Wall clock time and date at job start Tue Mar 31 2020 21:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 5 5 N 1.46501 * 109.47084 * 175.00139 * 4 2 1 6 6 C 1.46758 * 124.35387 * 89.99513 * 5 4 2 7 7 C 1.54475 * 105.47755 * 197.01689 * 6 5 4 8 8 C 1.54639 * 101.76343 * 334.58385 * 7 6 5 9 9 C 1.34427 * 124.34517 * 269.69680 * 5 4 2 10 10 O 1.21283 * 124.94122 * 359.57789 * 9 5 4 11 11 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 12 12 C 1.34784 * 120.00075 * 85.00024 * 11 2 1 13 13 O 1.21592 * 119.99578 * 0.02562 * 12 11 2 14 14 N 1.34775 * 120.00414 * 180.02562 * 12 11 2 15 15 C 1.46502 * 119.99846 * 180.02562 * 14 12 11 16 16 H 1.08996 * 109.46878 * 324.99970 * 15 14 12 17 17 C 1.50703 * 109.46566 * 205.00029 * 15 14 12 18 18 H 1.07999 * 120.00022 * 0.02562 * 17 15 14 19 19 C 1.37880 * 119.99444 * 179.97438 * 17 15 14 20 20 N 1.31509 * 120.00256 * 0.02562 * 19 17 15 21 21 Si 1.86807 * 119.99555 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.46750 * 90.00554 * 21 19 17 23 23 H 1.48500 * 109.46792 * 209.99724 * 21 19 17 24 24 H 1.48498 * 109.47145 * 329.99961 * 21 19 17 25 25 C 1.52991 * 109.47063 * 85.00476 * 15 14 12 26 26 F 1.39902 * 109.47653 * 59.99560 * 25 15 14 27 27 F 1.39909 * 109.47202 * 180.02562 * 25 15 14 28 28 F 1.39905 * 109.46927 * 299.99595 * 25 15 14 29 29 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 30 30 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 31 31 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.46750 * 294.99553 * 4 2 1 33 33 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 34 34 H 1.09002 * 110.24906 * 316.01987 * 6 5 4 35 35 H 1.09005 * 110.24145 * 77.92581 * 6 5 4 36 36 H 1.08994 * 110.97250 * 92.70130 * 7 6 5 37 37 H 1.08999 * 110.97220 * 216.47328 * 7 6 5 38 38 H 1.09000 * 110.48267 * 143.47408 * 8 7 6 39 39 H 1.08994 * 110.48323 * 265.98789 * 8 7 6 40 40 H 0.96996 * 120.00792 * 265.00493 * 11 2 1 41 41 H 0.96994 * 119.99639 * 0.02562 * 14 12 11 42 42 H 0.97001 * 119.99790 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5001 -0.8264 1.1906 6 6 4.4249 0.1771 1.7304 7 6 5.7895 -0.1233 1.0716 8 6 5.6566 -1.6287 0.7436 9 6 4.1647 -1.8572 0.6405 10 8 3.6441 -2.8279 0.1328 11 7 2.0183 -0.6907 -1.1961 12 6 2.1471 -0.0184 -2.3572 13 8 1.8583 1.1615 -2.4117 14 7 2.5958 -0.6538 -3.4577 15 6 2.7362 0.0772 -4.7195 16 1 1.9403 0.8173 -4.8011 17 6 2.6441 -0.8889 -5.8725 18 1 2.4954 -1.9419 -5.6842 19 6 2.7487 -0.4282 -7.1679 20 7 2.9292 0.8541 -7.3972 21 14 2.6352 -1.6257 -8.5971 22 1 1.2183 -1.7569 -9.0216 23 1 3.4472 -1.1195 -9.7327 24 1 3.1499 -2.9526 -8.1731 25 6 4.0937 0.7822 -4.7521 26 9 5.1153 -0.1678 -4.6473 27 9 4.2275 1.4807 -5.9569 28 9 4.1792 1.6789 -3.6817 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.7517 -0.1583 2.1369 33 1 1.6054 -1.7199 1.2952 34 1 4.0905 1.1799 1.4648 35 1 4.4977 0.0789 2.8136 36 1 5.9215 0.4637 0.1628 37 1 6.6073 0.0529 1.7703 38 1 6.1468 -1.8576 -0.2027 39 1 6.0787 -2.2327 1.5468 40 1 2.2490 -1.6318 -1.1526 41 1 2.8258 -1.5951 -3.4143 42 1 3.0024 1.1782 -8.3085 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932922554.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:13 Heat of formation + Delta-G solvation = -201.137388 kcal Electronic energy + Delta-G solvation = -31756.405768 eV Core-core repulsion = 26936.228749 eV Total energy + Delta-G solvation = -4820.177019 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -48.27432 -45.92712 -45.54364 -40.62633 -39.19822 -36.60972 -35.89377 -34.38144 -32.66369 -32.21816 -30.46083 -27.85099 -27.70512 -26.35823 -24.49862 -22.39318 -22.11811 -20.95080 -20.01225 -19.56884 -18.29809 -17.03898 -16.91712 -16.75796 -16.62197 -16.52384 -15.90074 -15.46094 -15.15755 -14.83735 -14.45564 -13.98788 -13.88598 -13.74374 -13.51435 -13.19483 -13.05743 -12.84406 -12.68453 -12.52880 -12.42891 -12.32932 -12.21119 -12.15589 -11.89957 -11.79915 -11.74280 -11.63134 -11.24149 -11.13519 -11.06370 -10.79591 -10.72605 -10.34122 -9.89206 -9.59996 -9.42841 -8.91635 -8.67508 -8.62080 -8.06959 -6.18486 -4.41427 2.48016 2.83061 3.22090 3.27131 3.29900 3.36694 3.88589 4.19553 4.24165 4.31046 4.62648 4.63819 4.74669 4.82052 4.88188 4.98602 5.06817 5.20593 5.23787 5.30553 5.41933 5.53291 5.56189 5.66747 5.72810 5.84173 5.91129 5.95835 6.04412 6.22652 6.29534 6.40662 6.91765 6.94991 7.00715 7.31857 7.46616 7.68701 7.79999 8.07264 8.56494 8.78017 9.22305 9.35896 10.73256 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.015423 B = 0.003962 C = 0.003783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.023910 B = 7065.057525 C = 7399.587711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.145 3.855 3 H 0.088 0.912 4 C 0.117 3.883 5 N -0.616 5.616 6 C 0.102 3.898 7 C -0.133 4.133 8 C -0.156 4.156 9 C 0.521 3.479 10 O -0.533 6.533 11 N -0.747 5.747 12 C 0.700 3.300 13 O -0.589 6.589 14 N -0.727 5.727 15 C 0.263 3.737 16 H 0.084 0.916 17 C -0.550 4.550 18 H 0.077 0.923 19 C 0.065 3.935 20 N -0.841 5.841 21 Si 0.915 3.085 22 H -0.276 1.276 23 H -0.283 1.283 24 H -0.271 1.271 25 C 0.416 3.584 26 F -0.210 7.210 27 F -0.138 7.138 28 F -0.217 7.217 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.101 0.899 40 H 0.399 0.601 41 H 0.394 0.606 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.376 -2.247 18.772 19.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.038 3.962 3 H 0.106 0.894 4 C -0.006 4.006 5 N -0.349 5.349 6 C -0.021 4.021 7 C -0.171 4.171 8 C -0.196 4.196 9 C 0.309 3.691 10 O -0.410 6.410 11 N -0.406 5.406 12 C 0.400 3.600 13 O -0.467 6.467 14 N -0.379 5.379 15 C 0.157 3.843 16 H 0.101 0.899 17 C -0.587 4.587 18 H 0.095 0.905 19 C -0.144 4.144 20 N -0.474 5.474 21 Si 0.741 3.259 22 H -0.202 1.202 23 H -0.208 1.208 24 H -0.195 1.195 25 C 0.360 3.640 26 F -0.192 7.192 27 F -0.119 7.119 28 F -0.199 7.199 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.111 0.889 33 H 0.105 0.895 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.104 0.896 37 H 0.108 0.892 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.234 0.766 41 H 0.228 0.772 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.817 -1.471 18.283 18.432 hybrid contribution 0.498 -1.154 -0.703 1.440 sum 2.315 -2.624 17.581 17.926 Atomic orbital electron populations 1.22159 0.95002 1.02164 1.02794 1.21116 0.93960 0.97594 0.83563 0.89384 1.21800 0.78538 1.02417 0.97813 1.48205 1.05996 1.22114 1.58616 1.22096 0.89208 0.92871 0.97919 1.22599 0.96718 0.95464 1.02309 1.22325 0.94278 0.97843 1.05174 1.20916 0.89988 0.81730 0.76454 1.90696 1.74460 1.30979 1.44884 1.45270 1.72603 1.14032 1.08647 1.16072 0.78383 0.85153 0.80395 1.90888 1.57156 1.14152 1.84509 1.45277 1.69667 1.13701 1.09276 1.19560 0.89419 0.94142 0.81181 0.89858 1.20900 1.54635 0.94152 0.89019 0.90539 1.25073 0.94022 0.95886 0.99395 1.70407 1.43022 1.12775 1.21226 0.86220 0.78230 0.80633 0.80793 1.20223 1.20827 1.19522 1.23191 0.90138 0.77236 0.73454 1.92982 1.64333 1.65862 1.96059 1.93400 1.96096 1.79773 1.42638 1.93062 1.97082 1.70901 1.58901 0.91203 0.91949 0.92489 0.88903 0.89458 0.90149 0.91092 0.89600 0.89219 0.87794 0.88041 0.76556 0.77247 0.92204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 9.48 37.16 0.35 -1.55 16 2 C 0.14 1.89 2.88 -67.93 -0.20 1.69 16 3 H 0.09 1.29 7.58 -51.93 -0.39 0.90 16 4 C 0.12 1.14 5.54 -4.04 -0.02 1.12 16 5 N -0.62 -6.47 2.80 -172.41 -0.48 -6.95 16 6 C 0.10 0.79 7.35 -3.13 -0.02 0.77 16 7 C -0.13 -1.04 7.18 -25.10 -0.18 -1.22 16 8 C -0.16 -1.47 6.86 -26.73 -0.18 -1.66 16 9 C 0.52 6.60 7.30 -10.86 -0.08 6.52 16 10 O -0.53 -8.53 15.89 5.55 0.09 -8.44 16 11 N -0.75 -12.29 4.53 -58.67 -0.27 -12.56 16 12 C 0.70 14.81 8.06 -86.91 -0.70 14.11 16 13 O -0.59 -14.40 14.58 5.28 0.08 -14.33 16 14 N -0.73 -16.06 4.99 -59.81 -0.30 -16.36 16 15 C 0.26 6.82 2.21 -69.08 -0.15 6.67 16 16 H 0.08 2.41 7.58 -51.93 -0.39 2.02 16 17 C -0.55 -14.54 8.46 -34.44 -0.29 -14.83 16 18 H 0.08 1.94 7.74 -52.49 -0.41 1.53 16 19 C 0.06 1.73 5.20 -17.82 -0.09 1.63 16 20 N -0.84 -23.52 9.50 55.43 0.53 -22.99 16 21 Si 0.91 20.62 29.54 -169.99 -5.02 15.60 16 22 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 25 C 0.42 11.00 2.81 37.15 0.10 11.10 16 26 F -0.21 -5.36 16.94 2.25 0.04 -5.32 16 27 F -0.14 -3.90 12.92 2.25 0.03 -3.87 16 28 F -0.22 -5.67 15.68 2.25 0.04 -5.64 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.09 0.88 7.92 -51.93 -0.41 0.47 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.40 6.46 6.41 -40.82 -0.26 6.20 16 41 H 0.39 7.98 8.55 -40.82 -0.35 7.63 16 42 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 357.51 15.07 5.39 5.39 Total: -1.00 -33.28 357.51 -6.93 -40.21 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -5.58 Total: 10.91 kcal Atomic # 6 Polarization: 25.82 SS G_CDS: -1.46 Total: 24.36 kcal Atomic # 7 Polarization: -58.35 SS G_CDS: -0.52 Total: -58.86 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: 0.17 Total: -22.76 kcal Atomic # 9 Polarization: -14.94 SS G_CDS: 0.10 Total: -14.84 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.28 -6.93 -40.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932922554.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.930 kcal (2) G-P(sol) polarization free energy of solvation -33.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds