Wall clock time and date at job start Tue Mar 31 2020 20:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.52235 * 2 1 4 4 C 1.53193 * 109.49548 * 239.92538 * 2 1 3 5 5 N 1.46926 * 108.77441 * 185.41017 * 4 2 1 6 6 C 1.36940 * 120.63342 * 233.58698 * 5 4 2 7 7 H 1.07996 * 120.00611 * 151.84166 * 6 5 4 8 8 C 1.38814 * 119.99647 * 331.84222 * 6 5 4 9 9 N 1.31613 * 120.00261 * 343.08217 * 8 6 5 10 10 Si 1.86804 * 119.99792 * 163.07950 * 8 6 5 11 11 H 1.48492 * 109.47162 * 60.00081 * 10 8 6 12 12 H 1.48498 * 109.46674 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47156 * 299.99898 * 10 8 6 14 14 C 1.46923 * 118.74170 * 53.60493 * 5 4 2 15 15 C 1.53199 * 108.76736 * 306.38726 * 14 5 4 16 16 C 1.53036 * 109.50240 * 120.08514 * 2 1 3 17 17 H 1.09000 * 109.45761 * 301.33420 * 16 2 1 18 18 N 1.46500 * 109.45933 * 61.30930 * 16 2 1 19 19 C 1.34774 * 119.99740 * 205.02852 * 18 16 2 20 20 O 1.21281 * 120.00497 * 0.02562 * 19 18 16 21 21 C 1.50703 * 120.00103 * 180.02562 * 19 18 16 22 22 C 1.50689 * 109.47403 * 180.02562 * 21 19 18 23 23 C 1.38655 * 120.79885 * 100.00189 * 22 21 19 24 24 C 1.38184 * 119.18137 * 179.97438 * 23 22 21 25 25 N 1.31887 * 120.79337 * 359.97438 * 24 23 22 26 26 C 1.31844 * 121.73660 * 0.02562 * 25 24 23 27 27 C 1.38351 * 120.74535 * 359.73872 * 26 25 24 28 28 Cl 1.73596 * 120.42946 * 180.29005 * 27 26 25 29 29 H 1.08998 * 109.47113 * 299.91007 * 1 2 3 30 30 H 1.08999 * 109.47732 * 59.91534 * 1 2 3 31 31 H 1.09004 * 109.46841 * 179.91572 * 1 2 3 32 32 H 1.08997 * 109.58564 * 305.19342 * 4 2 1 33 33 H 1.09000 * 109.59111 * 65.48350 * 4 2 1 34 34 H 0.97004 * 120.00436 * 179.97438 * 9 8 6 35 35 H 1.09001 * 109.58565 * 66.17731 * 14 5 4 36 36 H 1.08997 * 109.58946 * 186.46206 * 14 5 4 37 37 H 1.08996 * 109.50333 * 294.69821 * 15 14 5 38 38 H 1.08997 * 109.49007 * 174.59464 * 15 14 5 39 39 H 0.96996 * 119.99918 * 25.03087 * 18 16 2 40 40 H 1.09000 * 109.47037 * 300.00280 * 21 19 18 41 41 H 1.08998 * 109.46779 * 59.99857 * 21 19 18 42 42 H 1.08004 * 120.40896 * 359.97438 * 23 22 21 43 43 H 1.07999 * 119.60226 * 179.97438 * 24 23 22 44 44 H 1.08002 * 119.62325 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0412 -0.7237 -1.2497 5 7 3.5045 -0.8290 -1.1698 6 6 4.2935 -0.3790 -2.1946 7 1 5.2960 -0.0323 -1.9922 8 6 3.8045 -0.3686 -3.4938 9 7 2.7412 -1.0801 -3.8025 10 14 4.6558 0.6554 -4.8039 11 1 6.0610 0.1992 -4.9531 12 1 3.9432 0.4962 -6.0969 13 1 4.6394 2.0851 -4.4029 14 6 4.1053 -1.4265 0.0305 15 6 3.5709 -0.6947 1.2657 16 6 2.0409 -0.7231 1.2482 17 1 1.6583 -0.2246 2.1388 18 7 1.5787 -2.1132 1.2304 19 6 1.4502 -2.7954 2.3856 20 8 1.7166 -2.2584 3.4399 21 6 0.9753 -4.2255 2.3674 22 6 0.9184 -4.7540 3.7774 23 6 -0.2848 -4.8182 4.4635 24 6 -0.2985 -5.3091 5.7551 25 7 0.8145 -5.7143 6.3353 26 6 1.9767 -5.6683 5.7145 27 6 2.0678 -5.1936 4.4182 28 17 3.6011 -5.1437 3.6058 29 1 -0.3633 0.5124 0.8908 30 1 -0.3634 0.5151 -0.8892 31 1 -0.3633 -1.0277 -0.0015 32 1 1.6052 -1.7215 -1.2981 33 1 1.7615 -0.1591 -2.1391 34 1 2.3993 -1.0726 -4.7102 35 1 3.8376 -2.4817 0.0865 36 1 5.1897 -1.3266 -0.0153 37 1 3.9157 0.3393 1.2536 38 1 3.9337 -1.1892 2.1667 39 1 1.3653 -2.5426 0.3873 40 1 -0.0183 -4.2728 1.9217 41 1 1.6662 -4.8302 1.7799 42 1 -1.2000 -4.4885 3.9943 43 1 -1.2318 -5.3618 6.2960 44 1 2.8669 -6.0094 6.2220 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942840914.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:03 Heat of formation + Delta-G solvation = -11.291805 kcal Electronic energy + Delta-G solvation = -27424.810277 eV Core-core repulsion = 23595.431485 eV Total energy + Delta-G solvation = -3829.378792 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.60999 -40.85255 -39.09702 -37.63357 -35.92022 -34.87620 -33.67356 -33.51356 -32.02313 -31.44387 -29.46753 -27.50079 -26.90770 -24.55192 -24.25523 -23.47774 -22.57946 -21.59358 -20.08330 -18.78524 -18.26385 -17.93073 -17.78842 -17.00801 -16.83076 -16.45794 -16.07626 -15.73312 -15.43726 -15.30150 -14.93734 -14.82580 -14.66062 -14.62260 -14.26095 -13.80407 -13.56022 -13.49277 -13.06934 -13.01033 -12.91964 -12.77041 -12.63194 -12.51913 -12.45332 -12.24739 -12.20570 -11.79572 -11.67909 -11.44780 -11.11904 -11.06166 -10.60403 -10.53267 -10.48930 -9.94355 -9.92317 -8.64213 -7.86791 -5.30709 -0.05811 0.06962 1.04768 1.47564 1.49479 1.55662 1.69854 2.26508 2.51751 2.72748 3.27899 3.39019 3.47481 3.66440 3.67488 3.80231 3.93179 3.98201 4.07697 4.21140 4.23930 4.35531 4.40685 4.55447 4.59478 4.65195 4.69622 4.75579 4.80594 4.88892 4.98247 5.04058 5.09279 5.11257 5.18387 5.32293 5.37138 5.53464 5.53565 5.64249 5.67315 5.79280 6.40897 6.62436 6.82806 7.17458 7.29677 7.87280 8.38341 9.18472 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.021109 B = 0.002970 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.135505 B = 9425.426810 C =10026.194964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.116 4.116 3 H 0.066 0.934 4 C 0.189 3.811 5 N -0.608 5.608 6 C -0.266 4.266 7 H 0.058 0.942 8 C -0.041 4.041 9 N -0.926 5.926 10 Si 0.960 3.040 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.281 1.281 14 C 0.152 3.848 15 C -0.134 4.134 16 C 0.171 3.829 17 H 0.076 0.924 18 N -0.707 5.707 19 C 0.521 3.479 20 O -0.572 6.572 21 C -0.109 4.109 22 C -0.022 4.022 23 C -0.147 4.147 24 C 0.097 3.903 25 N -0.493 5.493 26 C 0.102 3.898 27 C -0.089 4.089 28 Cl -0.059 7.059 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.012 0.988 33 H 0.055 0.945 34 H 0.251 0.749 35 H 0.017 0.983 36 H 0.042 0.958 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.406 0.594 40 H 0.145 0.855 41 H 0.116 0.884 42 H 0.174 0.826 43 H 0.194 0.806 44 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.063 -8.216 14.828 19.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.137 4.137 3 H 0.084 0.916 4 C 0.063 3.937 5 N -0.331 5.331 6 C -0.396 4.396 7 H 0.076 0.924 8 C -0.237 4.237 9 N -0.571 5.571 10 Si 0.789 3.211 11 H -0.206 1.206 12 H -0.218 1.218 13 H -0.207 1.207 14 C 0.026 3.974 15 C -0.174 4.174 16 C 0.066 3.934 17 H 0.094 0.906 18 N -0.358 5.358 19 C 0.308 3.692 20 O -0.452 6.452 21 C -0.148 4.148 22 C -0.031 4.031 23 C -0.167 4.167 24 C -0.059 4.059 25 N -0.202 5.202 26 C -0.055 4.055 27 C -0.118 4.118 28 Cl -0.030 7.030 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.030 0.970 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.035 0.965 36 H 0.060 0.940 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.243 0.757 40 H 0.162 0.838 41 H 0.134 0.866 42 H 0.191 0.809 43 H 0.211 0.789 44 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -8.824 -8.168 16.181 20.159 hybrid contribution 0.989 0.680 -2.334 2.624 sum -7.835 -7.488 13.847 17.584 Atomic orbital electron populations 1.21647 0.93350 1.02208 1.01640 1.21936 0.96733 0.99540 0.95464 0.91562 1.20605 0.82193 0.96143 0.94718 1.44265 1.02400 1.69975 1.16427 1.19384 0.98230 1.35226 0.86783 0.92395 1.25640 0.99421 1.00070 0.98599 1.70114 1.26779 1.41320 1.18911 0.85464 0.78021 0.79138 0.78526 1.20613 1.21802 1.20740 1.20857 0.95935 0.94232 0.86334 1.22228 0.96326 1.00963 0.97891 1.20659 0.93069 0.81769 0.97889 0.90630 1.46061 1.66925 1.13691 1.09155 1.20571 0.76926 0.88307 0.83385 1.90693 1.51777 1.71029 1.31665 1.20804 1.07072 0.92630 0.94284 1.19862 0.92515 0.94783 0.95976 1.22417 0.98434 0.99865 0.95949 1.23408 0.97397 0.92543 0.92563 1.67839 0.99002 1.16320 1.37079 1.22946 0.97213 0.95625 0.89731 1.22144 0.88119 1.05480 0.96075 1.98394 1.28658 1.97052 1.78903 0.91924 0.92849 0.92035 0.97037 0.92649 0.94007 0.96468 0.93978 0.91911 0.92365 0.75675 0.83757 0.86632 0.80869 0.78912 0.80908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.54 9.05 71.98 0.65 -2.89 16 2 C -0.12 -3.91 2.67 -10.72 -0.03 -3.94 16 3 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 4 C 0.19 8.11 4.29 86.36 0.37 8.48 16 5 N -0.61 -28.86 2.99 -699.09 -2.09 -30.95 16 6 C -0.27 -14.23 9.58 84.03 0.81 -13.43 16 7 H 0.06 3.10 7.88 -2.91 -0.02 3.08 16 8 C -0.04 -2.21 4.92 84.86 0.42 -1.79 16 9 N -0.93 -51.55 11.19 21.65 0.24 -51.30 16 10 Si 0.96 43.72 29.59 68.60 2.03 45.75 16 11 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 12 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 13 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 14 C 0.15 6.22 6.26 86.37 0.54 6.76 16 15 C -0.13 -4.72 5.77 30.67 0.18 -4.54 16 16 C 0.17 5.43 2.21 45.02 0.10 5.53 16 17 H 0.08 2.42 7.58 -2.39 -0.02 2.41 16 18 N -0.71 -19.64 3.60 -442.41 -1.59 -21.23 16 19 C 0.52 13.93 7.68 87.66 0.67 14.60 16 20 O -0.57 -19.22 15.63 -3.03 -0.05 -19.27 16 21 C -0.11 -2.08 5.35 29.10 0.16 -1.93 16 22 C -0.02 -0.46 4.45 -19.65 -0.09 -0.55 16 23 C -0.15 -2.34 9.78 22.36 0.22 -2.12 16 24 C 0.10 1.59 11.18 84.67 0.95 2.53 16 25 N -0.49 -10.54 10.36 -195.75 -2.03 -12.57 16 26 C 0.10 2.21 10.99 84.72 0.93 3.14 16 27 C -0.09 -2.06 6.26 22.42 0.14 -1.91 16 28 Cl -0.06 -1.44 27.60 -2.72 -0.08 -1.52 16 29 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.06 1.52 7.54 -2.39 -0.02 1.50 16 32 H 0.01 0.50 6.64 -2.39 -0.02 0.49 16 33 H 0.06 2.78 6.07 -2.39 -0.01 2.77 16 34 H 0.25 13.62 8.31 -92.71 -0.77 12.85 16 35 H 0.02 0.71 7.74 -2.39 -0.02 0.69 16 36 H 0.04 1.77 7.93 -2.39 -0.02 1.75 16 37 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.41 11.01 6.73 -92.71 -0.62 10.39 16 40 H 0.14 1.73 8.04 -2.39 -0.02 1.72 16 41 H 0.12 2.17 7.45 -2.39 -0.02 2.16 16 42 H 0.17 1.60 8.06 -2.91 -0.02 1.57 16 43 H 0.19 1.73 8.06 -2.91 -0.02 1.71 16 44 H 0.17 3.11 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -66.56 369.52 2.84 -63.72 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: 0.39 Total: 19.42 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: 6.01 Total: 7.95 kcal Atomic # 7 Polarization: -110.58 SS G_CDS: -5.47 Total: -116.05 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -0.05 Total: -19.27 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 17 Polarization: -1.44 SS G_CDS: -0.08 Total: -1.52 kcal Total: -66.56 2.84 -63.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942840914.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.424 kcal (2) G-P(sol) polarization free energy of solvation -66.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds