Wall clock time and date at job start Tue Mar 31 2020 20:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.52227 * 2 1 4 4 C 1.53196 * 109.48692 * 239.91409 * 2 1 3 5 5 N 1.46925 * 108.76374 * 185.40070 * 4 2 1 6 6 C 1.36938 * 120.62592 * 233.59458 * 5 4 2 7 7 H 1.08006 * 120.00433 * 27.69805 * 6 5 4 8 8 C 1.38813 * 120.00077 * 207.69714 * 6 5 4 9 9 N 1.31627 * 119.99508 * 17.35473 * 8 6 5 10 10 Si 1.86799 * 120.00410 * 197.35922 * 8 6 5 11 11 H 1.48499 * 109.46919 * 59.99949 * 10 8 6 12 12 H 1.48502 * 109.47149 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47051 * 300.00074 * 10 8 6 14 14 C 1.46918 * 118.74313 * 53.61733 * 5 4 2 15 15 C 1.53193 * 108.77353 * 306.39309 * 14 5 4 16 16 C 1.53043 * 109.49574 * 120.08540 * 2 1 3 17 17 H 1.08994 * 109.46420 * 61.31191 * 16 2 1 18 18 N 1.46499 * 109.45965 * 301.33340 * 16 2 1 19 19 C 1.34774 * 119.99688 * 154.97315 * 18 16 2 20 20 O 1.21274 * 120.00480 * 0.28292 * 19 18 16 21 21 C 1.50705 * 119.99919 * 180.02562 * 19 18 16 22 22 C 1.50699 * 109.47370 * 180.02562 * 21 19 18 23 23 C 1.38655 * 120.79429 * 264.72418 * 22 21 19 24 24 C 1.38186 * 119.17759 * 179.72970 * 23 22 21 25 25 N 1.31883 * 120.79300 * 0.55038 * 24 23 22 26 26 C 1.31844 * 121.74035 * 359.72049 * 25 24 23 27 27 C 1.38353 * 120.74548 * 359.97438 * 26 25 24 28 28 Cl 1.73597 * 120.43605 * 179.97438 * 27 26 25 29 29 H 1.08998 * 109.46897 * 299.91340 * 1 2 3 30 30 H 1.08994 * 109.46900 * 59.91769 * 1 2 3 31 31 H 1.08999 * 109.46734 * 179.91640 * 1 2 3 32 32 H 1.09000 * 109.58177 * 65.62103 * 4 2 1 33 33 H 1.09001 * 109.59478 * 305.19060 * 4 2 1 34 34 H 0.97002 * 119.99625 * 180.02562 * 9 8 6 35 35 H 1.09001 * 109.59114 * 186.60768 * 14 5 4 36 36 H 1.09001 * 109.70217 * 66.24271 * 14 5 4 37 37 H 1.08998 * 109.50090 * 294.67725 * 15 14 5 38 38 H 1.09004 * 109.52219 * 174.60288 * 15 14 5 39 39 H 0.97000 * 120.00389 * 334.98045 * 18 16 2 40 40 H 1.09004 * 109.46911 * 300.00081 * 21 19 18 41 41 H 1.08997 * 109.46997 * 60.00095 * 21 19 18 42 42 H 1.08002 * 120.40756 * 359.97189 * 23 22 21 43 43 H 1.07994 * 119.60611 * 180.27703 * 24 23 22 44 44 H 1.07998 * 119.63356 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0411 -0.7240 -1.2496 5 7 3.5044 -0.8290 -1.1697 6 6 4.2931 -0.3790 -2.1948 7 1 3.9460 0.4208 -2.8322 8 6 5.5387 -0.9509 -2.4146 9 7 5.8278 -2.1215 -1.8868 10 14 6.8047 -0.0591 -3.4593 11 1 7.1171 1.2556 -2.8435 12 1 8.0432 -0.8745 -3.5395 13 1 6.2603 0.1508 -4.8248 14 6 4.1053 -1.4264 0.0305 15 6 3.5709 -0.6948 1.2657 16 6 2.0408 -0.7232 1.2483 17 1 1.6970 -1.7574 1.2351 18 7 1.5265 -0.0531 2.4453 19 6 1.3980 -0.7386 3.5985 20 8 1.7128 -1.9088 3.6468 21 6 0.8684 -0.0495 4.8297 22 6 0.8242 -1.0291 5.9740 23 6 -0.3412 -1.7178 6.2742 24 6 -0.3427 -2.6125 7.3273 25 7 0.7434 -2.8068 8.0498 26 6 1.8679 -2.1663 7.7976 27 6 1.9472 -1.2598 6.7554 28 17 3.4317 -0.4205 6.4309 29 1 -0.3633 0.5125 0.8908 30 1 -0.3633 0.5151 -0.8892 31 1 -0.3633 -1.0277 -0.0015 32 1 1.7633 -0.1581 -2.1389 33 1 1.6051 -1.7218 -1.2979 34 1 6.6983 -2.5209 -2.0401 35 1 5.1896 -1.3240 -0.0141 36 1 3.8399 -2.4820 0.0878 37 1 3.9157 0.3391 1.2539 38 1 3.9337 -1.1889 2.1671 39 1 1.2785 0.8839 2.4078 40 1 1.5223 0.7830 5.0897 41 1 -0.1360 0.3252 4.6327 42 1 -1.2356 -1.5597 5.6898 43 1 -1.2454 -3.1559 7.5644 44 1 2.7373 -2.3520 8.4109 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942840908.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:54 Heat of formation + Delta-G solvation = -16.023559 kcal Electronic energy + Delta-G solvation = -26969.799962 eV Core-core repulsion = 23140.215986 eV Total energy + Delta-G solvation = -3829.583976 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.58892 -40.76205 -39.15841 -37.67270 -36.20134 -34.90189 -34.16484 -32.92870 -32.04369 -31.75395 -29.56169 -27.40995 -26.73009 -24.57716 -24.31161 -23.25652 -22.63989 -21.45926 -20.77667 -18.79058 -18.10511 -17.95013 -17.86986 -17.24465 -16.87456 -16.60930 -16.03252 -15.61816 -15.57112 -15.29066 -14.95649 -14.87338 -14.59364 -14.55128 -14.26790 -13.84534 -13.61561 -13.48569 -13.06464 -13.03319 -12.99777 -12.72213 -12.61931 -12.56495 -12.32908 -12.27460 -12.08645 -12.04156 -11.66389 -11.56698 -11.28692 -11.05641 -10.61577 -10.57032 -10.50466 -9.97253 -9.94858 -8.72903 -7.88684 -5.34902 -0.07815 0.05607 1.00886 1.46260 1.49080 1.55810 1.67652 2.19884 2.50405 2.70663 3.26899 3.37062 3.46287 3.62007 3.65169 3.76033 3.91782 3.94776 4.05195 4.18288 4.22878 4.38453 4.40981 4.54298 4.60442 4.63653 4.72824 4.74458 4.81368 4.86925 4.92166 5.02977 5.07334 5.11959 5.17062 5.31486 5.39411 5.51921 5.52676 5.58437 5.62497 5.68738 6.36400 6.62984 6.81744 7.11554 7.33210 7.82910 8.35474 9.18018 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.017942 B = 0.002803 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.245485 B = 9987.179790 C =10851.507025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.100 4.100 3 H 0.080 0.920 4 C 0.148 3.852 5 N -0.609 5.609 6 C -0.263 4.263 7 H 0.074 0.926 8 C -0.054 4.054 9 N -0.939 5.939 10 Si 0.969 3.031 11 H -0.276 1.276 12 H -0.298 1.298 13 H -0.272 1.272 14 C 0.184 3.816 15 C -0.131 4.131 16 C 0.173 3.827 17 H 0.054 0.946 18 N -0.707 5.707 19 C 0.515 3.485 20 O -0.579 6.579 21 C -0.103 4.103 22 C -0.025 4.025 23 C -0.146 4.146 24 C 0.095 3.905 25 N -0.495 5.495 26 C 0.100 3.900 27 C -0.091 4.091 28 Cl -0.058 7.058 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.044 0.956 32 H 0.065 0.935 33 H 0.007 0.993 34 H 0.249 0.751 35 H 0.053 0.947 36 H -0.015 1.015 37 H 0.060 0.940 38 H 0.042 0.958 39 H 0.416 0.584 40 H 0.124 0.876 41 H 0.154 0.846 42 H 0.175 0.825 43 H 0.192 0.808 44 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.399 8.596 18.053 25.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.120 4.120 3 H 0.099 0.901 4 C 0.023 3.977 5 N -0.332 5.332 6 C -0.393 4.393 7 H 0.092 0.908 8 C -0.249 4.249 9 N -0.585 5.585 10 Si 0.797 3.203 11 H -0.202 1.202 12 H -0.224 1.224 13 H -0.198 1.198 14 C 0.057 3.943 15 C -0.171 4.171 16 C 0.068 3.932 17 H 0.072 0.928 18 N -0.358 5.358 19 C 0.302 3.698 20 O -0.458 6.458 21 C -0.142 4.142 22 C -0.034 4.034 23 C -0.165 4.165 24 C -0.061 4.061 25 N -0.204 5.204 26 C -0.057 4.057 27 C -0.120 4.120 28 Cl -0.029 7.029 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.025 0.975 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.003 0.997 37 H 0.079 0.921 38 H 0.061 0.939 39 H 0.253 0.747 40 H 0.142 0.858 41 H 0.171 0.829 42 H 0.192 0.808 43 H 0.209 0.791 44 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -15.941 7.166 18.707 25.601 hybrid contribution 1.536 0.700 -1.414 2.202 sum -14.404 7.867 17.294 23.842 Atomic orbital electron populations 1.21712 0.92443 1.01828 1.03079 1.21762 0.97067 0.99823 0.93384 0.90127 1.21104 0.83384 0.96705 0.96557 1.44338 1.01203 1.71382 1.16269 1.19536 0.98744 1.12188 1.08786 0.90831 1.25870 1.01968 0.96006 1.01093 1.70215 1.22002 1.16273 1.49972 0.85316 0.78186 0.77835 0.78979 1.20217 1.22437 1.19768 1.20435 0.97575 0.91941 0.84338 1.22302 0.96504 1.00615 0.97667 1.20584 0.92109 0.96169 0.84380 0.92783 1.45942 1.65567 1.15065 1.09243 1.20822 0.77376 0.86707 0.84900 1.90751 1.51168 1.18654 1.85204 1.20823 1.07220 0.97521 0.88609 1.19921 0.92418 0.96615 0.94423 1.22421 0.98930 0.96319 0.98876 1.23413 0.97045 0.94838 0.90818 1.67828 0.99856 1.23350 1.29369 1.22953 0.97149 0.91115 0.94510 1.22156 0.89100 1.00499 1.00288 1.98387 1.32939 1.76453 1.95120 0.90377 0.91322 0.93667 0.91691 0.97461 0.94215 0.92842 0.99667 0.92110 0.93891 0.74712 0.85830 0.82867 0.80764 0.79073 0.81032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.82 9.03 71.98 0.65 -2.17 16 2 C -0.10 -2.95 2.46 -10.71 -0.03 -2.98 16 3 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 4 C 0.15 5.93 5.80 86.36 0.50 6.43 16 5 N -0.61 -30.69 2.99 -699.10 -2.09 -32.78 16 6 C -0.26 -14.37 9.59 84.03 0.81 -13.56 16 7 H 0.07 3.83 7.89 -2.91 -0.02 3.81 16 8 C -0.05 -3.07 4.91 84.86 0.42 -2.65 16 9 N -0.94 -57.18 11.19 21.65 0.24 -56.93 16 10 Si 0.97 45.05 29.59 68.60 2.03 47.08 16 11 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 12 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 13 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 14 C 0.18 9.37 5.31 86.36 0.46 9.83 16 15 C -0.13 -5.24 5.65 30.67 0.17 -5.07 16 16 C 0.17 5.60 1.88 45.02 0.08 5.69 16 17 H 0.05 2.10 7.58 -2.39 -0.02 2.08 16 18 N -0.71 -16.18 4.36 -442.41 -1.93 -18.11 16 19 C 0.51 12.69 7.79 87.66 0.68 13.37 16 20 O -0.58 -20.57 15.70 -3.01 -0.05 -20.62 16 21 C -0.10 -1.53 5.42 29.10 0.16 -1.37 16 22 C -0.02 -0.47 4.41 -19.64 -0.09 -0.55 16 23 C -0.15 -2.20 9.80 22.36 0.22 -1.99 16 24 C 0.10 1.56 11.18 84.67 0.95 2.50 16 25 N -0.49 -10.71 10.36 -195.75 -2.03 -12.73 16 26 C 0.10 2.16 10.99 84.72 0.93 3.09 16 27 C -0.09 -2.01 6.34 22.42 0.14 -1.87 16 28 Cl -0.06 -1.31 27.58 -2.72 -0.08 -1.38 16 29 H 0.08 1.20 7.36 -2.39 -0.02 1.18 16 30 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.06 2.47 7.93 -2.39 -0.02 2.45 16 33 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 34 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 35 H 0.05 3.09 6.04 -2.39 -0.01 3.07 16 36 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 37 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 39 H 0.42 6.26 8.31 -92.71 -0.77 5.49 16 40 H 0.12 1.57 7.24 -2.39 -0.02 1.55 16 41 H 0.15 0.95 8.07 -2.39 -0.02 0.94 16 42 H 0.17 1.42 8.06 -2.91 -0.02 1.39 16 43 H 0.19 1.78 8.06 -2.91 -0.02 1.76 16 44 H 0.17 3.12 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -76.65 373.53 2.40 -74.26 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: 0.24 Total: 12.51 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: 6.06 Total: 8.71 kcal Atomic # 7 Polarization: -114.75 SS G_CDS: -5.81 Total: -120.56 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: -0.05 Total: -20.62 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -0.08 Total: -1.38 kcal Total: -76.65 2.40 -74.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942840908.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.232 kcal (2) G-P(sol) polarization free energy of solvation -76.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds