Wall clock time and date at job start Tue Mar 31 2020 20:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.58271 * 2 1 4 4 C 1.53190 * 109.58987 * 120.28365 * 2 1 3 5 5 C 1.53034 * 109.31323 * 174.42271 * 4 2 1 6 6 H 1.08997 * 109.46117 * 58.64449 * 5 4 2 7 7 N 1.46500 * 109.46158 * 178.61782 * 5 4 2 8 8 C 1.34780 * 120.00084 * 205.28168 * 7 5 4 9 9 O 1.21276 * 119.99895 * 359.71265 * 8 7 5 10 10 C 1.50701 * 119.99840 * 179.72427 * 8 7 5 11 11 C 1.50709 * 109.46784 * 179.97438 * 10 8 7 12 12 C 1.38651 * 120.79286 * 99.99922 * 11 10 8 13 13 C 1.38188 * 119.17625 * 179.97438 * 12 11 10 14 14 N 1.31877 * 120.79424 * 359.97438 * 13 12 11 15 15 C 1.31852 * 121.74013 * 0.02562 * 14 13 12 16 16 C 1.38352 * 120.74307 * 359.74208 * 15 14 13 17 17 Cl 1.73593 * 120.43494 * 180.28865 * 16 15 14 18 18 C 1.53043 * 109.54126 * 298.63594 * 5 4 2 19 19 C 1.53189 * 109.30982 * 61.36543 * 18 5 4 20 20 N 1.46927 * 109.58507 * 239.57862 * 2 1 3 21 21 C 1.36938 * 120.63436 * 6.61600 * 20 2 1 22 22 H 1.08000 * 119.99975 * 330.17321 * 21 20 2 23 23 C 1.38817 * 119.99780 * 150.16348 * 21 20 2 24 24 N 1.31616 * 119.99747 * 344.49170 * 23 21 20 25 25 Si 1.86798 * 119.99624 * 164.49017 * 23 21 20 26 26 H 1.48500 * 109.47118 * 90.00116 * 25 23 21 27 27 H 1.48497 * 109.46980 * 209.99950 * 25 23 21 28 28 H 1.48495 * 109.47353 * 330.00217 * 25 23 21 29 29 H 1.08995 * 109.46790 * 299.71043 * 1 2 3 30 30 H 1.08997 * 109.47069 * 59.71825 * 1 2 3 31 31 H 1.09006 * 109.46719 * 179.71640 * 1 2 3 32 32 H 1.09001 * 109.49499 * 54.47104 * 4 2 1 33 33 H 1.08997 * 109.52459 * 294.38993 * 4 2 1 34 34 H 0.96998 * 120.00023 * 24.99259 * 7 5 4 35 35 H 1.09000 * 109.47071 * 299.99223 * 10 8 7 36 36 H 1.09002 * 109.47405 * 59.99440 * 10 8 7 37 37 H 1.08001 * 120.41062 * 359.97438 * 12 11 10 38 38 H 1.07995 * 119.60261 * 180.02562 * 13 12 11 39 39 H 1.08000 * 119.62756 * 180.02562 * 15 14 13 40 40 H 1.08996 * 109.50170 * 181.31819 * 18 5 4 41 41 H 1.09000 * 109.49498 * 301.41528 * 18 5 4 42 42 H 1.09005 * 109.58389 * 185.58065 * 19 18 5 43 43 H 1.08995 * 109.58899 * 65.15714 * 19 18 5 44 44 H 0.97004 * 119.99340 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0437 -0.7278 1.2463 5 6 3.5675 -0.8464 1.1711 6 1 4.0061 0.1488 1.0988 7 7 4.0653 -1.5127 2.3771 8 6 5.3278 -1.2942 2.7954 9 8 6.0534 -0.5500 2.1705 10 6 5.8378 -1.9748 4.0395 11 6 7.2673 -1.5656 4.2858 12 6 7.5747 -0.5865 5.2181 13 6 8.8969 -0.2376 5.4175 14 7 9.8603 -0.8240 4.7341 15 6 9.6063 -1.7588 3.8396 16 6 8.3073 -2.1638 3.5892 17 17 7.9827 -3.4005 2.4151 18 6 3.9570 -1.6657 -0.0615 19 6 3.4651 -0.9485 -1.3226 20 7 2.0225 -0.7009 -1.1937 21 6 1.1537 -1.1154 -2.1676 22 1 0.1397 -1.3820 -1.9088 23 6 1.5764 -1.1927 -3.4876 24 7 2.6872 -0.5923 -3.8591 25 14 0.5688 -2.1489 -4.7364 26 1 -0.4250 -1.2440 -5.3679 27 1 1.4690 -2.7011 -5.7804 28 1 -0.1388 -3.2618 -4.0538 29 1 -0.3633 0.5093 0.8925 30 1 -0.3633 0.5182 -0.8874 31 1 -0.3633 -1.0277 -0.0051 32 1 1.6031 -1.7237 1.2934 33 1 1.7661 -0.1646 2.1373 34 1 3.4850 -2.1079 2.8769 35 1 5.2239 -1.6823 4.8913 36 1 5.7870 -3.0558 3.9091 37 1 6.7906 -0.1026 5.7815 38 1 9.1442 0.5238 6.1423 39 1 10.4219 -2.2167 3.2996 40 1 5.0413 -1.7696 -0.1016 41 1 3.4984 -2.6527 -0.0020 42 1 3.6519 -1.5744 -2.1953 43 1 3.9903 0.0003 -1.4318 44 1 2.9827 -0.6466 -4.7814 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947721973.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:16 Heat of formation + Delta-G solvation = -14.302694 kcal Electronic energy + Delta-G solvation = -26879.040617 eV Core-core repulsion = 23049.531264 eV Total energy + Delta-G solvation = -3829.509354 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.56703 -40.68142 -39.21608 -37.66277 -36.10792 -34.90233 -34.20933 -32.98127 -32.03764 -31.43830 -29.48201 -27.88469 -26.62576 -24.57374 -24.20747 -23.50655 -22.35581 -21.38657 -20.83282 -18.49653 -18.04602 -17.94966 -17.81346 -17.24557 -16.98062 -16.53246 -16.03919 -15.73545 -15.54850 -15.32999 -14.95244 -14.93230 -14.63563 -14.55370 -14.34887 -13.85467 -13.50189 -13.32936 -13.03148 -12.94387 -12.73306 -12.70295 -12.61650 -12.59155 -12.33644 -12.27798 -12.10087 -11.84556 -11.71504 -11.49076 -11.32783 -11.02450 -10.61429 -10.55349 -10.49731 -9.98002 -9.95182 -8.64100 -7.84135 -5.30910 -0.07513 0.05508 1.02148 1.46426 1.48198 1.57127 1.67692 2.19602 2.52415 2.70506 3.32452 3.37059 3.46215 3.59320 3.65754 3.84209 3.92272 3.97192 4.08461 4.23129 4.28869 4.40413 4.41257 4.54269 4.62476 4.63735 4.72244 4.76133 4.78617 4.87168 4.97039 5.06955 5.09395 5.12547 5.17622 5.39429 5.49642 5.52460 5.56039 5.60166 5.71040 5.72902 6.43111 6.63282 6.81795 7.16952 7.33559 7.89088 8.42160 9.23269 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.019535 B = 0.002711 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.958336 B =10327.701367 C =11118.549889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.158 3.842 3 H 0.009 0.991 4 C -0.117 4.117 5 C 0.165 3.835 6 H 0.053 0.947 7 N -0.709 5.709 8 C 0.513 3.487 9 O -0.578 6.578 10 C -0.102 4.102 11 C -0.026 4.026 12 C -0.146 4.146 13 C 0.095 3.905 14 N -0.495 5.495 15 C 0.099 3.901 16 C -0.090 4.090 17 Cl -0.059 7.059 18 C -0.129 4.129 19 C 0.185 3.815 20 N -0.603 5.603 21 C -0.248 4.248 22 H 0.081 0.919 23 C -0.058 4.058 24 N -0.941 5.941 25 Si 0.963 3.037 26 H -0.286 1.286 27 H -0.300 1.300 28 H -0.266 1.266 29 H 0.078 0.922 30 H 0.037 0.963 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.417 0.583 35 H 0.153 0.847 36 H 0.125 0.875 37 H 0.177 0.823 38 H 0.193 0.807 39 H 0.171 0.829 40 H 0.040 0.960 41 H 0.061 0.939 42 H 0.051 0.949 43 H -0.016 1.016 44 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.411 -4.555 24.483 25.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.052 3.948 3 H 0.026 0.974 4 C -0.156 4.156 5 C 0.060 3.940 6 H 0.071 0.929 7 N -0.361 5.361 8 C 0.300 3.700 9 O -0.457 6.457 10 C -0.141 4.141 11 C -0.035 4.035 12 C -0.166 4.166 13 C -0.062 4.062 14 N -0.204 5.204 15 C -0.058 4.058 16 C -0.119 4.119 17 Cl -0.030 7.030 18 C -0.169 4.169 19 C 0.058 3.942 20 N -0.327 5.327 21 C -0.379 4.379 22 H 0.098 0.902 23 C -0.252 4.252 24 N -0.588 5.588 25 Si 0.791 3.209 26 H -0.212 1.212 27 H -0.226 1.226 28 H -0.190 1.190 29 H 0.097 0.903 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.111 0.889 34 H 0.254 0.746 35 H 0.171 0.829 36 H 0.143 0.857 37 H 0.195 0.805 38 H 0.210 0.790 39 H 0.189 0.811 40 H 0.059 0.941 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.002 0.998 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 6.796 -3.891 23.945 25.193 hybrid contribution -1.007 -0.825 -1.786 2.211 sum 5.789 -4.716 22.158 23.383 Atomic orbital electron populations 1.21711 0.93850 1.01721 1.01116 1.20658 0.94743 0.92807 0.86610 0.97376 1.22172 0.92393 1.02300 0.98732 1.20587 0.94930 0.95017 0.83500 0.92867 1.45971 1.13571 1.48746 1.27798 1.20860 0.81630 0.81188 0.86279 1.90752 1.57053 1.39253 1.58671 1.20821 0.92280 1.03371 0.97618 1.19942 0.94518 0.94820 0.94245 1.22444 0.99439 0.96319 0.98368 1.23429 0.88518 0.97408 0.96802 1.67829 1.37832 1.08031 1.06721 1.22941 0.94351 0.93608 0.94913 1.22153 0.96423 0.97028 0.96277 1.98389 1.95763 1.51848 1.57013 1.22279 0.98725 0.99594 0.96285 1.20408 0.83763 0.95229 0.94815 1.44424 1.02521 1.65533 1.20191 1.19543 0.95681 1.36127 0.86505 0.90167 1.25898 0.99136 1.01092 0.99100 1.70209 1.26135 1.45960 1.16503 0.85338 0.77768 0.78908 0.78840 1.21245 1.22633 1.19017 0.90303 0.94353 0.92557 0.90493 0.88940 0.74629 0.82883 0.85717 0.80543 0.78988 0.81142 0.94125 0.92043 0.93067 0.99819 0.94500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.25 7.95 71.98 0.57 -3.67 16 2 C 0.16 6.14 3.50 44.97 0.16 6.29 16 3 H 0.01 0.36 8.14 -2.38 -0.02 0.34 16 4 C -0.12 -3.38 4.84 30.67 0.15 -3.23 16 5 C 0.16 5.32 2.42 45.02 0.11 5.43 16 6 H 0.05 2.06 7.57 -2.39 -0.02 2.04 16 7 N -0.71 -16.30 5.08 -442.41 -2.25 -18.54 16 8 C 0.51 12.77 7.69 87.66 0.67 13.44 16 9 O -0.58 -20.69 15.63 -3.02 -0.05 -20.73 16 10 C -0.10 -1.52 5.35 29.11 0.16 -1.36 16 11 C -0.03 -0.50 4.45 -19.64 -0.09 -0.58 16 12 C -0.15 -2.16 9.78 22.36 0.22 -1.94 16 13 C 0.09 1.53 11.18 84.67 0.95 2.48 16 14 N -0.49 -10.74 10.36 -195.75 -2.03 -12.77 16 15 C 0.10 2.17 10.99 84.72 0.93 3.11 16 16 C -0.09 -2.01 6.26 22.42 0.14 -1.87 16 17 Cl -0.06 -1.38 27.60 -2.72 -0.08 -1.46 16 18 C -0.13 -5.12 5.65 30.67 0.17 -4.95 16 19 C 0.18 9.34 5.28 86.36 0.46 9.80 16 20 N -0.60 -29.65 2.99 -675.20 -2.02 -31.67 16 21 C -0.25 -13.21 8.58 84.03 0.72 -12.49 16 22 H 0.08 4.03 6.23 -2.91 -0.02 4.01 16 23 C -0.06 -3.23 4.94 84.86 0.42 -2.81 16 24 N -0.94 -57.26 11.23 21.65 0.24 -57.02 16 25 Si 0.96 44.95 29.58 68.60 2.03 46.98 16 26 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 27 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 28 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 29 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.04 1.45 7.67 -2.39 -0.02 1.44 16 31 H 0.06 1.86 7.40 -2.38 -0.02 1.84 16 32 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.42 6.17 8.60 -92.71 -0.80 5.38 16 35 H 0.15 0.95 8.04 -2.39 -0.02 0.93 16 36 H 0.12 1.56 7.45 -2.39 -0.02 1.54 16 37 H 0.18 1.30 8.06 -2.91 -0.02 1.28 16 38 H 0.19 1.72 8.06 -2.91 -0.02 1.70 16 39 H 0.17 3.19 8.06 -2.91 -0.02 3.17 16 40 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 42 H 0.05 2.94 6.15 -2.38 -0.01 2.92 16 43 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 44 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -76.73 371.23 1.82 -74.91 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: 0.22 Total: 12.67 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: 5.74 Total: 7.63 kcal Atomic # 7 Polarization: -113.95 SS G_CDS: -6.05 Total: -120.00 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.05 Total: -20.73 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Atomic # 17 Polarization: -1.38 SS G_CDS: -0.08 Total: -1.46 kcal Total: -76.73 1.82 -74.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947721973.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.612 kcal (2) G-P(sol) polarization free energy of solvation -76.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds