Wall clock time and date at job start Tue Mar 31 2020 20:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.58746 * 2 1 4 4 C 1.53195 * 109.58402 * 239.56789 * 2 1 3 5 5 C 1.53047 * 109.30952 * 185.58159 * 4 2 1 6 6 H 1.09003 * 109.45852 * 301.34538 * 5 4 2 7 7 N 1.46492 * 109.45747 * 181.37324 * 5 4 2 8 8 C 1.34777 * 119.99717 * 155.00209 * 7 5 4 9 9 O 1.21280 * 120.00322 * 359.97438 * 8 7 5 10 10 C 1.50708 * 119.99924 * 179.97438 * 8 7 5 11 11 C 1.50700 * 109.47137 * 179.97438 * 10 8 7 12 12 C 1.38654 * 120.79226 * 99.99925 * 11 10 8 13 13 C 1.38185 * 119.17662 * 179.97438 * 12 11 10 14 14 N 1.31873 * 120.79737 * 0.02562 * 13 12 11 15 15 C 1.31849 * 121.73754 * 0.02562 * 14 13 12 16 16 C 1.38348 * 120.74215 * 359.73834 * 15 14 13 17 17 Cl 1.73608 * 120.43018 * 180.29061 * 16 15 14 18 18 C 1.53036 * 109.53679 * 61.36359 * 5 4 2 19 19 C 1.53624 * 109.24589 * 298.51018 * 18 5 4 20 20 N 1.46921 * 109.58196 * 120.27943 * 2 1 3 21 21 C 1.36940 * 120.63521 * 353.37574 * 20 2 1 22 22 H 1.08002 * 119.99955 * 29.12463 * 21 20 2 23 23 C 1.38815 * 119.99799 * 209.40694 * 21 20 2 24 24 N 1.31614 * 120.00064 * 14.76938 * 23 21 20 25 25 Si 1.86797 * 119.99562 * 194.76735 * 23 21 20 26 26 H 1.48499 * 109.47595 * 0.02562 * 25 23 21 27 27 H 1.48507 * 109.46779 * 120.00262 * 25 23 21 28 28 H 1.48495 * 109.47384 * 239.99559 * 25 23 21 29 29 H 1.08996 * 109.47275 * 299.72324 * 1 2 3 30 30 H 1.09008 * 109.46820 * 59.71965 * 1 2 3 31 31 H 1.09001 * 109.47306 * 179.71835 * 1 2 3 32 32 H 1.09001 * 109.49780 * 305.53009 * 4 2 1 33 33 H 1.08998 * 109.49711 * 65.63365 * 4 2 1 34 34 H 0.96998 * 120.00289 * 334.99288 * 7 5 4 35 35 H 1.08995 * 109.47050 * 300.00032 * 10 8 7 36 36 H 1.09001 * 109.46901 * 59.99595 * 10 8 7 37 37 H 1.08004 * 120.40978 * 0.02562 * 12 11 10 38 38 H 1.07999 * 119.60002 * 180.02562 * 13 12 11 39 39 H 1.07999 * 119.62446 * 180.02562 * 15 14 13 40 40 H 1.08999 * 109.49914 * 58.58567 * 18 5 4 41 41 H 1.09001 * 109.49469 * 178.68633 * 18 5 4 42 42 H 1.08996 * 109.73965 * 295.11988 * 19 18 5 43 43 H 1.08999 * 109.66525 * 174.55078 * 19 18 5 44 44 H 0.97003 * 119.99912 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7311 -1.2445 5 6 3.5675 -0.8497 -1.1690 6 1 4.0062 0.1458 -1.0994 7 7 4.0651 -1.5193 -2.3731 8 6 5.3294 -1.3064 -2.7888 9 8 6.0550 -0.5602 -2.1663 10 6 5.8416 -1.9957 -4.0273 11 6 7.2723 -1.5907 -4.2724 12 6 8.3186 -2.4218 -3.9023 13 6 9.6178 -2.0174 -4.1433 14 7 9.8682 -0.8568 -4.7171 15 6 8.8995 -0.0400 -5.0817 16 6 7.5739 -0.3791 -4.8771 17 17 6.3047 0.6992 -5.3671 18 6 3.9568 -1.6657 0.0657 19 6 3.4656 -0.9403 1.3277 20 7 2.0224 -0.6980 1.1954 21 6 1.1536 -1.1099 2.1704 22 1 0.1362 -1.3661 1.9140 23 6 1.5789 -1.1924 3.4893 24 7 2.7012 -0.6112 3.8564 25 14 0.5582 -2.1285 4.7428 26 1 -0.6489 -2.6859 4.0814 27 1 1.3669 -3.2367 5.3113 28 1 0.1456 -1.2076 5.8322 29 1 -0.3633 0.5095 0.8924 30 1 -0.3633 0.5182 -0.8875 31 1 -0.3634 -1.0276 -0.0051 32 1 1.6029 -1.7271 -1.2891 33 1 1.7661 -0.1696 -2.1366 34 1 3.4848 -2.1159 -2.8712 35 1 5.7876 -3.0757 -3.8906 36 1 5.2309 -1.7068 -4.8827 37 1 8.1206 -3.3738 -3.4323 38 1 10.4380 -2.6596 -3.8582 39 1 9.1435 0.9024 -5.5495 40 1 3.4982 -2.6529 0.0088 41 1 5.0411 -1.7695 0.1061 42 1 3.9877 0.0107 1.4324 43 1 3.6531 -1.5609 2.2039 44 1 2.9982 -0.6686 4.7781 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947721974.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:36 Heat of formation + Delta-G solvation = -13.870229 kcal Electronic energy + Delta-G solvation = -26832.752882 eV Core-core repulsion = 23003.262281 eV Total energy + Delta-G solvation = -3829.490601 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.57027 -40.68064 -39.21107 -37.65851 -36.11228 -34.90608 -34.21399 -32.94996 -32.04253 -31.43243 -29.48230 -27.88054 -26.63268 -24.57859 -24.20678 -23.50673 -22.35876 -21.38465 -20.83737 -18.49423 -18.05392 -17.96106 -17.81088 -17.24045 -16.98901 -16.52703 -16.03572 -15.73516 -15.55424 -15.30930 -14.96408 -14.93902 -14.63470 -14.52400 -14.37586 -13.84424 -13.50898 -13.32877 -13.02645 -12.95137 -12.73064 -12.69780 -12.63534 -12.58050 -12.34316 -12.27046 -12.04491 -11.83400 -11.72193 -11.49322 -11.32560 -11.02169 -10.61822 -10.56493 -10.50385 -9.97697 -9.95273 -8.64806 -7.83177 -5.30108 -0.07924 0.05176 1.01030 1.46883 1.48855 1.58831 1.67746 2.19003 2.52942 2.70047 3.33221 3.36559 3.46067 3.59429 3.65258 3.83889 3.91800 3.97042 4.08704 4.23302 4.28248 4.40127 4.41336 4.53641 4.61744 4.63441 4.71672 4.76664 4.77904 4.86913 4.96086 5.06656 5.09247 5.12247 5.17481 5.39973 5.49742 5.51578 5.55880 5.59894 5.72159 5.73874 6.43513 6.63073 6.81374 7.17559 7.33325 7.89347 8.42072 9.24092 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.020652 B = 0.002608 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.462948 B =10734.601086 C =11490.985865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.158 3.842 3 H 0.007 0.993 4 C -0.117 4.117 5 C 0.164 3.836 6 H 0.050 0.950 7 N -0.709 5.709 8 C 0.513 3.487 9 O -0.578 6.578 10 C -0.102 4.102 11 C -0.026 4.026 12 C -0.150 4.150 13 C 0.095 3.905 14 N -0.495 5.495 15 C 0.100 3.900 16 C -0.087 4.087 17 Cl -0.055 7.055 18 C -0.128 4.128 19 C 0.182 3.818 20 N -0.603 5.603 21 C -0.246 4.246 22 H 0.082 0.918 23 C -0.059 4.059 24 N -0.942 5.942 25 Si 0.964 3.036 26 H -0.260 1.260 27 H -0.294 1.294 28 H -0.298 1.298 29 H 0.038 0.962 30 H 0.076 0.924 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.417 0.583 35 H 0.148 0.852 36 H 0.130 0.870 37 H 0.172 0.828 38 H 0.191 0.809 39 H 0.174 0.826 40 H 0.064 0.936 41 H 0.043 0.957 42 H -0.017 1.017 43 H 0.056 0.944 44 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.106 -6.404 -23.108 24.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.052 3.948 3 H 0.024 0.976 4 C -0.156 4.156 5 C 0.059 3.941 6 H 0.068 0.932 7 N -0.361 5.361 8 C 0.300 3.700 9 O -0.457 6.457 10 C -0.141 4.141 11 C -0.035 4.035 12 C -0.169 4.169 13 C -0.062 4.062 14 N -0.204 5.204 15 C -0.057 4.057 16 C -0.116 4.116 17 Cl -0.026 7.026 18 C -0.168 4.168 19 C 0.056 3.944 20 N -0.327 5.327 21 C -0.376 4.376 22 H 0.099 0.901 23 C -0.253 4.253 24 N -0.590 5.590 25 Si 0.793 3.207 26 H -0.184 1.184 27 H -0.221 1.221 28 H -0.225 1.225 29 H 0.057 0.943 30 H 0.095 0.905 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.106 0.894 34 H 0.254 0.746 35 H 0.166 0.834 36 H 0.148 0.852 37 H 0.190 0.810 38 H 0.208 0.792 39 H 0.191 0.809 40 H 0.083 0.917 41 H 0.062 0.938 42 H 0.001 0.999 43 H 0.074 0.926 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 7.394 -5.528 -22.731 24.535 hybrid contribution -1.244 -0.227 1.369 1.863 sum 6.150 -5.755 -21.362 22.963 Atomic orbital electron populations 1.21715 0.93869 1.01777 1.01070 1.20647 0.94730 0.92750 0.86699 0.97572 1.22167 0.92567 1.02306 0.98577 1.20589 0.94823 0.94994 0.83685 0.93189 1.45968 1.13387 1.48664 1.28056 1.20853 0.81719 0.81266 0.86115 1.90753 1.57317 1.38982 1.58673 1.20815 0.92012 1.04414 0.96851 1.19925 0.96762 0.92459 0.94350 1.22431 0.92364 1.02147 0.99971 1.23383 0.97235 0.92516 0.93027 1.67827 1.35900 1.05081 1.11590 1.22980 0.86375 0.99703 0.96667 1.22109 0.91469 0.93709 1.04352 1.98375 1.50875 1.63620 1.89739 1.22355 0.98904 0.99618 0.95949 1.20549 0.83577 0.95263 0.95036 1.44465 1.02599 1.65705 1.19933 1.19613 0.95412 1.36034 0.86561 0.90072 1.25890 0.99109 1.01244 0.99088 1.70205 1.25429 1.46729 1.16588 0.85244 0.78634 0.77785 0.79052 1.18431 1.22149 1.22506 0.94286 0.90499 0.92425 0.90271 0.89395 0.74625 0.83440 0.85207 0.81030 0.79222 0.80851 0.91687 0.93820 0.99923 0.92585 0.94491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.30 7.94 71.98 0.57 -3.72 16 2 C 0.16 6.18 3.49 44.98 0.16 6.34 16 3 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 4 C -0.12 -3.44 4.84 30.68 0.15 -3.29 16 5 C 0.16 5.32 2.41 45.02 0.11 5.43 16 6 H 0.05 1.97 7.58 -2.39 -0.02 1.95 16 7 N -0.71 -16.35 5.08 -442.41 -2.25 -18.59 16 8 C 0.51 12.81 7.68 87.66 0.67 13.49 16 9 O -0.58 -20.72 15.63 -3.03 -0.05 -20.77 16 10 C -0.10 -1.53 5.35 29.10 0.16 -1.38 16 11 C -0.03 -0.49 4.45 -19.65 -0.09 -0.58 16 12 C -0.15 -2.39 9.78 22.36 0.22 -2.17 16 13 C 0.09 1.61 11.18 84.67 0.95 2.56 16 14 N -0.49 -10.76 10.36 -195.76 -2.03 -12.79 16 15 C 0.10 2.12 10.99 84.72 0.93 3.05 16 16 C -0.09 -1.87 6.26 22.41 0.14 -1.73 16 17 Cl -0.05 -1.15 27.60 -2.72 -0.08 -1.22 16 18 C -0.13 -4.97 5.67 30.82 0.17 -4.79 16 19 C 0.18 9.13 5.31 86.51 0.46 9.59 16 20 N -0.60 -29.51 2.98 -674.38 -2.01 -31.53 16 21 C -0.25 -12.99 8.60 84.03 0.72 -12.27 16 22 H 0.08 4.06 6.21 -2.91 -0.02 4.04 16 23 C -0.06 -3.27 4.96 84.86 0.42 -2.85 16 24 N -0.94 -56.85 11.13 21.65 0.24 -56.61 16 25 Si 0.96 44.60 29.58 68.60 2.03 46.63 16 26 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 27 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 28 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 29 H 0.04 1.49 7.62 -2.39 -0.02 1.47 16 30 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 31 H 0.06 1.90 7.45 -2.39 -0.02 1.89 16 32 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.42 6.20 8.60 -92.71 -0.80 5.40 16 35 H 0.15 1.14 8.04 -2.39 -0.02 1.12 16 36 H 0.13 1.47 7.45 -2.39 -0.02 1.45 16 37 H 0.17 1.66 8.06 -2.91 -0.02 1.63 16 38 H 0.19 1.96 8.06 -2.91 -0.02 1.93 16 39 H 0.17 3.01 8.06 -2.91 -0.02 2.99 16 40 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 41 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 42 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 43 H 0.06 3.17 6.06 -2.39 -0.01 3.16 16 44 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -75.50 371.09 1.83 -73.68 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: 0.22 Total: 13.55 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: 5.74 Total: 7.65 kcal Atomic # 7 Polarization: -113.47 SS G_CDS: -6.05 Total: -119.52 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -0.05 Total: -20.77 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -0.08 Total: -1.22 kcal Total: -75.50 1.83 -73.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947721974.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.808 kcal (2) G-P(sol) polarization free energy of solvation -75.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds