Wall clock time and date at job start Tue Mar 31 2020 20:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.52235 * 2 1 4 4 C 1.53193 * 109.49548 * 239.92538 * 2 1 3 5 5 N 1.46926 * 108.77441 * 185.41017 * 4 2 1 6 6 C 1.36940 * 120.63342 * 233.58698 * 5 4 2 7 7 H 1.07996 * 120.00611 * 151.84166 * 6 5 4 8 8 C 1.38814 * 119.99647 * 331.84222 * 6 5 4 9 9 N 1.31613 * 120.00261 * 343.08217 * 8 6 5 10 10 Si 1.86804 * 119.99792 * 163.07950 * 8 6 5 11 11 H 1.48492 * 109.47162 * 60.00081 * 10 8 6 12 12 H 1.48498 * 109.46674 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47156 * 299.99898 * 10 8 6 14 14 C 1.46923 * 118.74170 * 53.60493 * 5 4 2 15 15 C 1.53199 * 108.76736 * 306.38726 * 14 5 4 16 16 C 1.53036 * 109.50240 * 120.08514 * 2 1 3 17 17 H 1.09000 * 109.45761 * 301.33420 * 16 2 1 18 18 N 1.46500 * 109.45933 * 61.30930 * 16 2 1 19 19 C 1.34774 * 119.99740 * 205.02852 * 18 16 2 20 20 O 1.21281 * 120.00497 * 0.02562 * 19 18 16 21 21 C 1.50703 * 120.00103 * 180.02562 * 19 18 16 22 22 C 1.50689 * 109.47403 * 180.02562 * 21 19 18 23 23 C 1.38655 * 120.79885 * 100.00189 * 22 21 19 24 24 C 1.38184 * 119.18137 * 179.97438 * 23 22 21 25 25 N 1.31887 * 120.79337 * 359.97438 * 24 23 22 26 26 C 1.31844 * 121.73660 * 0.02562 * 25 24 23 27 27 C 1.38351 * 120.74535 * 359.73872 * 26 25 24 28 28 Cl 1.73596 * 120.42946 * 180.29005 * 27 26 25 29 29 H 1.08998 * 109.47113 * 299.91007 * 1 2 3 30 30 H 1.08999 * 109.47732 * 59.91534 * 1 2 3 31 31 H 1.09004 * 109.46841 * 179.91572 * 1 2 3 32 32 H 1.08997 * 109.58564 * 305.19342 * 4 2 1 33 33 H 1.09000 * 109.59111 * 65.48350 * 4 2 1 34 34 H 0.97004 * 120.00436 * 179.97438 * 9 8 6 35 35 H 1.09001 * 109.58565 * 66.17731 * 14 5 4 36 36 H 1.08997 * 109.58946 * 186.46206 * 14 5 4 37 37 H 1.08996 * 109.50333 * 294.69821 * 15 14 5 38 38 H 1.08997 * 109.49007 * 174.59464 * 15 14 5 39 39 H 0.96996 * 119.99918 * 25.03087 * 18 16 2 40 40 H 1.09000 * 109.47037 * 300.00280 * 21 19 18 41 41 H 1.08998 * 109.46779 * 59.99857 * 21 19 18 42 42 H 1.08004 * 120.40896 * 359.97438 * 23 22 21 43 43 H 1.07999 * 119.60226 * 179.97438 * 24 23 22 44 44 H 1.08002 * 119.62325 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0412 -0.7237 -1.2497 5 7 3.5045 -0.8290 -1.1698 6 6 4.2935 -0.3790 -2.1946 7 1 5.2960 -0.0323 -1.9922 8 6 3.8045 -0.3686 -3.4938 9 7 2.7412 -1.0801 -3.8025 10 14 4.6558 0.6554 -4.8039 11 1 6.0610 0.1992 -4.9531 12 1 3.9432 0.4962 -6.0969 13 1 4.6394 2.0851 -4.4029 14 6 4.1053 -1.4265 0.0305 15 6 3.5709 -0.6947 1.2657 16 6 2.0409 -0.7231 1.2482 17 1 1.6583 -0.2246 2.1388 18 7 1.5787 -2.1132 1.2304 19 6 1.4502 -2.7954 2.3856 20 8 1.7166 -2.2584 3.4399 21 6 0.9753 -4.2255 2.3674 22 6 0.9184 -4.7540 3.7774 23 6 -0.2848 -4.8182 4.4635 24 6 -0.2985 -5.3091 5.7551 25 7 0.8145 -5.7143 6.3353 26 6 1.9767 -5.6683 5.7145 27 6 2.0678 -5.1936 4.4182 28 17 3.6011 -5.1437 3.6058 29 1 -0.3633 0.5124 0.8908 30 1 -0.3634 0.5151 -0.8892 31 1 -0.3633 -1.0277 -0.0015 32 1 1.6052 -1.7215 -1.2981 33 1 1.7615 -0.1591 -2.1391 34 1 2.3993 -1.0726 -4.7102 35 1 3.8376 -2.4817 0.0865 36 1 5.1897 -1.3266 -0.0153 37 1 3.9157 0.3393 1.2536 38 1 3.9337 -1.1892 2.1667 39 1 1.3653 -2.5426 0.3873 40 1 -0.0183 -4.2728 1.9217 41 1 1.6662 -4.8302 1.7799 42 1 -1.2000 -4.4885 3.9943 43 1 -1.2318 -5.3618 6.2960 44 1 2.8669 -6.0094 6.2220 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942840914.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:05 Heat of formation + Delta-G solvation = 6.269756 kcal Electronic energy + Delta-G solvation = -27424.048750 eV Core-core repulsion = 23595.431485 eV Total energy + Delta-G solvation = -3828.617265 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.69025 -39.69650 -37.69189 -36.73913 -34.29093 -33.97297 -32.26043 -31.84531 -31.26014 -29.85476 -28.44364 -25.94663 -25.22551 -23.78117 -23.11705 -22.04322 -21.04910 -20.42392 -18.60978 -17.34589 -17.12229 -16.90182 -16.75840 -16.19269 -15.28845 -14.94617 -14.81046 -14.48768 -14.23032 -13.94424 -13.85466 -13.51336 -13.31744 -13.18096 -12.96474 -12.71841 -12.51671 -12.13510 -12.07308 -11.80421 -11.48585 -11.34143 -11.24758 -11.06728 -10.96318 -10.72824 -10.43525 -10.17906 -10.06123 -9.99938 -9.81934 -9.80529 -9.52223 -9.44801 -9.12447 -8.66855 -8.50295 -6.72466 -5.85564 -3.27530 0.72331 0.86488 1.91253 2.81076 3.28749 3.34758 3.40440 3.42203 3.61522 4.18027 4.21946 4.38412 4.44843 4.67858 4.90095 5.02596 5.09429 5.25630 5.27881 5.32161 5.34406 5.40387 5.54106 5.59112 5.63595 5.81338 5.85165 6.03937 6.11520 6.17188 6.25065 6.30688 6.42542 6.51076 6.52918 6.61492 6.76281 6.89506 6.98576 7.23702 7.53572 7.59417 7.73866 7.80110 8.38870 8.44322 9.15171 9.78183 10.34662 11.22869 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.021109 B = 0.002970 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.135505 B = 9425.426810 C =10026.194964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 H 0.078 0.922 4 C 0.180 3.820 5 N -0.592 5.592 6 C -0.253 4.253 7 H 0.065 0.935 8 C 0.004 3.996 9 N -0.904 5.904 10 Si 0.902 3.098 11 H -0.283 1.283 12 H -0.291 1.291 13 H -0.284 1.284 14 C 0.149 3.851 15 C -0.145 4.145 16 C 0.162 3.838 17 H 0.072 0.928 18 N -0.709 5.709 19 C 0.519 3.481 20 O -0.540 6.540 21 C -0.115 4.115 22 C -0.006 4.006 23 C -0.151 4.151 24 C 0.099 3.901 25 N -0.474 5.474 26 C 0.112 3.888 27 C -0.073 4.073 28 Cl -0.045 7.045 29 H 0.043 0.957 30 H 0.055 0.945 31 H 0.049 0.951 32 H 0.015 0.985 33 H 0.090 0.910 34 H 0.254 0.746 35 H 0.016 0.984 36 H 0.051 0.949 37 H 0.066 0.934 38 H 0.056 0.944 39 H 0.403 0.597 40 H 0.110 0.890 41 H 0.112 0.888 42 H 0.143 0.857 43 H 0.162 0.838 44 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.415 -8.024 14.045 17.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.149 4.149 3 H 0.096 0.904 4 C 0.053 3.947 5 N -0.314 5.314 6 C -0.382 4.382 7 H 0.082 0.918 8 C -0.195 4.195 9 N -0.548 5.548 10 Si 0.732 3.268 11 H -0.209 1.209 12 H -0.216 1.216 13 H -0.210 1.210 14 C 0.023 3.977 15 C -0.185 4.185 16 C 0.058 3.942 17 H 0.090 0.910 18 N -0.360 5.360 19 C 0.303 3.697 20 O -0.418 6.418 21 C -0.154 4.154 22 C -0.015 4.015 23 C -0.171 4.171 24 C -0.057 4.057 25 N -0.183 5.183 26 C -0.045 4.045 27 C -0.102 4.102 28 Cl -0.016 7.016 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.033 0.967 33 H 0.108 0.892 34 H 0.064 0.936 35 H 0.034 0.966 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.240 0.760 40 H 0.128 0.872 41 H 0.130 0.870 42 H 0.161 0.839 43 H 0.179 0.821 44 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -7.177 -7.964 15.382 18.749 hybrid contribution 0.482 0.652 -2.155 2.302 sum -6.695 -7.312 13.227 16.530 Atomic orbital electron populations 1.21712 0.95889 1.01143 1.00850 1.22141 0.94713 1.00795 0.97260 0.90414 1.20769 0.83202 0.96485 0.94210 1.44042 1.01604 1.69522 1.16231 1.19144 0.97988 1.35359 0.85727 0.91775 1.25015 0.98523 0.98973 0.96965 1.69994 1.25679 1.40232 1.18893 0.86377 0.78984 0.80528 0.80936 1.20903 1.21637 1.21032 1.20843 0.96468 0.94050 0.86366 1.22371 0.95122 1.01652 0.99384 1.20876 0.94288 0.80592 0.98446 0.90994 1.46122 1.66903 1.14380 1.08640 1.20044 0.78017 0.87237 0.84365 1.90703 1.50461 1.69994 1.30635 1.20788 1.05213 0.95469 0.93976 1.19643 0.91989 0.94303 0.95603 1.22048 0.98010 1.00973 0.96096 1.22808 0.96840 0.93825 0.92227 1.67789 0.98430 1.15582 1.36493 1.22738 0.96579 0.95486 0.89738 1.21988 0.88311 1.04319 0.95608 1.98405 1.27645 1.96903 1.78656 0.93748 0.92619 0.93224 0.96709 0.89189 0.93587 0.96575 0.93027 0.91533 0.92569 0.76028 0.87217 0.86972 0.83927 0.82076 0.81922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.05 37.16 0.34 -1.68 16 2 C -0.13 -2.22 2.67 -90.50 -0.24 -2.47 16 3 H 0.08 1.43 8.14 -51.92 -0.42 1.00 16 4 C 0.18 3.85 4.29 -3.71 -0.02 3.83 16 5 N -0.59 -13.93 2.99 -172.32 -0.52 -14.45 16 6 C -0.25 -6.68 9.58 -15.06 -0.14 -6.82 16 7 H 0.06 1.69 7.88 -52.49 -0.41 1.28 16 8 C 0.00 0.10 4.92 -17.43 -0.09 0.02 16 9 N -0.90 -24.88 11.19 55.49 0.62 -24.26 16 10 Si 0.90 21.12 29.59 -169.99 -5.03 16.09 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 14 C 0.15 3.05 6.26 -3.71 -0.02 3.02 16 15 C -0.15 -2.60 5.77 -26.61 -0.15 -2.75 16 16 C 0.16 2.68 2.21 -67.89 -0.15 2.53 16 17 H 0.07 1.22 7.58 -51.93 -0.39 0.83 16 18 N -0.71 -10.47 3.60 -53.77 -0.19 -10.66 16 19 C 0.52 7.44 7.68 -10.99 -0.08 7.36 16 20 O -0.54 -9.51 15.63 5.56 0.09 -9.42 16 21 C -0.11 -1.24 5.35 -29.04 -0.16 -1.40 16 22 C -0.01 -0.07 4.45 -104.29 -0.46 -0.54 16 23 C -0.15 -1.44 9.78 -39.45 -0.39 -1.83 16 24 C 0.10 0.95 11.18 -17.55 -0.20 0.75 16 25 N -0.47 -5.44 10.36 -13.22 -0.14 -5.58 16 26 C 0.11 1.26 10.99 -17.50 -0.19 1.07 16 27 C -0.07 -0.88 6.26 -39.36 -0.25 -1.13 16 28 Cl -0.04 -0.56 27.60 -51.86 -1.43 -1.99 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.05 0.68 7.54 -51.93 -0.39 0.29 16 32 H 0.02 0.32 6.64 -51.93 -0.34 -0.02 16 33 H 0.09 2.23 6.07 -51.93 -0.31 1.91 16 34 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 35 H 0.02 0.33 7.74 -51.93 -0.40 -0.07 16 36 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 37 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.40 5.82 6.73 -40.82 -0.27 5.55 16 40 H 0.11 0.88 8.04 -51.93 -0.42 0.46 16 41 H 0.11 1.16 7.45 -51.93 -0.39 0.77 16 42 H 0.14 0.98 8.06 -52.48 -0.42 0.56 16 43 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16 44 H 0.16 1.48 8.06 -52.49 -0.42 1.05 16 LS Contribution 369.52 15.07 5.57 5.57 Total: -1.00 -30.81 369.52 -9.50 -40.31 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -6.27 Total: 4.42 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -2.20 Total: -0.03 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: -0.22 Total: -54.94 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.09 Total: -9.42 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.09 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.43 Total: -1.99 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.81 -9.50 -40.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942840914.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.579 kcal (2) G-P(sol) polarization free energy of solvation -30.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds