Wall clock time and date at job start Tue Mar 31 2020 20:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21276 * 119.99812 * 2 1 4 4 N 1.34781 * 119.99872 * 179.97438 * 2 1 3 5 5 C 1.46962 * 120.59468 * 4.79109 * 4 2 1 6 6 C 1.53364 * 108.63585 * 235.22806 * 5 4 2 7 7 N 1.46965 * 108.63477 * 310.57471 * 6 5 4 8 8 C 1.34782 * 120.59752 * 235.25249 * 7 6 5 9 9 O 1.21589 * 119.99856 * 185.82648 * 8 7 6 10 10 N 1.34771 * 119.99690 * 5.82246 * 8 7 6 11 11 C 1.46500 * 120.00037 * 185.04989 * 10 8 7 12 12 H 1.09004 * 109.47157 * 34.99659 * 11 10 8 13 13 C 1.50697 * 109.47542 * 155.00066 * 11 10 8 14 14 H 1.07997 * 119.99904 * 359.97438 * 13 11 10 15 15 C 1.37874 * 120.00149 * 180.02562 * 13 11 10 16 16 N 1.31511 * 120.00124 * 359.97438 * 15 13 11 17 17 Si 1.86806 * 120.00061 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.47088 * 59.99574 * 17 15 13 19 19 H 1.48500 * 109.47002 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46822 * 300.00054 * 17 15 13 21 21 C 1.52995 * 109.47110 * 275.00039 * 11 10 8 22 22 F 1.39901 * 109.47173 * 59.99712 * 21 11 10 23 23 F 1.39898 * 109.47289 * 179.97438 * 21 11 10 24 24 F 1.39901 * 109.47139 * 299.99928 * 21 11 10 25 25 C 1.46962 * 118.81061 * 55.22620 * 7 6 5 26 26 H 1.09006 * 109.60892 * 64.69027 * 25 7 6 27 27 C 1.53004 * 109.61131 * 185.02900 * 25 7 6 28 28 C 1.46957 * 120.59063 * 184.79038 * 4 2 1 29 29 H 1.08998 * 109.47776 * 264.66365 * 1 2 3 30 30 H 1.08999 * 109.47296 * 24.67202 * 1 2 3 31 31 H 1.09004 * 109.47085 * 144.66500 * 1 2 3 32 32 H 1.09002 * 109.60547 * 115.47859 * 5 4 2 33 33 H 1.08998 * 109.61112 * 354.97219 * 5 4 2 34 34 H 1.09002 * 109.60856 * 190.83682 * 6 5 4 35 35 H 1.08996 * 109.75726 * 70.40270 * 6 5 4 36 36 H 0.97002 * 120.00386 * 5.04705 * 10 8 7 37 37 H 0.97003 * 120.00369 * 180.02562 * 16 15 13 38 38 H 1.08997 * 109.46968 * 54.60920 * 27 25 7 39 39 H 1.09002 * 109.47086 * 174.60759 * 27 25 7 40 40 H 1.09000 * 109.47279 * 294.60290 * 27 25 7 41 41 H 1.09003 * 109.61430 * 5.03392 * 28 4 2 42 42 H 1.08998 * 109.61190 * 244.51675 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 1.4631 -2.4454 -0.1046 6 6 1.8581 -3.3285 1.0854 7 7 3.3239 -3.3460 1.1911 8 6 3.9979 -4.5132 1.1911 9 8 5.1981 -4.5221 1.3852 10 7 3.3413 -5.6704 0.9761 11 6 4.0518 -6.9469 1.0854 12 1 4.7990 -6.8803 1.8762 13 6 3.0698 -8.0420 1.4132 14 1 2.0213 -7.8102 1.5290 15 6 3.5099 -9.3396 1.5664 16 7 4.7867 -9.6218 1.4259 17 14 2.2927 -10.6969 1.9735 18 1 1.2745 -10.7881 0.8963 19 1 3.0129 -11.9908 2.0841 20 1 1.6229 -10.3907 3.2630 21 6 4.7420 -7.2618 -0.2432 22 9 5.6536 -6.2453 -0.5476 23 9 5.4209 -8.4806 -0.1386 24 9 3.7829 -7.3473 -1.2581 25 6 4.0416 -2.0679 1.2962 26 1 3.7714 -1.5722 2.2286 27 6 5.5501 -2.3223 1.2684 28 6 3.6465 -1.1846 0.1062 29 1 -0.3634 -0.0956 1.0231 30 1 -0.3634 0.9338 -0.4290 31 1 -0.3633 -0.8384 -0.5944 32 1 1.7356 -2.9424 -1.0356 33 1 0.3885 -2.2641 -0.0848 34 1 1.4908 -4.3424 0.9263 35 1 1.4301 -2.9241 2.0025 36 1 2.3983 -5.6581 0.7490 37 1 5.0963 -10.5347 1.5333 38 1 5.8053 -2.8968 0.3780 39 1 6.0790 -1.3693 1.2498 40 1 5.8407 -2.8817 2.1575 41 1 4.0139 -0.1708 0.2653 42 1 4.0746 -1.5920 -0.8097 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932913138.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:06 Heat of formation + Delta-G solvation = -186.947825 kcal Electronic energy + Delta-G solvation = -31772.238448 eV Core-core repulsion = 26952.676734 eV Total energy + Delta-G solvation = -4819.561713 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.35133 -47.98170 -47.67308 -41.86421 -40.58754 -38.21222 -36.70511 -35.15574 -34.84488 -33.49099 -30.86911 -30.37233 -28.96777 -26.98084 -26.53344 -24.30862 -24.07235 -22.59622 -21.31222 -20.35052 -19.22505 -18.82024 -18.68005 -18.48389 -17.87688 -17.71766 -17.12134 -17.00636 -16.65829 -16.54361 -16.04380 -15.63999 -15.07361 -14.92098 -14.88329 -14.72893 -14.45741 -14.39340 -14.27566 -14.23334 -13.98024 -13.89871 -13.80474 -13.47007 -13.40477 -13.00276 -12.98436 -12.72421 -12.61319 -12.59970 -12.48421 -12.38017 -12.19845 -12.14675 -11.55338 -10.94151 -10.63881 -10.43223 -10.20311 -9.95510 -9.27584 -8.17363 -6.48267 1.46721 1.51950 1.52866 1.58375 1.61004 2.03844 2.16706 2.39367 2.60988 2.95108 2.99197 3.58045 3.71624 3.80911 3.87283 3.93763 4.06466 4.08090 4.20648 4.24901 4.28283 4.47832 4.54130 4.57039 4.67100 4.72938 4.80053 4.88717 4.94242 5.11779 5.14129 5.32501 5.34431 5.47104 5.61760 5.66990 5.72817 5.98854 6.38166 6.56724 7.08621 7.11497 7.22444 7.68666 8.74933 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.018442 B = 0.003627 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.897919 B = 7719.036901 C = 8428.252074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.507 3.493 3 O -0.599 6.599 4 N -0.612 5.612 5 C 0.091 3.909 6 C 0.089 3.911 7 N -0.627 5.627 8 C 0.696 3.304 9 O -0.608 6.608 10 N -0.720 5.720 11 C 0.273 3.727 12 H 0.044 0.956 13 C -0.559 4.559 14 H 0.094 0.906 15 C 0.015 3.985 16 N -0.876 5.876 17 Si 0.982 3.018 18 H -0.264 1.264 19 H -0.289 1.289 20 H -0.262 1.262 21 C 0.412 3.588 22 F -0.218 7.218 23 F -0.153 7.153 24 F -0.204 7.204 25 C 0.156 3.844 26 H 0.082 0.918 27 C -0.124 4.124 28 C 0.106 3.894 29 H 0.115 0.885 30 H 0.092 0.908 31 H 0.112 0.888 32 H 0.075 0.925 33 H 0.145 0.855 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.406 0.594 37 H 0.267 0.733 38 H 0.043 0.957 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.096 0.904 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.627 12.646 -1.598 17.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.299 3.701 3 O -0.480 6.480 4 N -0.345 5.345 5 C -0.032 4.032 6 C -0.033 4.033 7 N -0.366 5.366 8 C 0.398 3.602 9 O -0.488 6.488 10 N -0.377 5.377 11 C 0.165 3.835 12 H 0.062 0.938 13 C -0.596 4.596 14 H 0.112 0.888 15 C -0.190 4.190 16 N -0.510 5.510 17 Si 0.805 3.195 18 H -0.189 1.189 19 H -0.214 1.214 20 H -0.186 1.186 21 C 0.356 3.644 22 F -0.200 7.200 23 F -0.135 7.135 24 F -0.186 7.186 25 C 0.052 3.948 26 H 0.100 0.900 27 C -0.182 4.182 28 C -0.018 4.018 29 H 0.134 0.866 30 H 0.111 0.889 31 H 0.131 0.869 32 H 0.093 0.907 33 H 0.163 0.837 34 H 0.121 0.879 35 H 0.113 0.887 36 H 0.245 0.755 37 H 0.077 0.923 38 H 0.062 0.938 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.114 0.886 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.301 13.025 -1.463 17.306 hybrid contribution 0.085 -1.031 -0.328 1.085 sum -11.216 11.994 -1.791 16.518 Atomic orbital electron populations 1.22017 0.87685 1.06337 1.06621 1.21735 0.92518 0.82016 0.73876 1.90691 1.72119 1.32753 1.52486 1.48223 1.06698 1.07121 1.72450 1.22483 0.99834 0.82556 0.98309 1.22339 0.78636 1.02218 1.00153 1.47305 1.07592 1.03659 1.78033 1.16239 0.84949 0.81058 0.77945 1.90968 1.14234 1.85871 1.57721 1.45259 1.13983 1.03807 1.74615 1.19129 0.93977 0.82625 0.87728 0.93823 1.21181 0.94898 0.91322 1.52162 0.88775 1.25985 0.97475 1.01536 0.94005 1.70537 1.15461 1.21135 1.43832 0.85234 0.78158 0.76716 0.79346 1.18910 1.21434 1.18608 1.23383 0.77047 0.74445 0.89574 1.93070 1.70131 1.62004 1.94785 1.93369 1.81083 1.43486 1.95529 1.92976 1.64916 1.96265 1.64477 1.21418 0.92998 0.82280 0.98115 0.90014 1.21939 0.93076 0.99858 1.03343 1.21949 0.81066 1.00938 0.97841 0.86627 0.88910 0.86918 0.90708 0.83718 0.87888 0.88696 0.75482 0.92298 0.93808 0.91816 0.92259 0.88574 0.91815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.43 9.43 71.24 0.67 -0.75 16 2 C 0.51 9.85 7.80 87.66 0.68 10.53 16 3 O -0.60 -17.55 16.52 -3.02 -0.05 -17.60 16 4 N -0.61 -11.35 2.95 -818.05 -2.41 -13.76 16 5 C 0.09 1.15 6.44 86.41 0.56 1.71 16 6 C 0.09 1.50 6.59 86.41 0.57 2.07 16 7 N -0.63 -17.07 2.95 -812.01 -2.39 -19.47 16 8 C 0.70 26.22 7.74 179.05 1.39 27.60 16 9 O -0.61 -27.83 10.21 -4.00 -0.04 -27.88 16 10 N -0.72 -27.44 4.88 -461.42 -2.25 -29.69 16 11 C 0.27 13.23 2.20 44.24 0.10 13.33 16 12 H 0.04 2.47 7.65 -2.39 -0.02 2.45 16 13 C -0.56 -26.90 8.46 25.60 0.22 -26.69 16 14 H 0.09 4.07 7.74 -2.91 -0.02 4.05 16 15 C 0.02 0.76 5.20 84.65 0.44 1.20 16 16 N -0.88 -47.69 9.50 21.45 0.20 -47.48 16 17 Si 0.98 38.98 29.54 68.60 2.03 41.01 16 18 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 19 H -0.29 -11.61 7.11 99.48 0.71 -10.91 16 20 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 21 C 0.41 20.96 2.81 71.98 0.20 21.16 16 22 F -0.22 -11.20 15.47 44.97 0.70 -10.50 16 23 F -0.15 -8.57 12.91 44.97 0.58 -7.99 16 24 F -0.20 -9.75 16.94 44.97 0.76 -8.99 16 25 C 0.16 4.02 3.65 45.03 0.16 4.18 16 26 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 27 C -0.12 -3.81 7.59 71.98 0.55 -3.26 16 28 C 0.11 2.47 5.90 86.42 0.51 2.98 16 29 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.11 0.33 6.25 -2.38 -0.01 0.31 16 32 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.15 0.57 5.46 -2.39 -0.01 0.56 16 34 H 0.10 1.59 5.58 -2.39 -0.01 1.58 16 35 H 0.09 1.26 8.14 -2.39 -0.02 1.25 16 36 H 0.41 12.56 6.04 -92.71 -0.56 12.00 16 37 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 38 H 0.04 1.59 6.88 -2.39 -0.02 1.57 16 39 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.06 2.13 6.61 -2.39 -0.02 2.11 16 41 H 0.10 2.36 7.02 -2.39 -0.02 2.34 16 42 H 0.06 1.60 8.12 -2.39 -0.02 1.58 16 Total: -1.00 -72.47 341.50 3.69 -68.78 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: 0.52 Total: 19.49 kcal Atomic # 6 Polarization: 48.02 SS G_CDS: 6.04 Total: 54.07 kcal Atomic # 7 Polarization: -103.55 SS G_CDS: -6.85 Total: -110.40 kcal Atomic # 8 Polarization: -45.38 SS G_CDS: -0.09 Total: -45.47 kcal Atomic # 9 Polarization: -29.52 SS G_CDS: 2.04 Total: -27.49 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 2.03 Total: 41.01 kcal Total: -72.47 3.69 -68.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932913138.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.163 kcal (2) G-P(sol) polarization free energy of solvation -72.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds