Wall clock time and date at job start Tue Mar 31 2020 21:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47503 * 2 1 4 4 C 1.53007 * 109.46808 * 240.00371 * 2 1 3 5 5 N 1.46500 * 109.46790 * 185.00052 * 4 2 1 6 6 C 1.46766 * 124.35285 * 89.99674 * 5 4 2 7 7 C 1.54473 * 105.47678 * 197.01808 * 6 5 4 8 8 C 1.54625 * 101.76377 * 334.58234 * 7 6 5 9 9 C 1.34420 * 124.35006 * 269.69856 * 5 4 2 10 10 O 1.21279 * 124.94277 * 359.57307 * 9 5 4 11 11 N 1.46495 * 109.47247 * 120.00504 * 2 1 3 12 12 C 1.34784 * 119.99850 * 274.99862 * 11 2 1 13 13 O 1.21587 * 119.99512 * 359.97438 * 12 11 2 14 14 N 1.34777 * 120.00131 * 180.02562 * 12 11 2 15 15 C 1.46496 * 120.00037 * 180.02562 * 14 12 11 16 16 H 1.09001 * 109.47054 * 324.99327 * 15 14 12 17 17 C 1.50697 * 109.47016 * 205.00057 * 15 14 12 18 18 H 1.07998 * 120.00039 * 359.97438 * 17 15 14 19 19 C 1.37881 * 120.00021 * 180.02562 * 17 15 14 20 20 N 1.31519 * 119.99891 * 359.97438 * 19 17 15 21 21 Si 1.86800 * 120.00032 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47419 * 89.99289 * 21 19 17 23 23 H 1.48499 * 109.47011 * 209.99851 * 21 19 17 24 24 H 1.48506 * 109.46838 * 329.99138 * 21 19 17 25 25 C 1.52997 * 109.47294 * 84.99596 * 15 14 12 26 26 F 1.39905 * 109.47157 * 179.97438 * 25 15 14 27 27 F 1.39900 * 109.47010 * 60.00333 * 25 15 14 28 28 F 1.39897 * 109.47422 * 300.00024 * 25 15 14 29 29 H 1.08998 * 109.46978 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46951 * 300.00084 * 1 2 3 31 31 H 1.08999 * 109.47274 * 59.99645 * 1 2 3 32 32 H 1.09000 * 109.47114 * 304.99729 * 4 2 1 33 33 H 1.08993 * 109.47532 * 64.99961 * 4 2 1 34 34 H 1.09004 * 110.24441 * 316.02261 * 6 5 4 35 35 H 1.09002 * 110.24130 * 77.92698 * 6 5 4 36 36 H 1.08998 * 110.97187 * 92.70738 * 7 6 5 37 37 H 1.09003 * 110.96829 * 216.46702 * 7 6 5 38 38 H 1.09005 * 110.48682 * 143.48117 * 8 7 6 39 39 H 1.09003 * 110.48728 * 265.98566 * 8 7 6 40 40 H 0.97004 * 120.00600 * 94.99893 * 11 2 1 41 41 H 0.97005 * 119.99645 * 359.97438 * 14 12 11 42 42 H 0.97001 * 120.00022 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 7 3.5000 -0.8264 -1.1907 6 6 4.2258 -1.9487 -0.5845 7 6 5.6664 -1.4368 -0.3635 8 6 5.7779 -0.3340 -1.4416 9 6 4.3471 0.0900 -1.6902 10 8 4.0130 1.1096 -2.2556 11 7 2.0183 -0.6907 1.1961 12 6 2.1471 -0.0184 2.3571 13 8 1.8583 1.1615 2.4116 14 7 2.5969 -0.6536 3.4574 15 6 2.7363 0.0770 4.7195 16 1 3.0463 1.1016 4.5139 17 6 3.7734 -0.5986 5.5791 18 1 4.2778 -1.4839 5.2213 19 6 4.0774 -0.0871 6.8229 20 7 3.4627 0.9908 7.2588 21 14 5.3635 -0.9241 7.8881 22 1 6.6998 -0.3454 7.5977 23 1 5.0333 -0.7132 9.3205 24 1 5.3795 -2.3795 7.5931 25 6 1.3939 0.0880 5.4535 26 9 1.5272 0.7852 6.6590 27 9 0.9960 -1.2270 5.7175 28 9 0.4311 0.7152 4.6555 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.6053 -1.7198 -1.2953 33 1 1.7516 -0.1583 -2.1370 34 1 3.7718 -2.2208 0.3684 35 1 4.2275 -2.8050 -1.2590 36 1 5.7827 -1.0184 0.6362 37 1 6.3934 -2.2296 -0.5399 38 1 6.3681 0.5040 -1.0705 39 1 6.2189 -0.7355 -2.3540 40 1 2.2491 -1.6319 1.1525 41 1 2.8275 -1.5948 3.4138 42 1 3.6769 1.3509 8.1337 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932922556.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:24 Heat of formation + Delta-G solvation = -222.585440 kcal Electronic energy + Delta-G solvation = -31377.982813 eV Core-core repulsion = 26556.875736 eV Total energy + Delta-G solvation = -4821.107076 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.39464 -48.02810 -47.70974 -41.58117 -40.78125 -37.84477 -36.98856 -36.18797 -34.52956 -33.42114 -31.71094 -29.69769 -28.43988 -27.22073 -26.56471 -24.03199 -22.81213 -22.54295 -21.70832 -20.51033 -20.04682 -18.85471 -18.78796 -18.55712 -17.95608 -17.70779 -17.29999 -17.22668 -16.69402 -16.12916 -15.87046 -15.37721 -15.19280 -14.95751 -14.88809 -14.76655 -14.58351 -14.44672 -14.37259 -14.26831 -14.01121 -13.92267 -13.85473 -13.60126 -13.23674 -13.11673 -12.96706 -12.85563 -12.73305 -12.58185 -12.34806 -12.19216 -12.09303 -11.81539 -11.56563 -11.24847 -10.85273 -10.66393 -10.35549 -9.88469 -9.58311 -8.18952 -6.50073 1.48061 1.49935 1.54526 1.60513 1.70242 2.07700 2.18906 2.38947 2.58383 2.96988 3.30387 3.45824 3.65958 3.73713 3.81076 3.90548 4.05291 4.09410 4.20782 4.21791 4.30071 4.51244 4.60443 4.67576 4.73318 4.77454 4.86910 4.91522 5.02988 5.10673 5.23821 5.26258 5.45572 5.53592 5.56020 5.62166 5.67392 6.12949 6.14497 6.55595 7.15195 7.18377 7.23886 7.69372 8.73908 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.013585 B = 0.003997 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.631615 B = 7003.574050 C = 8336.052637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.145 3.855 3 H 0.042 0.958 4 C 0.125 3.875 5 N -0.614 5.614 6 C 0.097 3.903 7 C -0.126 4.126 8 C -0.151 4.151 9 C 0.499 3.501 10 O -0.590 6.590 11 N -0.719 5.719 12 C 0.696 3.304 13 O -0.633 6.633 14 N -0.717 5.717 15 C 0.273 3.727 16 H 0.039 0.961 17 C -0.557 4.557 18 H 0.097 0.903 19 C 0.012 3.988 20 N -0.877 5.877 21 Si 0.985 3.015 22 H -0.271 1.271 23 H -0.288 1.288 24 H -0.254 1.254 25 C 0.412 3.588 26 F -0.152 7.152 27 F -0.202 7.202 28 F -0.220 7.220 29 H 0.085 0.915 30 H 0.029 0.971 31 H 0.082 0.918 32 H 0.128 0.872 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.108 0.892 36 H 0.067 0.933 37 H 0.124 0.876 38 H 0.091 0.909 39 H 0.127 0.873 40 H 0.408 0.592 41 H 0.411 0.589 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.526 -13.596 -15.572 20.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.039 3.961 3 H 0.061 0.939 4 C 0.002 3.998 5 N -0.346 5.346 6 C -0.025 4.025 7 C -0.164 4.164 8 C -0.191 4.191 9 C 0.289 3.711 10 O -0.471 6.471 11 N -0.377 5.377 12 C 0.396 3.604 13 O -0.513 6.513 14 N -0.371 5.371 15 C 0.165 3.835 16 H 0.057 0.943 17 C -0.594 4.594 18 H 0.115 0.885 19 C -0.193 4.193 20 N -0.512 5.512 21 Si 0.808 3.192 22 H -0.196 1.196 23 H -0.214 1.214 24 H -0.178 1.178 25 C 0.355 3.645 26 F -0.134 7.134 27 F -0.184 7.184 28 F -0.202 7.202 29 H 0.104 0.896 30 H 0.048 0.952 31 H 0.101 0.899 32 H 0.146 0.854 33 H 0.112 0.888 34 H 0.101 0.899 35 H 0.126 0.874 36 H 0.086 0.914 37 H 0.142 0.858 38 H 0.110 0.890 39 H 0.145 0.855 40 H 0.246 0.754 41 H 0.247 0.753 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.963 -11.886 -15.655 19.753 hybrid contribution 0.055 -0.150 1.103 1.114 sum 2.018 -12.036 -14.552 18.992 Atomic orbital electron populations 1.22080 0.93729 1.03557 1.02014 1.21236 0.94858 0.96146 0.83877 0.93920 1.21797 0.78468 1.03511 0.95987 1.48386 1.06076 1.22671 1.57485 1.22455 0.91853 0.88747 0.99402 1.22630 0.96907 0.98619 0.98249 1.22355 0.92599 1.01360 1.02804 1.21707 0.90689 0.82058 0.76655 1.90688 1.83337 1.27402 1.45637 1.44947 1.71608 1.13709 1.07451 1.16279 0.77978 0.84830 0.81347 1.90901 1.58334 1.16848 1.85232 1.44927 1.70005 1.14332 1.07868 1.19117 0.87886 0.95565 0.80960 0.94296 1.21222 1.21994 1.14493 1.01655 0.88531 1.26045 0.98389 0.95751 0.99070 1.70558 1.38826 1.21735 1.20042 0.85136 0.77967 0.79331 0.76744 1.19641 1.21369 1.17765 1.23398 0.88937 0.72496 0.79656 1.93374 1.94880 1.78934 1.46181 1.92979 1.92473 1.38289 1.94647 1.93063 1.68978 1.83329 1.74878 0.89598 0.95175 0.89908 0.85368 0.88805 0.89875 0.87419 0.91446 0.85778 0.89044 0.85508 0.75368 0.75291 0.92290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 9.48 71.98 0.68 -2.86 16 2 C 0.15 3.71 2.88 44.99 0.13 3.84 16 3 H 0.04 1.53 7.58 -2.39 -0.02 1.52 16 4 C 0.12 2.13 5.51 86.38 0.48 2.60 16 5 N -0.61 -11.29 2.75 -817.98 -2.25 -13.54 16 6 C 0.10 1.03 7.07 86.83 0.61 1.64 16 7 C -0.13 -1.46 7.18 31.65 0.23 -1.23 16 8 C -0.15 -2.47 6.86 30.59 0.21 -2.26 16 9 C 0.50 12.55 8.02 87.90 0.71 13.26 16 10 O -0.59 -20.88 17.59 -3.03 -0.05 -20.93 16 11 N -0.72 -19.08 4.51 -457.80 -2.06 -21.14 16 12 C 0.70 27.44 8.06 179.05 1.44 28.88 16 13 O -0.63 -32.14 14.58 -3.99 -0.06 -32.20 16 14 N -0.72 -28.11 4.99 -461.42 -2.30 -30.42 16 15 C 0.27 13.64 2.21 44.24 0.10 13.74 16 16 H 0.04 2.31 7.58 -2.39 -0.02 2.29 16 17 C -0.56 -27.37 8.47 25.60 0.22 -27.15 16 18 H 0.10 4.25 7.74 -2.91 -0.02 4.23 16 19 C 0.01 0.63 5.20 84.65 0.44 1.07 16 20 N -0.88 -48.80 9.50 21.45 0.20 -48.59 16 21 Si 0.98 39.57 29.54 68.60 2.03 41.59 16 22 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 23 H -0.29 -11.73 7.11 99.48 0.71 -11.02 16 24 H -0.25 -9.44 7.11 99.48 0.71 -8.73 16 25 C 0.41 21.50 2.81 71.98 0.20 21.70 16 26 F -0.15 -8.71 12.91 44.97 0.58 -8.13 16 27 F -0.20 -9.78 16.94 44.97 0.76 -9.02 16 28 F -0.22 -11.70 15.68 44.97 0.71 -10.99 16 29 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.09 1.73 7.92 -2.39 -0.02 1.71 16 34 H 0.08 0.80 5.95 -2.38 -0.01 0.78 16 35 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 39 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.41 7.37 6.52 -92.70 -0.60 6.76 16 41 H 0.41 12.79 8.55 -92.70 -0.79 12.00 16 42 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 Total: -1.00 -79.65 357.46 2.68 -76.96 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: -0.31 Total: 23.18 kcal Atomic # 6 Polarization: 47.79 SS G_CDS: 5.44 Total: 53.24 kcal Atomic # 7 Polarization: -107.28 SS G_CDS: -6.41 Total: -113.69 kcal Atomic # 8 Polarization: -53.02 SS G_CDS: -0.11 Total: -53.14 kcal Atomic # 9 Polarization: -30.19 SS G_CDS: 2.05 Total: -28.15 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 2.03 Total: 41.59 kcal Total: -79.65 2.68 -76.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932922556.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.623 kcal (2) G-P(sol) polarization free energy of solvation -79.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -222.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds