Wall clock time and date at job start Tue Mar 31 2020 21:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47213 * 2 1 4 4 C 1.53002 * 109.47121 * 120.00303 * 2 1 3 5 5 N 1.46502 * 109.47044 * 175.00108 * 4 2 1 6 6 C 1.46764 * 124.34707 * 269.99719 * 5 4 2 7 7 C 1.54480 * 105.47241 * 197.03818 * 6 5 4 8 8 C 1.54784 * 101.69261 * 334.38904 * 7 6 5 9 9 C 1.34420 * 124.35242 * 90.02020 * 5 4 2 10 10 O 1.21283 * 124.93917 * 359.53285 * 9 5 4 11 11 N 1.46499 * 109.47019 * 239.99708 * 2 1 3 12 12 C 1.34779 * 119.99949 * 85.00038 * 11 2 1 13 13 O 1.21589 * 119.99687 * 359.97438 * 12 11 2 14 14 N 1.34780 * 120.00267 * 180.02562 * 12 11 2 15 15 C 1.46495 * 120.00028 * 179.97438 * 14 12 11 16 16 H 1.09000 * 109.47512 * 35.00167 * 15 14 12 17 17 C 1.50699 * 109.47024 * 154.99526 * 15 14 12 18 18 H 1.07999 * 120.00272 * 0.02562 * 17 15 14 19 19 C 1.37879 * 120.00277 * 179.97438 * 17 15 14 20 20 N 1.31520 * 119.99811 * 0.02562 * 19 17 15 21 21 Si 1.86797 * 120.00497 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46908 * 60.00392 * 21 19 17 23 23 H 1.48496 * 109.47522 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47227 * 300.00839 * 21 19 17 25 25 C 1.52999 * 109.47063 * 274.99697 * 15 14 12 26 26 F 1.39898 * 109.47004 * 60.00408 * 25 15 14 27 27 F 1.39909 * 109.46762 * 179.97438 * 25 15 14 28 28 F 1.39897 * 109.47369 * 300.00010 * 25 15 14 29 29 H 1.09004 * 109.47035 * 299.99752 * 1 2 3 30 30 H 1.08997 * 109.47359 * 59.99984 * 1 2 3 31 31 H 1.09006 * 109.47564 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47350 * 54.99527 * 4 2 1 33 33 H 1.08998 * 109.46759 * 294.99512 * 4 2 1 34 34 H 1.09003 * 110.24343 * 316.03631 * 6 5 4 35 35 H 1.09004 * 110.24843 * 77.94733 * 6 5 4 36 36 H 1.08997 * 110.97191 * 92.70203 * 7 6 5 37 37 H 1.09002 * 110.96643 * 216.46708 * 7 6 5 38 38 H 1.08996 * 110.61291 * 266.40068 * 8 7 6 39 39 H 1.09001 * 110.42713 * 143.71017 * 8 7 6 40 40 H 0.96997 * 120.00547 * 265.00163 * 11 2 1 41 41 H 0.97002 * 119.99721 * 359.97438 * 14 12 11 42 42 H 0.96999 * 120.00125 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8264 1.1905 6 6 4.2257 -1.9488 0.5843 7 6 5.6673 -1.8508 1.1308 8 6 5.7779 -0.3413 1.4549 9 6 4.3471 0.0925 1.6854 10 8 4.0129 1.1221 2.2324 11 7 2.0183 -0.6907 -1.1961 12 6 2.1470 -0.0184 -2.3572 13 8 1.8573 1.1613 -2.4118 14 7 2.5957 -0.6538 -3.4578 15 6 2.7351 0.0768 -4.7198 16 1 3.0459 1.1012 -4.5143 17 6 3.7713 -0.5994 -5.5800 18 1 4.2753 -1.4852 -5.2225 19 6 4.0752 -0.0880 -6.8238 20 7 3.4611 0.9903 -7.2594 21 14 5.3591 -0.9266 -7.8904 22 1 4.9354 -2.3221 -8.1701 23 1 5.5005 -0.1860 -9.1697 24 1 6.6626 -0.9384 -7.1790 25 6 1.3923 0.0887 -5.4532 26 9 0.4304 0.7166 -4.6546 27 9 1.5253 0.7871 -6.6582 28 9 0.9934 -1.2259 -5.7171 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.6053 -1.7198 1.2952 33 1 1.7516 -0.1584 2.1369 34 1 3.7732 -2.8950 0.8813 35 1 4.2254 -1.8557 -0.5018 36 1 5.7858 -2.4561 2.0294 37 1 6.3932 -2.1382 0.3701 38 1 6.2103 0.2010 0.6141 39 1 6.3728 -0.1882 2.3554 40 1 2.2489 -1.6318 -1.1526 41 1 2.8264 -1.5950 -3.4142 42 1 3.6745 1.3499 -8.1346 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932922555.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:19 Heat of formation + Delta-G solvation = -224.171538 kcal Electronic energy + Delta-G solvation = -31281.266553 eV Core-core repulsion = 26460.090698 eV Total energy + Delta-G solvation = -4821.175855 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.39539 -48.02887 -47.71044 -41.56659 -40.78633 -37.83104 -36.99856 -36.19311 -34.52851 -33.39809 -31.70599 -29.69475 -28.43669 -27.20970 -26.56454 -24.04327 -22.80954 -22.52649 -21.70617 -20.48984 -20.03685 -18.85882 -18.78383 -18.55209 -18.01480 -17.72263 -17.44460 -16.94866 -16.60800 -16.28733 -15.84270 -15.48481 -15.21225 -14.95269 -14.87620 -14.65673 -14.54597 -14.44319 -14.36314 -14.26775 -14.01189 -13.90574 -13.84865 -13.64681 -13.25036 -13.13039 -12.98202 -12.83185 -12.73932 -12.58369 -12.32976 -12.20442 -12.09530 -11.78405 -11.58001 -11.25016 -10.85871 -10.65819 -10.36081 -9.89053 -9.58267 -8.18795 -6.50172 1.48141 1.51330 1.55030 1.59237 1.70519 2.06435 2.18516 2.39092 2.58206 2.96868 3.31231 3.46721 3.67317 3.75047 3.81111 3.90419 4.06547 4.08986 4.20909 4.23144 4.31772 4.50906 4.62726 4.69422 4.71788 4.78305 4.86628 4.89029 5.02958 5.12340 5.24137 5.26110 5.45309 5.54091 5.56590 5.62428 5.67169 6.12840 6.14561 6.55159 7.15106 7.18383 7.24059 7.69273 8.73837 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.013456 B = 0.003915 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.423056 B = 7150.458795 C = 8475.905385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.145 3.855 3 H 0.042 0.958 4 C 0.125 3.875 5 N -0.613 5.613 6 C 0.090 3.910 7 C -0.118 4.118 8 C -0.156 4.156 9 C 0.499 3.501 10 O -0.590 6.590 11 N -0.718 5.718 12 C 0.695 3.305 13 O -0.633 6.633 14 N -0.717 5.717 15 C 0.273 3.727 16 H 0.039 0.961 17 C -0.558 4.558 18 H 0.096 0.904 19 C 0.013 3.987 20 N -0.877 5.877 21 Si 0.985 3.015 22 H -0.263 1.263 23 H -0.288 1.288 24 H -0.261 1.261 25 C 0.412 3.588 26 F -0.220 7.220 27 F -0.152 7.152 28 F -0.202 7.202 29 H 0.082 0.918 30 H 0.029 0.971 31 H 0.085 0.915 32 H 0.129 0.871 33 H 0.093 0.907 34 H 0.116 0.884 35 H 0.069 0.931 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.098 0.902 39 H 0.110 0.890 40 H 0.409 0.591 41 H 0.411 0.589 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.491 -13.764 15.795 21.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.038 3.962 3 H 0.060 0.940 4 C 0.003 3.997 5 N -0.345 5.345 6 C -0.032 4.032 7 C -0.155 4.155 8 C -0.196 4.196 9 C 0.289 3.711 10 O -0.471 6.471 11 N -0.376 5.376 12 C 0.395 3.605 13 O -0.513 6.513 14 N -0.372 5.372 15 C 0.165 3.835 16 H 0.057 0.943 17 C -0.595 4.595 18 H 0.114 0.886 19 C -0.192 4.192 20 N -0.511 5.511 21 Si 0.808 3.192 22 H -0.188 1.188 23 H -0.214 1.214 24 H -0.185 1.185 25 C 0.355 3.645 26 F -0.202 7.202 27 F -0.134 7.134 28 F -0.184 7.184 29 H 0.101 0.899 30 H 0.048 0.952 31 H 0.104 0.896 32 H 0.147 0.853 33 H 0.111 0.889 34 H 0.134 0.866 35 H 0.087 0.913 36 H 0.121 0.879 37 H 0.125 0.875 38 H 0.116 0.884 39 H 0.128 0.872 40 H 0.247 0.753 41 H 0.247 0.753 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.930 -12.042 15.870 20.014 hybrid contribution 0.061 -0.143 -1.111 1.121 sum 1.991 -12.184 14.759 19.242 Atomic orbital electron populations 1.22077 0.93724 1.03566 1.01996 1.21234 0.94868 0.96130 0.83923 0.93962 1.21811 0.78425 1.03552 0.95929 1.48374 1.06069 1.22890 1.57140 1.22497 0.92886 0.89702 0.98104 1.22645 0.95855 0.93267 1.03754 1.22406 0.92699 0.99401 1.05071 1.21701 0.90697 0.82299 0.76447 1.90688 1.83346 1.26890 1.46165 1.44883 1.71576 1.13747 1.07420 1.16283 0.78000 0.84834 0.81360 1.90901 1.58313 1.16876 1.85245 1.44931 1.70046 1.14328 1.07847 1.19115 0.87881 0.95560 0.80964 0.94304 1.21192 1.22129 1.14473 1.01693 0.88561 1.26046 0.98393 0.95731 0.99068 1.70550 1.38898 1.21678 1.20017 0.85185 0.78579 0.78413 0.76981 1.18794 1.21390 1.18532 1.23393 0.88947 0.72496 0.79644 1.93063 1.69028 1.83299 1.74856 1.93374 1.94889 1.78869 1.46235 1.92979 1.92445 1.38311 1.94648 0.89926 0.95195 0.89574 0.85290 0.88854 0.86636 0.91309 0.87912 0.87470 0.88397 0.87175 0.75334 0.75276 0.92272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 9.48 71.98 0.68 -2.86 16 2 C 0.15 3.70 2.88 44.99 0.13 3.83 16 3 H 0.04 1.52 7.58 -2.39 -0.02 1.51 16 4 C 0.13 2.13 5.50 86.38 0.48 2.60 16 5 N -0.61 -11.29 2.75 -817.98 -2.25 -13.53 16 6 C 0.09 0.95 6.51 86.83 0.57 1.51 16 7 C -0.12 -1.02 7.19 31.71 0.23 -0.79 16 8 C -0.16 -2.58 6.87 30.64 0.21 -2.37 16 9 C 0.50 12.64 8.02 87.90 0.70 13.34 16 10 O -0.59 -21.02 17.60 -3.04 -0.05 -21.07 16 11 N -0.72 -19.12 4.38 -457.82 -2.00 -21.12 16 12 C 0.70 27.52 8.06 179.05 1.44 28.96 16 13 O -0.63 -32.23 14.58 -4.00 -0.06 -32.29 16 14 N -0.72 -28.22 4.99 -461.42 -2.30 -30.52 16 15 C 0.27 13.68 2.21 44.25 0.10 13.78 16 16 H 0.04 2.31 7.58 -2.39 -0.02 2.29 16 17 C -0.56 -27.50 8.47 25.60 0.22 -27.28 16 18 H 0.10 4.24 7.74 -2.91 -0.02 4.22 16 19 C 0.01 0.65 5.20 84.65 0.44 1.09 16 20 N -0.88 -48.84 9.50 21.45 0.20 -48.64 16 21 Si 0.99 39.60 29.54 68.60 2.03 41.63 16 22 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 23 H -0.29 -11.72 7.11 99.48 0.71 -11.01 16 24 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 25 C 0.41 21.54 2.81 71.98 0.20 21.74 16 26 F -0.22 -11.72 15.67 44.97 0.70 -11.01 16 27 F -0.15 -8.72 12.91 44.97 0.58 -8.14 16 28 F -0.20 -9.80 16.94 44.97 0.76 -9.04 16 29 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 32 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.09 1.72 7.93 -2.39 -0.02 1.70 16 34 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.07 0.85 7.08 -2.39 -0.02 0.84 16 36 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.41 7.39 7.18 -92.71 -0.67 6.73 16 41 H 0.41 12.85 8.55 -92.71 -0.79 12.05 16 42 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 Total: -1.00 -79.84 358.59 2.63 -77.21 By element: Atomic # 1 Polarization: 23.36 SS G_CDS: -0.38 Total: 22.98 kcal Atomic # 6 Polarization: 48.16 SS G_CDS: 5.40 Total: 53.56 kcal Atomic # 7 Polarization: -107.47 SS G_CDS: -6.35 Total: -113.82 kcal Atomic # 8 Polarization: -53.26 SS G_CDS: -0.11 Total: -53.37 kcal Atomic # 9 Polarization: -30.24 SS G_CDS: 2.05 Total: -28.19 kcal Atomic # 14 Polarization: 39.60 SS G_CDS: 2.03 Total: 41.63 kcal Total: -79.84 2.63 -77.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932922555.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.961 kcal (2) G-P(sol) polarization free energy of solvation -79.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -224.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds