Wall clock time and date at job start Tue Mar 31 2020 21:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 5 5 N 1.46501 * 109.47084 * 175.00139 * 4 2 1 6 6 C 1.46758 * 124.35387 * 89.99513 * 5 4 2 7 7 C 1.54475 * 105.47755 * 197.01689 * 6 5 4 8 8 C 1.54639 * 101.76343 * 334.58385 * 7 6 5 9 9 C 1.34427 * 124.34517 * 269.69680 * 5 4 2 10 10 O 1.21283 * 124.94122 * 359.57789 * 9 5 4 11 11 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 12 12 C 1.34784 * 120.00075 * 85.00024 * 11 2 1 13 13 O 1.21592 * 119.99578 * 0.02562 * 12 11 2 14 14 N 1.34775 * 120.00414 * 180.02562 * 12 11 2 15 15 C 1.46502 * 119.99846 * 180.02562 * 14 12 11 16 16 H 1.08996 * 109.46878 * 324.99970 * 15 14 12 17 17 C 1.50703 * 109.46566 * 205.00029 * 15 14 12 18 18 H 1.07999 * 120.00022 * 0.02562 * 17 15 14 19 19 C 1.37880 * 119.99444 * 179.97438 * 17 15 14 20 20 N 1.31509 * 120.00256 * 0.02562 * 19 17 15 21 21 Si 1.86807 * 119.99555 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.46750 * 90.00554 * 21 19 17 23 23 H 1.48500 * 109.46792 * 209.99724 * 21 19 17 24 24 H 1.48498 * 109.47145 * 329.99961 * 21 19 17 25 25 C 1.52991 * 109.47063 * 85.00476 * 15 14 12 26 26 F 1.39902 * 109.47653 * 59.99560 * 25 15 14 27 27 F 1.39909 * 109.47202 * 180.02562 * 25 15 14 28 28 F 1.39905 * 109.46927 * 299.99595 * 25 15 14 29 29 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 30 30 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 31 31 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.46750 * 294.99553 * 4 2 1 33 33 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 34 34 H 1.09002 * 110.24906 * 316.01987 * 6 5 4 35 35 H 1.09005 * 110.24145 * 77.92581 * 6 5 4 36 36 H 1.08994 * 110.97250 * 92.70130 * 7 6 5 37 37 H 1.08999 * 110.97220 * 216.47328 * 7 6 5 38 38 H 1.09000 * 110.48267 * 143.47408 * 8 7 6 39 39 H 1.08994 * 110.48323 * 265.98789 * 8 7 6 40 40 H 0.96996 * 120.00792 * 265.00493 * 11 2 1 41 41 H 0.96994 * 119.99639 * 0.02562 * 14 12 11 42 42 H 0.97001 * 119.99790 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5001 -0.8264 1.1906 6 6 4.4249 0.1771 1.7304 7 6 5.7895 -0.1233 1.0716 8 6 5.6566 -1.6287 0.7436 9 6 4.1647 -1.8572 0.6405 10 8 3.6441 -2.8279 0.1328 11 7 2.0183 -0.6907 -1.1961 12 6 2.1471 -0.0184 -2.3572 13 8 1.8583 1.1615 -2.4117 14 7 2.5958 -0.6538 -3.4577 15 6 2.7362 0.0772 -4.7195 16 1 1.9403 0.8173 -4.8011 17 6 2.6441 -0.8889 -5.8725 18 1 2.4954 -1.9419 -5.6842 19 6 2.7487 -0.4282 -7.1679 20 7 2.9292 0.8541 -7.3972 21 14 2.6352 -1.6257 -8.5971 22 1 1.2183 -1.7569 -9.0216 23 1 3.4472 -1.1195 -9.7327 24 1 3.1499 -2.9526 -8.1731 25 6 4.0937 0.7822 -4.7521 26 9 5.1153 -0.1678 -4.6473 27 9 4.2275 1.4807 -5.9569 28 9 4.1792 1.6789 -3.6817 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.7517 -0.1583 2.1369 33 1 1.6054 -1.7199 1.2952 34 1 4.0905 1.1799 1.4648 35 1 4.4977 0.0789 2.8136 36 1 5.9215 0.4637 0.1628 37 1 6.6073 0.0529 1.7703 38 1 6.1468 -1.8576 -0.2027 39 1 6.0787 -2.2327 1.5468 40 1 2.2490 -1.6318 -1.1526 41 1 2.8258 -1.5951 -3.4143 42 1 3.0024 1.1782 -8.3085 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932922554.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:12 Heat of formation + Delta-G solvation = -224.449529 kcal Electronic energy + Delta-G solvation = -31757.416658 eV Core-core repulsion = 26936.228749 eV Total energy + Delta-G solvation = -4821.187909 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.42400 -48.05691 -47.73354 -41.60012 -40.74594 -37.68436 -37.09665 -36.20547 -34.53173 -33.37351 -31.70349 -29.70231 -28.44027 -27.21118 -26.59836 -24.03175 -22.89083 -22.47707 -21.60253 -20.52228 -19.98749 -18.88220 -18.80834 -18.58757 -18.06129 -17.75896 -17.37849 -16.92020 -16.60699 -16.26996 -16.04907 -15.39252 -15.14784 -14.96281 -14.77858 -14.66372 -14.63700 -14.47719 -14.38779 -14.29602 -14.04415 -13.98562 -13.88215 -13.59911 -13.34839 -13.08109 -12.95675 -12.79903 -12.74258 -12.62151 -12.29826 -12.24322 -12.15041 -11.84503 -11.60179 -11.24416 -10.82357 -10.69758 -10.32226 -9.85570 -9.63084 -8.22852 -6.53692 1.44450 1.46063 1.54179 1.57193 1.73490 2.09114 2.15283 2.35948 2.54904 2.92560 3.28542 3.45768 3.64374 3.76202 3.78975 3.86271 4.04094 4.10910 4.16526 4.19371 4.32657 4.45748 4.62769 4.69672 4.72264 4.79172 4.83226 4.90174 5.01994 5.04953 5.20426 5.27006 5.42234 5.48753 5.53224 5.63749 5.69333 6.08963 6.13099 6.51064 7.09973 7.15816 7.18368 7.64447 8.70108 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.015423 B = 0.003962 C = 0.003783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.023910 B = 7065.057525 C = 7399.587711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.137 3.863 3 H 0.071 0.929 4 C 0.122 3.878 5 N -0.616 5.616 6 C 0.098 3.902 7 C -0.128 4.128 8 C -0.155 4.155 9 C 0.504 3.496 10 O -0.577 6.577 11 N -0.730 5.730 12 C 0.697 3.303 13 O -0.625 6.625 14 N -0.725 5.725 15 C 0.272 3.728 16 H 0.046 0.954 17 C -0.563 4.563 18 H 0.086 0.914 19 C 0.017 3.983 20 N -0.873 5.873 21 Si 0.984 3.016 22 H -0.269 1.269 23 H -0.281 1.281 24 H -0.262 1.262 25 C 0.415 3.585 26 F -0.204 7.204 27 F -0.150 7.150 28 F -0.218 7.218 29 H 0.033 0.967 30 H 0.098 0.902 31 H 0.065 0.935 32 H 0.135 0.865 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.107 0.893 36 H 0.060 0.940 37 H 0.123 0.877 38 H 0.090 0.910 39 H 0.128 0.872 40 H 0.402 0.598 41 H 0.403 0.597 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.645 -3.302 20.689 21.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.032 3.968 3 H 0.089 0.911 4 C 0.000 4.000 5 N -0.348 5.348 6 C -0.024 4.024 7 C -0.165 4.165 8 C -0.195 4.195 9 C 0.294 3.706 10 O -0.457 6.457 11 N -0.388 5.388 12 C 0.397 3.603 13 O -0.506 6.506 14 N -0.378 5.378 15 C 0.164 3.836 16 H 0.063 0.937 17 C -0.600 4.600 18 H 0.104 0.896 19 C -0.189 4.189 20 N -0.507 5.507 21 Si 0.807 3.193 22 H -0.194 1.194 23 H -0.206 1.206 24 H -0.186 1.186 25 C 0.359 3.641 26 F -0.186 7.186 27 F -0.131 7.131 28 F -0.199 7.199 29 H 0.052 0.948 30 H 0.117 0.883 31 H 0.084 0.916 32 H 0.153 0.847 33 H 0.106 0.894 34 H 0.097 0.903 35 H 0.125 0.875 36 H 0.079 0.921 37 H 0.142 0.858 38 H 0.108 0.892 39 H 0.145 0.855 40 H 0.239 0.761 41 H 0.238 0.762 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.087 -2.529 20.277 20.540 hybrid contribution 0.412 -0.767 -1.209 1.490 sum 2.499 -3.296 19.068 19.511 Atomic orbital electron populations 1.22089 0.93758 1.02751 1.02781 1.21460 0.95022 0.96900 0.83464 0.91079 1.21874 0.78252 1.02638 0.97281 1.48394 1.06633 1.22030 1.57753 1.22351 0.88267 0.91937 0.99794 1.22620 0.98148 0.93671 1.02098 1.22368 0.92137 0.99470 1.05488 1.21536 0.91500 0.81605 0.75987 1.90660 1.75469 1.32740 1.46833 1.45288 1.71329 1.14038 1.08153 1.16238 0.78071 0.84827 0.81169 1.90857 1.58701 1.15848 1.85181 1.45092 1.70116 1.13920 1.08689 1.19149 0.87898 0.93567 0.82937 0.93652 1.21192 1.54809 0.94592 0.89431 0.89583 1.25983 0.93302 0.97538 1.02045 1.70526 1.43683 1.14614 1.21893 0.85154 0.78472 0.78503 0.77164 1.19424 1.20610 1.18578 1.23267 0.90602 0.77237 0.73040 1.92980 1.64062 1.65568 1.96012 1.93375 1.96195 1.80087 1.43431 1.93055 1.97111 1.70976 1.58807 0.94795 0.88334 0.91564 0.84665 0.89408 0.90312 0.87524 0.92115 0.85845 0.89193 0.85451 0.76110 0.76163 0.92062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 9.48 71.98 0.68 -2.76 16 2 C 0.14 3.45 2.88 44.99 0.13 3.58 16 3 H 0.07 2.06 7.58 -2.39 -0.02 2.05 16 4 C 0.12 2.07 5.54 86.38 0.48 2.55 16 5 N -0.62 -11.68 2.80 -817.97 -2.29 -13.97 16 6 C 0.10 1.25 7.35 86.83 0.64 1.89 16 7 C -0.13 -1.73 7.18 31.65 0.23 -1.50 16 8 C -0.15 -2.70 6.86 30.59 0.21 -2.49 16 9 C 0.50 12.26 7.30 87.90 0.64 12.90 16 10 O -0.58 -18.34 15.89 -3.04 -0.05 -18.39 16 11 N -0.73 -24.17 4.53 -457.80 -2.07 -26.25 16 12 C 0.70 30.26 8.06 179.05 1.44 31.71 16 13 O -0.63 -31.67 14.58 -4.00 -0.06 -31.73 16 14 N -0.72 -32.82 4.99 -461.41 -2.30 -35.13 16 15 C 0.27 14.51 2.21 44.24 0.10 14.61 16 16 H 0.05 2.77 7.58 -2.39 -0.02 2.75 16 17 C -0.56 -30.04 8.46 25.60 0.22 -29.82 16 18 H 0.09 4.32 7.74 -2.91 -0.02 4.30 16 19 C 0.02 0.89 5.20 84.66 0.44 1.33 16 20 N -0.87 -49.60 9.50 21.45 0.20 -49.39 16 21 Si 0.98 41.96 29.54 68.60 2.03 43.99 16 22 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 23 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 24 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 25 C 0.42 22.44 2.81 71.98 0.20 22.64 16 26 F -0.20 -10.50 16.94 44.97 0.76 -9.74 16 27 F -0.15 -8.68 12.92 44.97 0.58 -8.10 16 28 F -0.22 -11.64 15.68 44.97 0.70 -10.94 16 29 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.10 1.47 8.14 -2.39 -0.02 1.46 16 31 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.14 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.09 1.56 7.92 -2.39 -0.02 1.54 16 34 H 0.08 1.06 8.14 -2.39 -0.02 1.05 16 35 H 0.11 0.68 8.14 -2.38 -0.02 0.66 16 36 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.09 1.82 8.14 -2.39 -0.02 1.81 16 39 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.40 13.06 6.41 -92.71 -0.59 12.47 16 41 H 0.40 16.56 8.55 -92.71 -0.79 15.77 16 42 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -74.65 357.51 2.61 -72.05 By element: Atomic # 1 Polarization: 33.25 SS G_CDS: -0.31 Total: 32.95 kcal Atomic # 6 Polarization: 49.23 SS G_CDS: 5.41 Total: 54.64 kcal Atomic # 7 Polarization: -118.27 SS G_CDS: -6.46 Total: -124.73 kcal Atomic # 8 Polarization: -50.01 SS G_CDS: -0.11 Total: -50.12 kcal Atomic # 9 Polarization: -30.82 SS G_CDS: 2.05 Total: -28.77 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -74.65 2.61 -72.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932922554.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.404 kcal (2) G-P(sol) polarization free energy of solvation -74.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -224.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds