Wall clock time and date at job start Tue Mar 31 2020 20:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21276 * 119.99812 * 2 1 4 4 N 1.34781 * 119.99872 * 179.97438 * 2 1 3 5 5 C 1.46962 * 120.59468 * 4.79109 * 4 2 1 6 6 C 1.53364 * 108.63585 * 235.22806 * 5 4 2 7 7 N 1.46965 * 108.63477 * 310.57471 * 6 5 4 8 8 C 1.34782 * 120.59752 * 235.25249 * 7 6 5 9 9 O 1.21589 * 119.99856 * 185.82648 * 8 7 6 10 10 N 1.34771 * 119.99690 * 5.82246 * 8 7 6 11 11 C 1.46500 * 120.00037 * 185.04989 * 10 8 7 12 12 H 1.09004 * 109.47157 * 34.99659 * 11 10 8 13 13 C 1.50697 * 109.47542 * 155.00066 * 11 10 8 14 14 H 1.07997 * 119.99904 * 359.97438 * 13 11 10 15 15 C 1.37874 * 120.00149 * 180.02562 * 13 11 10 16 16 N 1.31511 * 120.00124 * 359.97438 * 15 13 11 17 17 Si 1.86806 * 120.00061 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.47088 * 59.99574 * 17 15 13 19 19 H 1.48500 * 109.47002 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46822 * 300.00054 * 17 15 13 21 21 C 1.52995 * 109.47110 * 275.00039 * 11 10 8 22 22 F 1.39901 * 109.47173 * 59.99712 * 21 11 10 23 23 F 1.39898 * 109.47289 * 179.97438 * 21 11 10 24 24 F 1.39901 * 109.47139 * 299.99928 * 21 11 10 25 25 C 1.46962 * 118.81061 * 55.22620 * 7 6 5 26 26 H 1.09006 * 109.60892 * 64.69027 * 25 7 6 27 27 C 1.53004 * 109.61131 * 185.02900 * 25 7 6 28 28 C 1.46957 * 120.59063 * 184.79038 * 4 2 1 29 29 H 1.08998 * 109.47776 * 264.66365 * 1 2 3 30 30 H 1.08999 * 109.47296 * 24.67202 * 1 2 3 31 31 H 1.09004 * 109.47085 * 144.66500 * 1 2 3 32 32 H 1.09002 * 109.60547 * 115.47859 * 5 4 2 33 33 H 1.08998 * 109.61112 * 354.97219 * 5 4 2 34 34 H 1.09002 * 109.60856 * 190.83682 * 6 5 4 35 35 H 1.08996 * 109.75726 * 70.40270 * 6 5 4 36 36 H 0.97002 * 120.00386 * 5.04705 * 10 8 7 37 37 H 0.97003 * 120.00369 * 180.02562 * 16 15 13 38 38 H 1.08997 * 109.46968 * 54.60920 * 27 25 7 39 39 H 1.09002 * 109.47086 * 174.60759 * 27 25 7 40 40 H 1.09000 * 109.47279 * 294.60290 * 27 25 7 41 41 H 1.09003 * 109.61430 * 5.03392 * 28 4 2 42 42 H 1.08998 * 109.61190 * 244.51675 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 1.4631 -2.4454 -0.1046 6 6 1.8581 -3.3285 1.0854 7 7 3.3239 -3.3460 1.1911 8 6 3.9979 -4.5132 1.1911 9 8 5.1981 -4.5221 1.3852 10 7 3.3413 -5.6704 0.9761 11 6 4.0518 -6.9469 1.0854 12 1 4.7990 -6.8803 1.8762 13 6 3.0698 -8.0420 1.4132 14 1 2.0213 -7.8102 1.5290 15 6 3.5099 -9.3396 1.5664 16 7 4.7867 -9.6218 1.4259 17 14 2.2927 -10.6969 1.9735 18 1 1.2745 -10.7881 0.8963 19 1 3.0129 -11.9908 2.0841 20 1 1.6229 -10.3907 3.2630 21 6 4.7420 -7.2618 -0.2432 22 9 5.6536 -6.2453 -0.5476 23 9 5.4209 -8.4806 -0.1386 24 9 3.7829 -7.3473 -1.2581 25 6 4.0416 -2.0679 1.2962 26 1 3.7714 -1.5722 2.2286 27 6 5.5501 -2.3223 1.2684 28 6 3.6465 -1.1846 0.1062 29 1 -0.3634 -0.0956 1.0231 30 1 -0.3634 0.9338 -0.4290 31 1 -0.3633 -0.8384 -0.5944 32 1 1.7356 -2.9424 -1.0356 33 1 0.3885 -2.2641 -0.0848 34 1 1.4908 -4.3424 0.9263 35 1 1.4301 -2.9241 2.0025 36 1 2.3983 -5.6581 0.7490 37 1 5.0963 -10.5347 1.5333 38 1 5.8053 -2.8968 0.3780 39 1 6.0790 -1.3693 1.2498 40 1 5.8407 -2.8817 2.1575 41 1 4.0139 -0.1708 0.2653 42 1 4.0746 -1.5920 -0.8097 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932913138.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:07 Heat of formation + Delta-G solvation = -165.405514 kcal Electronic energy + Delta-G solvation = -31771.304303 eV Core-core repulsion = 26952.676734 eV Total energy + Delta-G solvation = -4818.627569 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.33144 -45.98134 -45.60499 -40.74184 -39.46204 -37.05029 -35.13269 -34.01460 -33.31430 -32.08499 -30.19370 -28.94003 -27.60697 -25.99011 -24.59225 -23.42938 -22.57418 -21.03786 -20.00734 -19.19686 -17.94752 -17.07837 -16.89003 -16.68529 -16.59205 -16.30000 -16.03833 -15.78264 -15.57278 -14.88568 -14.82374 -14.16396 -14.03769 -13.80065 -13.37223 -13.14916 -13.07494 -12.89267 -12.64279 -12.49884 -12.37991 -12.33397 -12.29296 -12.23355 -12.00361 -11.82991 -11.69948 -11.55952 -11.45352 -11.17556 -11.13499 -10.89793 -10.78676 -10.39782 -10.03759 -9.70992 -9.31690 -8.79914 -8.74612 -8.37975 -8.11589 -6.26652 -4.51181 2.39423 2.59879 3.03741 3.16425 3.22071 3.23493 3.66028 4.10910 4.21856 4.35802 4.56965 4.60490 4.71785 4.81877 4.90800 4.96533 5.01194 5.04963 5.18521 5.22526 5.37294 5.51156 5.59207 5.61979 5.76612 5.82763 5.87780 5.93881 6.19070 6.21250 6.36717 6.48813 6.78069 6.91192 7.13963 7.20121 7.29752 7.54424 7.60926 7.92970 8.43976 8.53468 9.09251 9.20142 10.64737 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.018442 B = 0.003627 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.897919 B = 7719.036901 C = 8428.252074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.512 3.488 3 O -0.550 6.550 4 N -0.612 5.612 5 C 0.088 3.912 6 C 0.098 3.902 7 N -0.634 5.634 8 C 0.702 3.298 9 O -0.569 6.569 10 N -0.727 5.727 11 C 0.263 3.737 12 H 0.084 0.916 13 C -0.553 4.553 14 H 0.075 0.925 15 C 0.066 3.934 16 N -0.839 5.839 17 Si 0.914 3.086 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.273 1.273 21 C 0.416 3.584 22 F -0.215 7.215 23 F -0.138 7.138 24 F -0.211 7.211 25 C 0.153 3.847 26 H 0.070 0.930 27 C -0.134 4.134 28 C 0.099 3.901 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.073 0.927 36 H 0.391 0.609 37 H 0.269 0.731 38 H 0.073 0.927 39 H 0.040 0.960 40 H 0.085 0.915 41 H 0.101 0.899 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.003 12.164 -1.646 15.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.302 3.698 3 O -0.428 6.428 4 N -0.346 5.346 5 C -0.036 4.036 6 C -0.027 4.027 7 N -0.374 5.374 8 C 0.404 3.596 9 O -0.446 6.446 10 N -0.382 5.382 11 C 0.157 3.843 12 H 0.101 0.899 13 C -0.590 4.590 14 H 0.093 0.907 15 C -0.143 4.143 16 N -0.471 5.471 17 Si 0.741 3.259 18 H -0.199 1.199 19 H -0.209 1.209 20 H -0.198 1.198 21 C 0.360 3.640 22 F -0.197 7.197 23 F -0.119 7.119 24 F -0.193 7.193 25 C 0.048 3.952 26 H 0.088 0.912 27 C -0.192 4.192 28 C -0.025 4.025 29 H 0.113 0.887 30 H 0.110 0.890 31 H 0.103 0.897 32 H 0.097 0.903 33 H 0.118 0.882 34 H 0.113 0.887 35 H 0.091 0.909 36 H 0.227 0.773 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.058 0.942 40 H 0.104 0.896 41 H 0.119 0.881 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.596 12.508 -1.502 14.710 hybrid contribution -1.081 -0.962 -0.298 1.477 sum -8.677 11.546 -1.800 14.555 Atomic orbital electron populations 1.21973 0.91797 1.05007 1.04745 1.20838 0.90657 0.82965 0.75375 1.90708 1.70766 1.31029 1.50260 1.48114 1.07490 1.06057 1.72914 1.22303 0.97599 0.84182 0.99521 1.21967 0.81639 1.00966 0.98133 1.47277 1.05638 1.05048 1.79420 1.16039 0.85279 0.80154 0.78125 1.90973 1.12245 1.85092 1.56243 1.45561 1.13460 1.04970 1.74202 1.19581 0.94573 0.80553 0.89573 0.89869 1.20809 0.94084 0.91261 1.52893 0.90669 1.25066 0.95943 0.99014 0.94288 1.70389 1.13441 1.20867 1.42452 0.86286 0.80456 0.80103 0.79061 1.19853 1.20870 1.19813 1.23148 0.77031 0.75027 0.88824 1.93079 1.69890 1.61984 1.94717 1.93399 1.80676 1.42477 1.95395 1.92979 1.65315 1.96311 1.64718 1.21394 0.94254 0.82570 0.96947 0.91248 1.22154 0.91180 0.99658 1.06198 1.22207 0.79381 1.01834 0.99039 0.88743 0.88993 0.89707 0.90321 0.88206 0.88695 0.90903 0.77329 0.92036 0.90849 0.94154 0.89589 0.88091 0.90853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.13 9.43 36.00 0.34 -0.79 16 2 C 0.51 5.64 7.80 -10.98 -0.09 5.55 16 3 O -0.55 -8.33 16.52 5.56 0.09 -8.24 16 4 N -0.61 -6.46 2.95 -172.50 -0.51 -6.96 16 5 C 0.09 0.73 6.44 -3.60 -0.02 0.70 16 6 C 0.10 0.98 6.59 -3.60 -0.02 0.96 16 7 N -0.63 -8.99 2.95 -170.63 -0.50 -9.50 16 8 C 0.70 13.15 7.74 -86.92 -0.67 12.48 16 9 O -0.57 -12.48 10.21 5.29 0.05 -12.43 16 10 N -0.73 -14.01 4.88 -59.81 -0.29 -14.31 16 11 C 0.26 6.28 2.20 -69.09 -0.15 6.13 16 12 H 0.08 2.24 7.65 -51.93 -0.40 1.84 16 13 C -0.55 -13.52 8.46 -34.44 -0.29 -13.81 16 14 H 0.08 1.71 7.74 -52.49 -0.41 1.31 16 15 C 0.07 1.66 5.20 -17.82 -0.09 1.57 16 16 N -0.84 -22.45 9.50 55.43 0.53 -21.92 16 17 Si 0.91 19.44 29.54 -169.99 -5.02 14.42 16 18 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 19 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 20 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 21 C 0.42 10.40 2.81 37.16 0.10 10.50 16 22 F -0.21 -5.36 15.47 2.25 0.03 -5.32 16 23 F -0.14 -3.76 12.91 2.25 0.03 -3.73 16 24 F -0.21 -5.07 16.94 2.25 0.04 -5.04 16 25 C 0.15 2.02 3.65 -67.48 -0.25 1.77 16 26 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 27 C -0.13 -1.99 7.59 37.16 0.28 -1.71 16 28 C 0.10 1.19 5.90 -3.60 -0.02 1.17 16 29 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.37 6.25 -51.93 -0.32 0.04 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.10 0.49 5.46 -51.93 -0.28 0.21 16 34 H 0.09 0.90 5.58 -51.93 -0.29 0.61 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.39 6.41 6.04 -40.82 -0.25 6.16 16 37 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 38 H 0.07 1.27 6.88 -51.93 -0.36 0.91 16 39 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.09 1.47 6.61 -51.93 -0.34 1.13 16 41 H 0.10 1.26 7.02 -51.93 -0.36 0.89 16 42 H 0.07 0.93 8.12 -51.93 -0.42 0.50 16 LS Contribution 341.50 15.07 5.15 5.15 Total: -1.00 -31.85 341.50 -6.39 -38.24 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -5.11 Total: 5.12 kcal Atomic # 6 Polarization: 25.41 SS G_CDS: -0.88 Total: 24.53 kcal Atomic # 7 Polarization: -51.91 SS G_CDS: -0.78 Total: -52.69 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: 0.15 Total: -20.67 kcal Atomic # 9 Polarization: -14.19 SS G_CDS: 0.10 Total: -14.09 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.02 Total: 14.42 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.85 -6.39 -38.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932913138.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.163 kcal (2) G-P(sol) polarization free energy of solvation -31.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds