Wall clock time and date at job start Tue Mar 31 2020 20:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.58271 * 2 1 4 4 C 1.53190 * 109.58987 * 120.28365 * 2 1 3 5 5 C 1.53034 * 109.31323 * 174.42271 * 4 2 1 6 6 H 1.08997 * 109.46117 * 58.64449 * 5 4 2 7 7 N 1.46500 * 109.46158 * 178.61782 * 5 4 2 8 8 C 1.34780 * 120.00084 * 205.28168 * 7 5 4 9 9 O 1.21276 * 119.99895 * 359.71265 * 8 7 5 10 10 C 1.50701 * 119.99840 * 179.72427 * 8 7 5 11 11 C 1.50709 * 109.46784 * 179.97438 * 10 8 7 12 12 C 1.38651 * 120.79286 * 99.99922 * 11 10 8 13 13 C 1.38188 * 119.17625 * 179.97438 * 12 11 10 14 14 N 1.31877 * 120.79424 * 359.97438 * 13 12 11 15 15 C 1.31852 * 121.74013 * 0.02562 * 14 13 12 16 16 C 1.38352 * 120.74307 * 359.74208 * 15 14 13 17 17 Cl 1.73593 * 120.43494 * 180.28865 * 16 15 14 18 18 C 1.53043 * 109.54126 * 298.63594 * 5 4 2 19 19 C 1.53189 * 109.30982 * 61.36543 * 18 5 4 20 20 N 1.46927 * 109.58507 * 239.57862 * 2 1 3 21 21 C 1.36938 * 120.63436 * 6.61600 * 20 2 1 22 22 H 1.08000 * 119.99975 * 330.17321 * 21 20 2 23 23 C 1.38817 * 119.99780 * 150.16348 * 21 20 2 24 24 N 1.31616 * 119.99747 * 344.49170 * 23 21 20 25 25 Si 1.86798 * 119.99624 * 164.49017 * 23 21 20 26 26 H 1.48500 * 109.47118 * 90.00116 * 25 23 21 27 27 H 1.48497 * 109.46980 * 209.99950 * 25 23 21 28 28 H 1.48495 * 109.47353 * 330.00217 * 25 23 21 29 29 H 1.08995 * 109.46790 * 299.71043 * 1 2 3 30 30 H 1.08997 * 109.47069 * 59.71825 * 1 2 3 31 31 H 1.09006 * 109.46719 * 179.71640 * 1 2 3 32 32 H 1.09001 * 109.49499 * 54.47104 * 4 2 1 33 33 H 1.08997 * 109.52459 * 294.38993 * 4 2 1 34 34 H 0.96998 * 120.00023 * 24.99259 * 7 5 4 35 35 H 1.09000 * 109.47071 * 299.99223 * 10 8 7 36 36 H 1.09002 * 109.47405 * 59.99440 * 10 8 7 37 37 H 1.08001 * 120.41062 * 359.97438 * 12 11 10 38 38 H 1.07995 * 119.60261 * 180.02562 * 13 12 11 39 39 H 1.08000 * 119.62756 * 180.02562 * 15 14 13 40 40 H 1.08996 * 109.50170 * 181.31819 * 18 5 4 41 41 H 1.09000 * 109.49498 * 301.41528 * 18 5 4 42 42 H 1.09005 * 109.58389 * 185.58065 * 19 18 5 43 43 H 1.08995 * 109.58899 * 65.15714 * 19 18 5 44 44 H 0.97004 * 119.99340 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0437 -0.7278 1.2463 5 6 3.5675 -0.8464 1.1711 6 1 4.0061 0.1488 1.0988 7 7 4.0653 -1.5127 2.3771 8 6 5.3278 -1.2942 2.7954 9 8 6.0534 -0.5500 2.1705 10 6 5.8378 -1.9748 4.0395 11 6 7.2673 -1.5656 4.2858 12 6 7.5747 -0.5865 5.2181 13 6 8.8969 -0.2376 5.4175 14 7 9.8603 -0.8240 4.7341 15 6 9.6063 -1.7588 3.8396 16 6 8.3073 -2.1638 3.5892 17 17 7.9827 -3.4005 2.4151 18 6 3.9570 -1.6657 -0.0615 19 6 3.4651 -0.9485 -1.3226 20 7 2.0225 -0.7009 -1.1937 21 6 1.1537 -1.1154 -2.1676 22 1 0.1397 -1.3820 -1.9088 23 6 1.5764 -1.1927 -3.4876 24 7 2.6872 -0.5923 -3.8591 25 14 0.5688 -2.1489 -4.7364 26 1 -0.4250 -1.2440 -5.3679 27 1 1.4690 -2.7011 -5.7804 28 1 -0.1388 -3.2618 -4.0538 29 1 -0.3633 0.5093 0.8925 30 1 -0.3633 0.5182 -0.8874 31 1 -0.3633 -1.0277 -0.0051 32 1 1.6031 -1.7237 1.2934 33 1 1.7661 -0.1646 2.1373 34 1 3.4850 -2.1079 2.8769 35 1 5.2239 -1.6823 4.8913 36 1 5.7870 -3.0558 3.9091 37 1 6.7906 -0.1026 5.7815 38 1 9.1442 0.5238 6.1423 39 1 10.4219 -2.2167 3.2996 40 1 5.0413 -1.7696 -0.1016 41 1 3.4984 -2.6527 -0.0020 42 1 3.6519 -1.5744 -2.1953 43 1 3.9903 0.0003 -1.4318 44 1 2.9827 -0.6466 -4.7814 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947721973.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:17 Heat of formation + Delta-G solvation = 7.122807 kcal Electronic energy + Delta-G solvation = -26878.111538 eV Core-core repulsion = 23049.531264 eV Total energy + Delta-G solvation = -3828.580274 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.73098 -39.55790 -37.68826 -36.80930 -34.65604 -34.05971 -32.42821 -31.42476 -31.29729 -29.82025 -28.45165 -26.35883 -24.80758 -23.83590 -23.11011 -21.97504 -21.00991 -20.08124 -19.23765 -17.30521 -17.19118 -16.97417 -16.33631 -16.25157 -15.62725 -15.04361 -14.93492 -14.50130 -14.26447 -13.97253 -13.73949 -13.53611 -13.33929 -13.10013 -13.04071 -12.75205 -12.53529 -12.19488 -11.89989 -11.60828 -11.41346 -11.23510 -11.11586 -10.94181 -10.89765 -10.65500 -10.33682 -10.19659 -10.08622 -10.04908 -9.85710 -9.74914 -9.72571 -9.33952 -9.17315 -8.73018 -8.42760 -6.63674 -5.77381 -3.21699 0.67324 0.80598 1.84688 2.71228 3.18514 3.36918 3.44354 3.45612 3.52186 4.11905 4.14384 4.31465 4.48805 4.61640 4.79136 4.92880 4.99236 5.19207 5.26511 5.28924 5.36649 5.41989 5.52000 5.57553 5.75881 5.77724 5.97960 6.13952 6.20027 6.23855 6.30069 6.40403 6.41047 6.49656 6.63128 6.79306 6.87711 7.02030 7.08459 7.37741 7.55470 7.63653 7.69663 7.82371 8.34176 8.47123 9.22259 9.85917 10.43339 11.31324 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.019535 B = 0.002711 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.958336 B =10327.701367 C =11118.549889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.171 3.829 3 H 0.026 0.974 4 C -0.133 4.133 5 C 0.152 3.848 6 H 0.081 0.919 7 N -0.723 5.723 8 C 0.515 3.485 9 O -0.528 6.528 10 C -0.112 4.112 11 C -0.010 4.010 12 C -0.151 4.151 13 C 0.101 3.899 14 N -0.473 5.473 15 C 0.114 3.886 16 C -0.073 4.073 17 Cl -0.046 7.046 18 C -0.146 4.146 19 C 0.176 3.824 20 N -0.587 5.587 21 C -0.252 4.252 22 H 0.069 0.931 23 C 0.003 3.997 24 N -0.901 5.901 25 Si 0.900 3.100 26 H -0.287 1.287 27 H -0.290 1.290 28 H -0.280 1.280 29 H 0.038 0.962 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.395 0.605 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.143 0.857 38 H 0.163 0.837 39 H 0.165 0.835 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.088 0.912 43 H 0.020 0.980 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.344 -3.859 20.917 22.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.064 3.936 3 H 0.044 0.956 4 C -0.173 4.173 5 C 0.049 3.951 6 H 0.099 0.901 7 N -0.373 5.373 8 C 0.300 3.700 9 O -0.404 6.404 10 C -0.152 4.152 11 C -0.019 4.019 12 C -0.171 4.171 13 C -0.056 4.056 14 N -0.182 5.182 15 C -0.044 4.044 16 C -0.102 4.102 17 Cl -0.017 7.017 18 C -0.186 4.186 19 C 0.049 3.951 20 N -0.311 5.311 21 C -0.382 4.382 22 H 0.087 0.913 23 C -0.195 4.195 24 N -0.545 5.545 25 Si 0.729 3.271 26 H -0.214 1.214 27 H -0.216 1.216 28 H -0.205 1.205 29 H 0.057 0.943 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.228 0.772 35 H 0.127 0.873 36 H 0.128 0.872 37 H 0.161 0.839 38 H 0.180 0.820 39 H 0.182 0.818 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.106 0.894 43 H 0.038 0.962 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.769 -3.160 20.314 22.350 hybrid contribution -1.646 -1.144 -0.751 2.141 sum 7.123 -4.304 19.562 21.259 Atomic orbital electron populations 1.21792 0.95776 1.01417 1.00288 1.20350 0.93062 0.93539 0.86677 0.95638 1.22378 0.93689 1.01626 0.99650 1.21042 0.94181 0.96726 0.83169 0.90127 1.46284 1.13109 1.48791 1.29152 1.20108 0.82309 0.82074 0.85558 1.90757 1.55836 1.36934 1.56867 1.20790 0.92642 1.03104 0.98698 1.19626 0.94101 0.94322 0.93852 1.22040 0.98664 0.97376 0.99042 1.22825 0.88463 0.97372 0.96931 1.67799 1.36656 1.07568 1.06130 1.22763 0.93965 0.93208 0.94457 1.21980 0.95695 0.96598 0.95930 1.98401 1.95728 1.51257 1.56345 1.22555 0.99736 0.99515 0.96795 1.20725 0.83245 0.97261 0.93824 1.44159 1.02969 1.64794 1.19134 1.19137 0.95167 1.37803 0.86105 0.91311 1.25114 0.97870 0.99549 0.97017 1.70025 1.24039 1.43733 1.16721 0.86349 0.79408 0.79985 0.81325 1.21419 1.21625 1.20535 0.94340 0.91869 0.92766 0.91807 0.92747 0.77193 0.87273 0.87169 0.83921 0.82005 0.81831 0.92897 0.92727 0.89426 0.96199 0.93642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 7.95 37.16 0.30 -2.14 16 2 C 0.17 3.43 3.50 -67.60 -0.24 3.19 16 3 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 4 C -0.13 -2.15 4.84 -26.62 -0.13 -2.28 16 5 C 0.15 2.56 2.42 -67.89 -0.16 2.40 16 6 H 0.08 1.56 7.57 -51.93 -0.39 1.16 16 7 N -0.72 -9.39 5.08 -53.77 -0.27 -9.66 16 8 C 0.51 6.99 7.69 -10.98 -0.08 6.90 16 9 O -0.53 -9.57 15.63 5.56 0.09 -9.48 16 10 C -0.11 -1.04 5.35 -29.03 -0.16 -1.20 16 11 C -0.01 -0.11 4.45 -104.28 -0.46 -0.57 16 12 C -0.15 -1.35 9.78 -39.45 -0.39 -1.74 16 13 C 0.10 0.93 11.18 -17.55 -0.20 0.73 16 14 N -0.47 -5.34 10.36 -13.22 -0.14 -5.47 16 15 C 0.11 1.26 10.99 -17.50 -0.19 1.06 16 16 C -0.07 -0.84 6.26 -39.36 -0.25 -1.09 16 17 Cl -0.05 -0.55 27.60 -51.86 -1.43 -1.98 16 18 C -0.15 -2.87 5.65 -26.61 -0.15 -3.02 16 19 C 0.18 4.24 5.28 -3.71 -0.02 4.22 16 20 N -0.59 -14.25 2.99 -164.77 -0.49 -14.74 16 21 C -0.25 -6.68 8.58 -15.06 -0.13 -6.81 16 22 H 0.07 1.76 6.23 -52.49 -0.33 1.44 16 23 C 0.00 0.09 4.94 -17.43 -0.09 0.01 16 24 N -0.90 -26.15 11.23 55.49 0.62 -25.53 16 25 Si 0.90 21.48 29.58 -169.99 -5.03 16.45 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 28 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 29 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 1.24 7.67 -51.93 -0.40 0.85 16 31 H 0.05 0.98 7.40 -51.93 -0.38 0.60 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.39 3.85 8.60 -40.82 -0.35 3.49 16 35 H 0.11 0.66 8.04 -51.93 -0.42 0.24 16 36 H 0.11 0.89 7.45 -51.93 -0.39 0.50 16 37 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16 38 H 0.16 0.98 8.06 -52.49 -0.42 0.55 16 39 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16 40 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 42 H 0.09 2.37 6.15 -51.93 -0.32 2.05 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 371.23 15.07 5.59 5.59 Total: -1.00 -32.87 371.23 -9.74 -42.61 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -6.34 Total: 2.55 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: -2.34 Total: -0.33 kcal Atomic # 7 Polarization: -55.13 SS G_CDS: -0.28 Total: -55.41 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.09 Total: -9.48 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.43 Total: -1.98 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.87 -9.74 -42.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947721973.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.730 kcal (2) G-P(sol) polarization free energy of solvation -32.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds