.61 7.03 -51.93 -0.37 0.24 16 41 H 0.10 1.21 6.97 -51.93 -0.36 0.85 16 42 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 346.99 15.07 5.23 5.23 Total: -1.00 -32.66 346.99 -6.19 -38.85 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -5.17 Total: 4.76 kcal Atomic # 6 Polarization: 25.71 SS G_CDS: -0.83 Total: 24.88 kcal Atomic # 7 Polarization: -51.92 SS G_CDS: -0.67 Total: -52.59 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: 0.17 Total: -21.40 kcal Atomic # 9 Polarization: -14.32 SS G_CDS: 0.10 Total: -14.22 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.02 Total: 14.48 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.66 -6.19 -38.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932913128.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.513 kcal (2) G-P(sol) polarization free energy of solvation -32.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds