Wall clock time and date at job start Tue Mar 31 2020 20:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21276 * 120.00270 * 2 1 4 4 N 1.34785 * 119.99897 * 179.97438 * 2 1 3 5 5 C 1.46961 * 120.59375 * 359.97438 * 4 2 1 6 6 C 1.52932 * 108.69323 * 235.11983 * 5 4 2 7 7 N 1.46969 * 108.87110 * 310.79422 * 6 5 4 8 8 C 1.34775 * 120.59285 * 235.21083 * 7 6 5 9 9 O 1.21586 * 120.00105 * 174.49190 * 8 7 6 10 10 N 1.34778 * 119.99995 * 354.49094 * 8 7 6 11 11 C 1.46495 * 120.00011 * 185.04587 * 10 8 7 12 12 H 1.08998 * 109.46923 * 324.99778 * 11 10 8 13 13 C 1.50704 * 109.46924 * 204.99745 * 11 10 8 14 14 H 1.07997 * 120.00166 * 359.97438 * 13 11 10 15 15 C 1.37880 * 119.99779 * 179.97438 * 13 11 10 16 16 N 1.31518 * 120.00106 * 0.02562 * 15 13 11 17 17 Si 1.86801 * 119.99953 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.46941 * 89.99893 * 17 15 13 19 19 H 1.48491 * 109.47048 * 210.00030 * 17 15 13 20 20 H 1.48505 * 109.46981 * 330.00207 * 17 15 13 21 21 C 1.53001 * 109.47287 * 84.99665 * 11 10 8 22 22 F 1.39904 * 109.47137 * 59.99982 * 21 11 10 23 23 F 1.39897 * 109.46891 * 179.97438 * 21 11 10 24 24 F 1.39892 * 109.47145 * 299.99991 * 21 11 10 25 25 C 1.46966 * 118.80955 * 54.92993 * 7 6 5 26 26 H 1.09001 * 109.60758 * 185.11154 * 25 7 6 27 27 C 1.53001 * 109.61091 * 64.77492 * 25 7 6 28 28 C 1.46958 * 120.59214 * 180.02562 * 4 2 1 29 29 H 1.09002 * 109.47276 * 240.00473 * 1 2 3 30 30 H 1.08998 * 109.46909 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.46926 * 120.00546 * 1 2 3 32 32 H 1.09008 * 109.61090 * 354.99090 * 5 4 2 33 33 H 1.08997 * 109.61122 * 115.50160 * 5 4 2 34 34 H 1.08994 * 109.52657 * 190.95350 * 6 5 4 35 35 H 1.09007 * 109.45663 * 70.58736 * 6 5 4 36 36 H 0.97007 * 119.99711 * 5.03952 * 10 8 7 37 37 H 0.96995 * 119.99737 * 180.02562 * 16 15 13 38 38 H 1.08997 * 109.47035 * 59.99337 * 27 25 7 39 39 H 1.08994 * 109.46788 * 179.97438 * 27 25 7 40 40 H 1.09006 * 109.46902 * 299.99666 * 27 25 7 41 41 H 1.09000 * 109.61042 * 5.01005 * 28 4 2 42 42 H 1.08997 * 109.61145 * 244.49542 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 1.4592 -2.4475 0.0017 6 6 1.9407 -3.2805 1.1904 7 7 3.4103 -3.2957 1.1961 8 6 4.0842 -4.4629 1.1965 9 8 5.2962 -4.4652 1.1001 10 7 3.4145 -5.6276 1.3038 11 6 4.1516 -6.8887 1.4156 12 1 5.0601 -6.8329 0.8159 13 6 3.2896 -8.0202 0.9176 14 1 2.2924 -7.8199 0.5545 15 6 3.7741 -9.3110 0.9254 16 7 4.9884 -9.5549 1.3680 17 14 2.7060 -10.7134 0.3075 18 1 2.9306 -10.9022 -1.1482 19 1 3.0615 -11.9614 1.0292 20 1 1.2768 -10.3911 0.5501 21 6 4.5212 -7.1354 2.8796 22 9 3.3551 -7.2070 3.6493 23 9 5.2245 -8.3400 2.9864 24 9 5.3213 -6.0851 3.3419 25 6 4.1319 -2.0154 1.1949 26 1 5.2028 -2.1991 1.1081 27 6 3.8439 -1.2625 2.4954 28 6 3.6504 -1.1825 0.0011 29 1 -0.3634 -0.5138 0.8900 30 1 -0.3633 1.0277 -0.0005 31 1 -0.3633 -0.5139 -0.8899 32 1 0.3885 -2.2639 0.0916 33 1 1.6644 -2.9839 -0.9248 34 1 1.5646 -4.2993 1.0976 35 1 1.5759 -2.8362 2.1166 36 1 2.4444 -5.6308 1.3071 37 1 5.3293 -10.4629 1.3731 38 1 4.1731 -1.8630 3.3434 39 1 4.3804 -0.3138 2.4923 40 1 2.7733 -1.0747 2.5770 41 1 4.0267 -0.1635 0.0907 42 1 4.0120 -1.6286 -0.9254 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932913128.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:56 Heat of formation + Delta-G solvation = -204.342911 kcal Electronic energy + Delta-G solvation = -31622.029270 eV Core-core repulsion = 26801.713249 eV Total energy + Delta-G solvation = -4820.316021 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.40018 -48.03741 -47.70984 -41.81878 -40.55012 -38.36618 -36.55645 -35.22074 -34.69466 -33.50854 -30.77501 -30.43110 -29.25571 -27.02118 -26.56752 -24.65876 -23.93455 -22.37213 -21.26503 -20.49751 -19.05828 -18.89087 -18.74565 -18.61016 -17.80899 -17.64948 -17.12614 -16.82681 -16.76233 -16.52305 -16.16581 -15.49262 -15.23038 -14.98747 -14.92977 -14.73589 -14.53989 -14.44819 -14.28090 -14.21567 -14.03011 -13.96848 -13.79370 -13.47802 -13.25342 -13.02934 -12.99835 -12.81470 -12.72546 -12.59266 -12.50883 -12.35693 -12.15837 -12.04009 -11.55807 -11.17986 -10.86787 -10.65803 -10.35705 -10.03058 -9.29594 -8.18501 -6.49426 1.43670 1.50559 1.51661 1.62354 1.62914 2.05161 2.12091 2.38795 2.56756 2.92718 2.97808 3.56410 3.75680 3.78450 3.83532 3.89397 4.06603 4.10199 4.16989 4.27200 4.33884 4.46516 4.53376 4.62877 4.64013 4.71929 4.73532 4.82770 4.90869 4.94982 5.13358 5.17310 5.38884 5.44057 5.48332 5.60920 5.67805 5.96814 6.41332 6.55826 7.03905 7.15222 7.21189 7.60487 8.74333 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.018624 B = 0.003548 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.109287 B = 7890.960522 C = 8714.763445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.507 3.493 3 O -0.597 6.597 4 N -0.609 5.609 5 C 0.096 3.904 6 C 0.086 3.914 7 N -0.621 5.621 8 C 0.701 3.299 9 O -0.628 6.628 10 N -0.717 5.717 11 C 0.270 3.730 12 H 0.045 0.955 13 C -0.557 4.557 14 H 0.096 0.904 15 C 0.014 3.986 16 N -0.876 5.876 17 Si 0.984 3.016 18 H -0.272 1.272 19 H -0.288 1.288 20 H -0.254 1.254 21 C 0.412 3.588 22 F -0.202 7.202 23 F -0.151 7.151 24 F -0.222 7.222 25 C 0.141 3.859 26 H 0.086 0.914 27 C -0.144 4.144 28 C 0.111 3.889 29 H 0.115 0.885 30 H 0.089 0.911 31 H 0.113 0.887 32 H 0.143 0.857 33 H 0.079 0.921 34 H 0.103 0.897 35 H 0.090 0.910 36 H 0.409 0.591 37 H 0.268 0.732 38 H 0.046 0.954 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.097 0.903 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.597 12.841 -2.069 18.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.299 3.701 3 O -0.478 6.478 4 N -0.342 5.342 5 C -0.027 4.027 6 C -0.037 4.037 7 N -0.359 5.359 8 C 0.402 3.598 9 O -0.509 6.509 10 N -0.373 5.373 11 C 0.162 3.838 12 H 0.063 0.937 13 C -0.594 4.594 14 H 0.114 0.886 15 C -0.191 4.191 16 N -0.510 5.510 17 Si 0.807 3.193 18 H -0.197 1.197 19 H -0.214 1.214 20 H -0.178 1.178 21 C 0.356 3.644 22 F -0.184 7.184 23 F -0.133 7.133 24 F -0.204 7.204 25 C 0.037 3.963 26 H 0.104 0.896 27 C -0.203 4.203 28 C -0.014 4.014 29 H 0.133 0.867 30 H 0.107 0.893 31 H 0.132 0.868 32 H 0.161 0.839 33 H 0.097 0.903 34 H 0.121 0.879 35 H 0.108 0.892 36 H 0.248 0.752 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.094 0.906 40 H 0.084 0.916 41 H 0.115 0.885 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.277 13.224 -2.059 18.161 hybrid contribution 0.152 -1.007 0.292 1.059 sum -12.124 12.217 -1.767 17.303 Atomic orbital electron populations 1.21994 0.87859 1.06231 1.06567 1.21683 0.92410 0.82031 0.73977 1.90692 1.72082 1.32677 1.52387 1.48155 1.06219 1.06921 1.72863 1.22314 0.99159 0.82753 0.98448 1.22259 0.78494 1.02572 1.00377 1.47269 1.07236 1.03343 1.78073 1.16130 0.84946 0.81304 0.77392 1.90872 1.14172 1.86620 1.59210 1.45115 1.10268 1.04062 1.77874 1.19183 0.95616 0.83184 0.85849 0.93738 1.21208 1.02148 0.90348 1.45721 0.88638 1.26010 0.96773 1.01963 0.94331 1.70543 1.17252 1.22029 1.41206 0.85154 0.79101 0.76905 0.78135 1.19693 1.21367 1.17815 1.23398 0.73773 0.73887 0.93378 1.92982 1.50204 1.96280 1.78940 1.93375 1.79281 1.44256 1.96342 1.93054 1.75815 1.60002 1.91495 1.21384 0.97368 0.81689 0.95892 0.89585 1.21948 1.02590 0.99953 0.95763 1.21823 0.81052 1.01171 0.97324 0.86651 0.89253 0.86840 0.83923 0.90297 0.87879 0.89174 0.75180 0.92257 0.93481 0.90629 0.91587 0.88504 0.91419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.34 8.66 71.23 0.62 -0.73 16 2 C 0.51 9.41 7.81 87.65 0.68 10.10 16 3 O -0.60 -16.89 16.49 -3.02 -0.05 -16.94 16 4 N -0.61 -10.71 2.59 -818.97 -2.12 -12.83 16 5 C 0.10 1.15 6.49 86.27 0.56 1.71 16 6 C 0.09 1.47 6.11 86.27 0.53 1.99 16 7 N -0.62 -17.25 2.67 -812.94 -2.17 -19.42 16 8 C 0.70 27.28 7.74 179.05 1.39 28.66 16 9 O -0.63 -30.63 14.57 -3.99 -0.06 -30.69 16 10 N -0.72 -27.83 4.90 -461.42 -2.26 -30.09 16 11 C 0.27 13.23 2.22 44.25 0.10 13.33 16 12 H 0.04 2.57 7.51 -2.39 -0.02 2.55 16 13 C -0.56 -27.00 8.46 25.60 0.22 -26.78 16 14 H 0.10 4.15 7.74 -2.91 -0.02 4.13 16 15 C 0.01 0.72 5.20 84.65 0.44 1.16 16 16 N -0.88 -47.90 9.50 21.45 0.20 -47.70 16 17 Si 0.98 39.05 29.54 68.60 2.03 41.08 16 18 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 19 H -0.29 -11.60 7.11 99.48 0.71 -10.89 16 20 H -0.25 -9.36 7.11 99.48 0.71 -8.65 16 21 C 0.41 21.10 2.81 71.98 0.20 21.30 16 22 F -0.20 -9.63 16.94 44.97 0.76 -8.87 16 23 F -0.15 -8.48 12.91 44.97 0.58 -7.90 16 24 F -0.22 -11.48 15.88 44.97 0.71 -10.76 16 25 C 0.14 3.71 3.24 45.01 0.15 3.85 16 26 H 0.09 2.75 6.99 -2.39 -0.02 2.73 16 27 C -0.14 -3.31 9.14 71.98 0.66 -2.65 16 28 C 0.11 2.50 5.96 86.40 0.52 3.01 16 29 H 0.12 0.37 7.72 -2.39 -0.02 0.35 16 30 H 0.09 0.82 8.12 -2.39 -0.02 0.80 16 31 H 0.11 0.40 7.91 -2.39 -0.02 0.38 16 32 H 0.14 0.49 5.91 -2.38 -0.01 0.47 16 33 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.10 1.60 5.62 -2.39 -0.01 1.59 16 35 H 0.09 1.29 7.42 -2.38 -0.02 1.27 16 36 H 0.41 12.77 6.02 -92.70 -0.56 12.21 16 37 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 38 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.07 1.35 7.03 -2.38 -0.02 1.33 16 41 H 0.10 2.32 6.97 -2.39 -0.02 2.30 16 42 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -74.09 346.99 4.20 -69.89 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: 0.52 Total: 19.27 kcal Atomic # 6 Polarization: 48.90 SS G_CDS: 6.05 Total: 54.95 kcal Atomic # 7 Polarization: -103.68 SS G_CDS: -6.35 Total: -110.03 kcal Atomic # 8 Polarization: -47.52 SS G_CDS: -0.11 Total: -47.62 kcal Atomic # 9 Polarization: -29.59 SS G_CDS: 2.06 Total: -27.53 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 2.03 Total: 41.08 kcal Total: -74.09 4.20 -69.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932913128.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.452 kcal (2) G-P(sol) polarization free energy of solvation -74.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds