Wall clock time and date at job start Tue Mar 31 2020 20:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.52227 * 2 1 4 4 C 1.53196 * 109.48692 * 239.91409 * 2 1 3 5 5 N 1.46925 * 108.76374 * 185.40070 * 4 2 1 6 6 C 1.36938 * 120.62592 * 233.59458 * 5 4 2 7 7 H 1.08006 * 120.00433 * 27.69805 * 6 5 4 8 8 C 1.38813 * 120.00077 * 207.69714 * 6 5 4 9 9 N 1.31627 * 119.99508 * 17.35473 * 8 6 5 10 10 Si 1.86799 * 120.00410 * 197.35922 * 8 6 5 11 11 H 1.48499 * 109.46919 * 59.99949 * 10 8 6 12 12 H 1.48502 * 109.47149 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47051 * 300.00074 * 10 8 6 14 14 C 1.46918 * 118.74313 * 53.61733 * 5 4 2 15 15 C 1.53193 * 108.77353 * 306.39309 * 14 5 4 16 16 C 1.53043 * 109.49574 * 120.08540 * 2 1 3 17 17 H 1.08994 * 109.46420 * 61.31191 * 16 2 1 18 18 N 1.46499 * 109.45965 * 301.33340 * 16 2 1 19 19 C 1.34774 * 119.99688 * 154.97315 * 18 16 2 20 20 O 1.21274 * 120.00480 * 0.28292 * 19 18 16 21 21 C 1.50705 * 119.99919 * 180.02562 * 19 18 16 22 22 C 1.50699 * 109.47370 * 180.02562 * 21 19 18 23 23 C 1.38655 * 120.79429 * 264.72418 * 22 21 19 24 24 C 1.38186 * 119.17759 * 179.72970 * 23 22 21 25 25 N 1.31883 * 120.79300 * 0.55038 * 24 23 22 26 26 C 1.31844 * 121.74035 * 359.72049 * 25 24 23 27 27 C 1.38353 * 120.74548 * 359.97438 * 26 25 24 28 28 Cl 1.73597 * 120.43605 * 179.97438 * 27 26 25 29 29 H 1.08998 * 109.46897 * 299.91340 * 1 2 3 30 30 H 1.08994 * 109.46900 * 59.91769 * 1 2 3 31 31 H 1.08999 * 109.46734 * 179.91640 * 1 2 3 32 32 H 1.09000 * 109.58177 * 65.62103 * 4 2 1 33 33 H 1.09001 * 109.59478 * 305.19060 * 4 2 1 34 34 H 0.97002 * 119.99625 * 180.02562 * 9 8 6 35 35 H 1.09001 * 109.59114 * 186.60768 * 14 5 4 36 36 H 1.09001 * 109.70217 * 66.24271 * 14 5 4 37 37 H 1.08998 * 109.50090 * 294.67725 * 15 14 5 38 38 H 1.09004 * 109.52219 * 174.60288 * 15 14 5 39 39 H 0.97000 * 120.00389 * 334.98045 * 18 16 2 40 40 H 1.09004 * 109.46911 * 300.00081 * 21 19 18 41 41 H 1.08997 * 109.46997 * 60.00095 * 21 19 18 42 42 H 1.08002 * 120.40756 * 359.97189 * 23 22 21 43 43 H 1.07994 * 119.60611 * 180.27703 * 24 23 22 44 44 H 1.07998 * 119.63356 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0411 -0.7240 -1.2496 5 7 3.5044 -0.8290 -1.1697 6 6 4.2931 -0.3790 -2.1948 7 1 3.9460 0.4208 -2.8322 8 6 5.5387 -0.9509 -2.4146 9 7 5.8278 -2.1215 -1.8868 10 14 6.8047 -0.0591 -3.4593 11 1 7.1171 1.2556 -2.8435 12 1 8.0432 -0.8745 -3.5395 13 1 6.2603 0.1508 -4.8248 14 6 4.1053 -1.4264 0.0305 15 6 3.5709 -0.6948 1.2657 16 6 2.0408 -0.7232 1.2483 17 1 1.6970 -1.7574 1.2351 18 7 1.5265 -0.0531 2.4453 19 6 1.3980 -0.7386 3.5985 20 8 1.7128 -1.9088 3.6468 21 6 0.8684 -0.0495 4.8297 22 6 0.8242 -1.0291 5.9740 23 6 -0.3412 -1.7178 6.2742 24 6 -0.3427 -2.6125 7.3273 25 7 0.7434 -2.8068 8.0498 26 6 1.8679 -2.1663 7.7976 27 6 1.9472 -1.2598 6.7554 28 17 3.4317 -0.4205 6.4309 29 1 -0.3633 0.5125 0.8908 30 1 -0.3633 0.5151 -0.8892 31 1 -0.3633 -1.0277 -0.0015 32 1 1.7633 -0.1581 -2.1389 33 1 1.6051 -1.7218 -1.2979 34 1 6.6983 -2.5209 -2.0401 35 1 5.1896 -1.3240 -0.0141 36 1 3.8399 -2.4820 0.0878 37 1 3.9157 0.3391 1.2539 38 1 3.9337 -1.1889 2.1671 39 1 1.2785 0.8839 2.4078 40 1 1.5223 0.7830 5.0897 41 1 -0.1360 0.3252 4.6327 42 1 -1.2356 -1.5597 5.6898 43 1 -1.2454 -3.1559 7.5644 44 1 2.7373 -2.3520 8.4109 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942840908.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:55 Heat of formation + Delta-G solvation = 5.128556 kcal Electronic energy + Delta-G solvation = -26968.882737 eV Core-core repulsion = 23140.215986 eV Total energy + Delta-G solvation = -3828.666752 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.74050 -39.64286 -37.69875 -36.83437 -34.59049 -34.06787 -32.68540 -31.31817 -31.21197 -30.13190 -28.57578 -25.90836 -25.02354 -23.83906 -23.09415 -21.98094 -21.00396 -20.27779 -19.31035 -17.31391 -17.16396 -16.99602 -16.63337 -16.30959 -15.69875 -14.96223 -14.78619 -14.52921 -14.26544 -13.95907 -13.76273 -13.61445 -13.31846 -13.11470 -12.94317 -12.73542 -12.57650 -12.21645 -12.14828 -11.87335 -11.50560 -11.42528 -11.32587 -11.07169 -10.81575 -10.66957 -10.36596 -10.26067 -10.14283 -10.00160 -9.86074 -9.79447 -9.75554 -9.42217 -9.18460 -8.72016 -8.42782 -6.70061 -5.79282 -3.22190 0.66809 0.80621 1.82328 2.71271 3.18767 3.37672 3.43950 3.44577 3.52651 4.11930 4.14159 4.31217 4.48258 4.61609 4.79150 4.92519 4.99190 5.12361 5.20008 5.28480 5.29023 5.39152 5.47109 5.51270 5.59923 5.77655 5.87624 5.94570 6.07701 6.19955 6.22645 6.24899 6.35395 6.42115 6.59301 6.65605 6.76943 6.91287 6.93918 7.36343 7.55253 7.63553 7.68763 7.78329 8.34290 8.43841 9.19824 9.83292 10.39676 11.29147 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.017942 B = 0.002803 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.245485 B = 9987.179790 C =10851.507025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.115 4.115 3 H 0.071 0.929 4 C 0.155 3.845 5 N -0.592 5.592 6 C -0.256 4.256 7 H 0.065 0.935 8 C 0.003 3.997 9 N -0.901 5.901 10 Si 0.902 3.098 11 H -0.284 1.284 12 H -0.290 1.290 13 H -0.283 1.283 14 C 0.174 3.826 15 C -0.147 4.147 16 C 0.159 3.841 17 H 0.081 0.919 18 N -0.721 5.721 19 C 0.515 3.485 20 O -0.529 6.529 21 C -0.113 4.113 22 C -0.009 4.009 23 C -0.150 4.150 24 C 0.101 3.899 25 N -0.473 5.473 26 C 0.114 3.886 27 C -0.075 4.075 28 Cl -0.047 7.047 29 H 0.046 0.954 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.020 0.980 34 H 0.255 0.745 35 H 0.089 0.911 36 H 0.020 0.980 37 H 0.054 0.946 38 H 0.053 0.947 39 H 0.395 0.605 40 H 0.110 0.890 41 H 0.109 0.891 42 H 0.143 0.857 43 H 0.163 0.837 44 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.698 6.049 17.627 23.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.136 4.136 3 H 0.089 0.911 4 C 0.028 3.972 5 N -0.314 5.314 6 C -0.386 4.386 7 H 0.083 0.917 8 C -0.196 4.196 9 N -0.545 5.545 10 Si 0.732 3.268 11 H -0.211 1.211 12 H -0.216 1.216 13 H -0.209 1.209 14 C 0.048 3.952 15 C -0.187 4.187 16 C 0.055 3.945 17 H 0.099 0.901 18 N -0.371 5.371 19 C 0.300 3.700 20 O -0.405 6.405 21 C -0.153 4.153 22 C -0.018 4.018 23 C -0.170 4.170 24 C -0.055 4.055 25 N -0.182 5.182 26 C -0.044 4.044 27 C -0.104 4.104 28 Cl -0.019 7.019 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.038 0.962 34 H 0.065 0.935 35 H 0.107 0.893 36 H 0.038 0.962 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.228 0.772 40 H 0.128 0.872 41 H 0.127 0.873 42 H 0.161 0.839 43 H 0.180 0.820 44 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -13.190 4.556 18.269 22.990 hybrid contribution 0.764 1.568 -1.296 2.173 sum -12.426 6.124 16.974 21.909 Atomic orbital electron populations 1.21767 0.95839 1.01532 1.00783 1.21977 0.94463 1.00610 0.96529 0.91061 1.20889 0.86030 0.96584 0.93734 1.44091 0.99258 1.71446 1.16632 1.19124 0.98293 1.12428 1.08710 0.91681 1.25051 0.99916 0.95333 0.99260 1.70034 1.21994 1.14530 1.47901 0.86374 0.81108 0.79108 0.80193 1.21058 1.21622 1.20874 1.20747 0.99444 0.93067 0.81980 1.22566 0.93881 1.01480 1.00769 1.21059 0.94573 0.96789 0.82044 0.90067 1.46253 1.66104 1.14191 1.10547 1.20090 0.78607 0.87278 0.84030 1.90756 1.49148 1.16161 1.84428 1.20797 1.04724 0.98146 0.91648 1.19616 0.92177 0.95902 0.94071 1.22033 0.98365 0.97450 0.99109 1.22828 0.96679 0.94846 0.91156 1.67799 0.99199 1.22794 1.28359 1.22757 0.96617 0.90894 0.94102 1.21988 0.89014 0.99927 0.99508 1.98398 1.32162 1.76258 1.95041 0.93514 0.92744 0.92935 0.92400 0.96245 0.93507 0.89266 0.96211 0.92716 0.92807 0.77187 0.87194 0.87263 0.83940 0.81997 0.81833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.03 37.16 0.34 -1.43 16 2 C -0.11 -1.82 2.46 -90.50 -0.22 -2.05 16 3 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 4 C 0.15 3.13 5.80 -3.71 -0.02 3.10 16 5 N -0.59 -14.63 2.99 -172.32 -0.52 -15.15 16 6 C -0.26 -6.94 9.59 -15.06 -0.14 -7.09 16 7 H 0.07 1.72 7.89 -52.48 -0.41 1.30 16 8 C 0.00 0.09 4.91 -17.43 -0.09 0.01 16 9 N -0.90 -26.30 11.19 55.49 0.62 -25.68 16 10 Si 0.90 21.60 29.59 -169.99 -5.03 16.58 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 C 0.17 4.22 5.31 -3.71 -0.02 4.20 16 15 C -0.15 -2.90 5.65 -26.61 -0.15 -3.05 16 16 C 0.16 2.65 1.88 -67.89 -0.13 2.52 16 17 H 0.08 1.56 7.58 -51.93 -0.39 1.17 16 18 N -0.72 -9.26 4.36 -53.77 -0.23 -9.50 16 19 C 0.52 6.94 7.79 -10.98 -0.09 6.85 16 20 O -0.53 -9.54 15.70 5.56 0.09 -9.46 16 21 C -0.11 -1.05 5.42 -29.03 -0.16 -1.21 16 22 C -0.01 -0.09 4.41 -104.28 -0.46 -0.55 16 23 C -0.15 -1.36 9.80 -39.45 -0.39 -1.74 16 24 C 0.10 0.94 11.18 -17.55 -0.20 0.74 16 25 N -0.47 -5.33 10.36 -13.23 -0.14 -5.46 16 26 C 0.11 1.25 10.99 -17.50 -0.19 1.05 16 27 C -0.08 -0.86 6.34 -39.35 -0.25 -1.11 16 28 Cl -0.05 -0.54 27.58 -51.86 -1.43 -1.98 16 29 H 0.05 0.48 7.36 -51.93 -0.38 0.10 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 1.14 7.93 -51.93 -0.41 0.72 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.25 7.22 8.31 -40.82 -0.34 6.89 16 35 H 0.09 2.43 6.04 -51.93 -0.31 2.12 16 36 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.39 3.86 8.31 -40.82 -0.34 3.52 16 40 H 0.11 0.90 7.24 -51.93 -0.38 0.52 16 41 H 0.11 0.66 8.07 -51.93 -0.42 0.24 16 42 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 43 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 44 H 0.16 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 373.53 15.07 5.63 5.63 Total: -1.00 -33.12 373.53 -9.59 -42.70 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -6.41 Total: 2.04 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -2.16 Total: 0.27 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: -0.27 Total: -55.78 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.09 Total: -9.46 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.58 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.43 Total: -1.98 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.12 -9.59 -42.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942840908.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.831 kcal (2) G-P(sol) polarization free energy of solvation -33.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds