Wall clock time and date at job start Tue Mar 31 2020 21:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47213 * 2 1 4 4 C 1.53002 * 109.47121 * 120.00303 * 2 1 3 5 5 N 1.46502 * 109.47044 * 175.00108 * 4 2 1 6 6 C 1.46764 * 124.34707 * 269.99719 * 5 4 2 7 7 C 1.54480 * 105.47241 * 197.03818 * 6 5 4 8 8 C 1.54784 * 101.69261 * 334.38904 * 7 6 5 9 9 C 1.34420 * 124.35242 * 90.02020 * 5 4 2 10 10 O 1.21283 * 124.93917 * 359.53285 * 9 5 4 11 11 N 1.46499 * 109.47019 * 239.99708 * 2 1 3 12 12 C 1.34779 * 119.99949 * 85.00038 * 11 2 1 13 13 O 1.21589 * 119.99687 * 359.97438 * 12 11 2 14 14 N 1.34780 * 120.00267 * 180.02562 * 12 11 2 15 15 C 1.46495 * 120.00028 * 179.97438 * 14 12 11 16 16 H 1.09000 * 109.47512 * 35.00167 * 15 14 12 17 17 C 1.50699 * 109.47024 * 154.99526 * 15 14 12 18 18 H 1.07999 * 120.00272 * 0.02562 * 17 15 14 19 19 C 1.37879 * 120.00277 * 179.97438 * 17 15 14 20 20 N 1.31520 * 119.99811 * 0.02562 * 19 17 15 21 21 Si 1.86797 * 120.00497 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46908 * 60.00392 * 21 19 17 23 23 H 1.48496 * 109.47522 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47227 * 300.00839 * 21 19 17 25 25 C 1.52999 * 109.47063 * 274.99697 * 15 14 12 26 26 F 1.39898 * 109.47004 * 60.00408 * 25 15 14 27 27 F 1.39909 * 109.46762 * 179.97438 * 25 15 14 28 28 F 1.39897 * 109.47369 * 300.00010 * 25 15 14 29 29 H 1.09004 * 109.47035 * 299.99752 * 1 2 3 30 30 H 1.08997 * 109.47359 * 59.99984 * 1 2 3 31 31 H 1.09006 * 109.47564 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47350 * 54.99527 * 4 2 1 33 33 H 1.08998 * 109.46759 * 294.99512 * 4 2 1 34 34 H 1.09003 * 110.24343 * 316.03631 * 6 5 4 35 35 H 1.09004 * 110.24843 * 77.94733 * 6 5 4 36 36 H 1.08997 * 110.97191 * 92.70203 * 7 6 5 37 37 H 1.09002 * 110.96643 * 216.46708 * 7 6 5 38 38 H 1.08996 * 110.61291 * 266.40068 * 8 7 6 39 39 H 1.09001 * 110.42713 * 143.71017 * 8 7 6 40 40 H 0.96997 * 120.00547 * 265.00163 * 11 2 1 41 41 H 0.97002 * 119.99721 * 359.97438 * 14 12 11 42 42 H 0.96999 * 120.00125 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8264 1.1905 6 6 4.2257 -1.9488 0.5843 7 6 5.6673 -1.8508 1.1308 8 6 5.7779 -0.3413 1.4549 9 6 4.3471 0.0925 1.6854 10 8 4.0129 1.1221 2.2324 11 7 2.0183 -0.6907 -1.1961 12 6 2.1470 -0.0184 -2.3572 13 8 1.8573 1.1613 -2.4118 14 7 2.5957 -0.6538 -3.4578 15 6 2.7351 0.0768 -4.7198 16 1 3.0459 1.1012 -4.5143 17 6 3.7713 -0.5994 -5.5800 18 1 4.2753 -1.4852 -5.2225 19 6 4.0752 -0.0880 -6.8238 20 7 3.4611 0.9903 -7.2594 21 14 5.3591 -0.9266 -7.8904 22 1 4.9354 -2.3221 -8.1701 23 1 5.5005 -0.1860 -9.1697 24 1 6.6626 -0.9384 -7.1790 25 6 1.3923 0.0887 -5.4532 26 9 0.4304 0.7166 -4.6546 27 9 1.5253 0.7871 -6.6582 28 9 0.9934 -1.2259 -5.7171 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.6053 -1.7198 1.2952 33 1 1.7516 -0.1584 2.1369 34 1 3.7732 -2.8950 0.8813 35 1 4.2254 -1.8557 -0.5018 36 1 5.7858 -2.4561 2.0294 37 1 6.3932 -2.1382 0.3701 38 1 6.2103 0.2010 0.6141 39 1 6.3728 -0.1882 2.3554 40 1 2.2489 -1.6318 -1.1526 41 1 2.8264 -1.5950 -3.4142 42 1 3.6745 1.3499 -8.1346 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932922555.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:20 Heat of formation + Delta-G solvation = -199.385712 kcal Electronic energy + Delta-G solvation = -31280.191759 eV Core-core repulsion = 26460.090698 eV Total energy + Delta-G solvation = -4820.101061 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.31230 -45.96550 -45.58199 -40.61029 -39.33191 -36.69609 -35.86352 -34.45953 -32.77173 -32.27892 -30.52727 -27.95412 -27.70844 -26.35819 -24.55426 -22.52472 -22.06124 -21.07925 -20.15481 -19.54636 -18.42238 -17.08375 -16.92048 -16.81380 -16.65894 -16.57109 -15.88654 -15.65374 -15.29211 -14.81469 -14.32328 -14.08050 -13.97726 -13.87638 -13.49610 -13.24750 -13.02247 -12.88166 -12.85102 -12.55850 -12.36797 -12.29034 -12.26672 -12.20434 -11.95656 -11.86476 -11.79100 -11.69098 -11.27425 -11.16854 -11.08119 -10.87866 -10.77626 -10.40588 -9.87941 -9.67699 -9.51587 -9.02583 -8.72818 -8.65005 -8.16276 -6.23513 -4.47812 2.51392 2.80113 3.15902 3.18667 3.24137 3.26687 3.80508 4.17343 4.18454 4.24483 4.56547 4.58389 4.70685 4.76741 4.86198 4.93642 4.94687 5.19810 5.28646 5.35530 5.42312 5.47878 5.50157 5.60408 5.73148 5.76080 5.85818 5.90877 6.07099 6.23290 6.24439 6.43879 6.79881 6.84999 6.98085 7.21299 7.36646 7.61935 7.68563 8.07652 8.48419 8.66431 9.15363 9.26835 10.67988 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.013456 B = 0.003915 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.423056 B = 7150.458795 C = 8475.905385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.145 3.855 3 H 0.092 0.908 4 C 0.120 3.880 5 N -0.615 5.615 6 C 0.098 3.902 7 C -0.130 4.130 8 C -0.156 4.156 9 C 0.518 3.482 10 O -0.533 6.533 11 N -0.746 5.746 12 C 0.699 3.301 13 O -0.581 6.581 14 N -0.727 5.727 15 C 0.264 3.736 16 H 0.084 0.916 17 C -0.552 4.552 18 H 0.076 0.924 19 C 0.065 3.935 20 N -0.839 5.839 21 Si 0.915 3.085 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.273 1.273 25 C 0.415 3.585 26 F -0.216 7.216 27 F -0.138 7.138 28 F -0.211 7.211 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.106 0.894 39 H 0.099 0.901 40 H 0.387 0.613 41 H 0.392 0.608 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.472 -9.817 14.904 17.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.038 3.962 3 H 0.110 0.890 4 C -0.002 4.002 5 N -0.349 5.349 6 C -0.025 4.025 7 C -0.168 4.168 8 C -0.196 4.196 9 C 0.306 3.694 10 O -0.409 6.409 11 N -0.403 5.403 12 C 0.399 3.601 13 O -0.458 6.458 14 N -0.380 5.380 15 C 0.158 3.842 16 H 0.102 0.898 17 C -0.589 4.589 18 H 0.094 0.906 19 C -0.144 4.144 20 N -0.472 5.472 21 Si 0.742 3.258 22 H -0.199 1.199 23 H -0.209 1.209 24 H -0.198 1.198 25 C 0.359 3.641 26 F -0.198 7.198 27 F -0.119 7.119 28 F -0.193 7.193 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.101 0.899 33 H 0.114 0.886 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.110 0.890 38 H 0.124 0.876 39 H 0.118 0.882 40 H 0.221 0.779 41 H 0.225 0.775 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.905 -7.978 14.940 16.960 hybrid contribution 0.434 -1.392 -0.882 1.704 sum 1.339 -9.369 14.057 16.947 Atomic orbital electron populations 1.22148 0.94906 1.01981 1.03049 1.21164 0.93946 0.98091 0.83027 0.89037 1.21775 0.78390 1.01675 0.98407 1.48174 1.05853 1.22651 1.58226 1.22184 0.92188 0.89502 0.98608 1.22604 0.96247 0.95589 1.02391 1.22364 0.95183 0.97196 1.04858 1.20922 0.88675 0.82765 0.77077 1.90730 1.82174 1.24498 1.43494 1.45152 1.73075 1.12975 1.09076 1.16078 0.78407 0.85350 0.80294 1.90927 1.56261 1.14266 1.84316 1.45260 1.69886 1.13724 1.09106 1.19565 0.88354 0.97115 0.79209 0.89848 1.20816 1.22332 1.14061 1.01703 0.90628 1.25081 0.96468 0.95288 0.97567 1.70399 1.37102 1.20006 1.19696 0.86277 0.80974 0.79406 0.79178 1.19872 1.20879 1.19838 1.23188 0.88501 0.72397 0.80007 1.93072 1.68815 1.83122 1.74834 1.93402 1.94778 1.78437 1.45298 1.92978 1.92490 1.39103 1.94699 0.91820 0.91145 0.92610 0.89873 0.88617 0.90316 0.90616 0.90079 0.88974 0.87554 0.88239 0.77937 0.77479 0.92059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 9.48 37.15 0.35 -1.58 16 2 C 0.14 1.88 2.88 -67.93 -0.20 1.68 16 3 H 0.09 1.55 7.58 -51.93 -0.39 1.16 16 4 C 0.12 1.16 5.50 -4.04 -0.02 1.14 16 5 N -0.62 -6.29 2.75 -172.41 -0.47 -6.76 16 6 C 0.10 0.71 6.51 -3.12 -0.02 0.69 16 7 C -0.13 -0.80 7.19 -25.01 -0.18 -0.98 16 8 C -0.16 -1.39 6.87 -26.66 -0.18 -1.57 16 9 C 0.52 6.61 8.02 -10.86 -0.09 6.52 16 10 O -0.53 -9.08 17.60 5.55 0.10 -8.98 16 11 N -0.75 -10.38 4.38 -58.68 -0.26 -10.64 16 12 C 0.70 13.70 8.06 -86.91 -0.70 13.00 16 13 O -0.58 -14.10 14.58 5.29 0.08 -14.02 16 14 N -0.73 -14.47 4.99 -59.82 -0.30 -14.77 16 15 C 0.26 6.51 2.21 -69.09 -0.15 6.36 16 16 H 0.08 2.35 7.58 -51.93 -0.39 1.96 16 17 C -0.55 -13.80 8.47 -34.44 -0.29 -14.09 16 18 H 0.08 1.76 7.74 -52.49 -0.41 1.35 16 19 C 0.06 1.67 5.20 -17.82 -0.09 1.58 16 20 N -0.84 -22.95 9.50 55.43 0.53 -22.42 16 21 Si 0.92 19.76 29.54 -169.99 -5.02 14.74 16 22 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 23 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 24 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 25 C 0.42 10.70 2.81 37.16 0.10 10.80 16 26 F -0.22 -5.60 15.67 2.25 0.04 -5.56 16 27 F -0.14 -3.84 12.91 2.25 0.03 -3.82 16 28 F -0.21 -5.18 16.94 2.25 0.04 -5.14 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.10 0.95 7.93 -51.93 -0.41 0.54 16 34 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.08 0.61 7.08 -51.93 -0.37 0.24 16 36 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.11 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.39 4.13 7.18 -40.82 -0.29 3.83 16 41 H 0.39 6.55 8.55 -40.82 -0.35 6.20 16 42 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 358.59 15.07 5.40 5.40 Total: -1.00 -34.10 358.59 -6.87 -40.96 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -5.55 Total: 7.46 kcal Atomic # 6 Polarization: 25.01 SS G_CDS: -1.47 Total: 23.54 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: -0.50 Total: -54.58 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: 0.17 Total: -23.01 kcal Atomic # 9 Polarization: -14.62 SS G_CDS: 0.10 Total: -14.52 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.10 -6.87 -40.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932922555.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.422 kcal (2) G-P(sol) polarization free energy of solvation -34.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds