Wall clock time and date at job start Tue Mar 31 2020 20:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.70254 * 2 1 4 4 C 1.52757 * 109.43203 * 120.16474 * 2 1 3 5 5 C 1.53040 * 109.38442 * 65.42332 * 4 2 1 6 6 H 1.09005 * 109.45818 * 301.21694 * 5 4 2 7 7 N 1.46501 * 109.46004 * 181.26038 * 5 4 2 8 8 C 1.34783 * 119.99512 * 154.93035 * 7 5 4 9 9 O 1.21278 * 120.00294 * 0.02562 * 8 7 5 10 10 C 1.50700 * 119.99377 * 179.97438 * 8 7 5 11 11 C 1.50702 * 109.46825 * 179.97438 * 10 8 7 12 12 C 1.38650 * 120.79919 * 264.72135 * 11 10 8 13 13 C 1.38183 * 119.17737 * 179.72859 * 12 11 10 14 14 N 1.31888 * 120.79585 * 0.55791 * 13 12 11 15 15 C 1.31846 * 121.73434 * 359.72276 * 14 13 12 16 16 C 1.38349 * 120.74615 * 359.97438 * 15 14 13 17 17 Cl 1.73598 * 120.43095 * 179.97438 * 16 15 14 18 18 C 1.53033 * 109.53905 * 61.23998 * 5 4 2 19 19 C 1.53196 * 109.31225 * 298.63809 * 18 5 4 20 20 N 1.46919 * 108.77664 * 54.63354 * 19 18 5 21 21 C 1.36936 * 120.63174 * 126.37082 * 20 19 18 22 22 H 1.08000 * 120.00286 * 207.48504 * 21 20 19 23 23 C 1.38811 * 120.00078 * 27.48034 * 21 20 19 24 24 N 1.31618 * 120.00155 * 17.80597 * 23 21 20 25 25 Si 1.86802 * 120.00260 * 197.81148 * 23 21 20 26 26 H 1.48503 * 109.47046 * 265.36123 * 25 23 21 27 27 H 1.48505 * 109.46961 * 25.35479 * 25 23 21 28 28 H 1.48491 * 109.47320 * 145.35593 * 25 23 21 29 29 H 1.08999 * 109.47586 * 180.35635 * 1 2 3 30 30 H 1.09001 * 109.47267 * 300.36168 * 1 2 3 31 31 H 1.09002 * 109.46918 * 60.35292 * 1 2 3 32 32 H 1.09006 * 109.56752 * 305.38476 * 4 2 1 33 33 H 1.09003 * 109.38742 * 185.35283 * 4 2 1 34 34 H 0.96994 * 120.00089 * 334.93197 * 7 5 4 35 35 H 1.08996 * 109.47365 * 299.99891 * 10 8 7 36 36 H 1.09002 * 109.47491 * 60.00457 * 10 8 7 37 37 H 1.08004 * 120.40754 * 359.97438 * 12 11 10 38 38 H 1.08002 * 119.60229 * 180.27601 * 13 12 11 39 39 H 1.07996 * 119.62536 * 179.97438 * 15 14 13 40 40 H 1.09000 * 109.50328 * 178.68695 * 18 5 4 41 41 H 1.09006 * 109.52727 * 58.60014 * 18 5 4 42 42 H 1.08997 * 109.58462 * 294.84461 * 19 18 5 43 43 H 1.09002 * 109.58534 * 174.42317 * 19 18 5 44 44 H 0.96994 * 120.00105 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0382 -0.7239 1.2455 5 6 1.6409 -2.2000 1.1726 6 1 0.5563 -2.2810 1.0996 7 7 2.1013 -2.8895 2.3805 8 6 1.4757 -4.0081 2.7977 9 8 0.5320 -4.4440 2.1731 10 6 1.9497 -4.7176 4.0398 11 6 1.0878 -5.9291 4.2861 12 6 0.0039 -5.8658 5.1483 13 6 -0.7672 -6.9955 5.3451 14 7 -0.4761 -8.1268 4.7329 15 6 0.5498 -8.2264 3.9107 16 6 1.3633 -7.1359 3.6596 17 17 2.7123 -7.2764 2.5760 18 6 2.2842 -2.8430 -0.0580 19 6 1.7740 -2.1420 -1.3210 20 7 2.0225 -0.6996 -1.1945 21 6 2.7051 -0.0211 -2.1685 22 1 3.2643 0.8679 -1.9166 23 6 2.6785 -0.4759 -3.4797 24 7 1.7470 -1.3228 -3.8638 25 14 3.9649 0.1137 -4.6992 26 1 3.4330 1.2748 -5.4571 27 1 5.1913 0.5203 -3.9672 28 1 4.2929 -0.9850 -5.6427 29 1 -0.3634 -1.0276 0.0064 30 1 -0.3634 0.5194 0.8867 31 1 -0.3633 0.5084 -0.8932 32 1 1.5987 -0.2723 2.1350 33 1 3.1240 -0.6413 1.2942 34 1 2.8563 -2.5411 2.8798 35 1 2.9858 -5.0292 3.9073 36 1 1.8795 -4.0429 4.8930 37 1 -0.2372 -4.9439 5.6566 38 1 -1.6158 -6.9527 6.0118 39 1 0.7573 -9.1698 3.4278 40 1 2.0199 -3.8998 -0.0966 41 1 3.3678 -2.7410 0.0020 42 1 0.7043 -2.3203 -1.4310 43 1 2.3024 -2.5288 -2.1924 44 1 1.7282 -1.6403 -4.7801 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947721975.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:40 Heat of formation + Delta-G solvation = -13.926113 kcal Electronic energy + Delta-G solvation = -26998.238471 eV Core-core repulsion = 23168.745447 eV Total energy + Delta-G solvation = -3829.493024 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.57429 -40.72896 -39.28818 -37.67425 -36.02498 -34.90136 -34.30303 -32.52287 -32.03944 -31.48887 -29.57588 -28.33157 -26.18130 -24.57856 -24.24328 -23.63155 -22.92443 -21.42445 -20.06356 -18.88160 -18.01197 -17.92058 -17.87332 -17.30054 -16.88175 -16.49705 -16.03185 -15.65432 -15.51101 -15.27719 -14.95310 -14.94176 -14.51153 -14.37224 -14.20168 -13.95432 -13.75767 -13.50976 -13.15889 -13.04411 -12.92690 -12.63652 -12.61058 -12.56723 -12.28792 -12.26618 -12.04426 -12.00652 -11.75998 -11.47980 -11.17676 -10.99792 -10.61566 -10.55365 -10.49925 -9.97068 -9.94796 -8.69146 -7.86053 -5.29971 -0.07837 0.05603 1.00806 1.46052 1.48160 1.57593 1.67558 2.20930 2.51693 2.70814 3.29866 3.37139 3.46282 3.61945 3.65161 3.81372 3.92203 3.98256 4.10827 4.23020 4.32003 4.40813 4.45545 4.52978 4.54418 4.63653 4.71603 4.76634 4.79471 4.85103 4.94006 5.07153 5.10540 5.15719 5.17304 5.34608 5.44629 5.51513 5.52301 5.61746 5.68542 5.76162 6.40526 6.63764 6.81684 7.15663 7.33720 7.88381 8.40048 9.20716 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.019029 B = 0.002757 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.109735 B =10152.816764 C =10865.062590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.159 3.841 3 H 0.070 0.930 4 C -0.117 4.117 5 C 0.164 3.836 6 H 0.062 0.938 7 N -0.710 5.710 8 C 0.514 3.486 9 O -0.579 6.579 10 C -0.103 4.103 11 C -0.025 4.025 12 C -0.146 4.146 13 C 0.095 3.905 14 N -0.495 5.495 15 C 0.100 3.900 16 C -0.092 4.092 17 Cl -0.058 7.058 18 C -0.131 4.131 19 C 0.186 3.814 20 N -0.600 5.600 21 C -0.256 4.256 22 H 0.073 0.927 23 C -0.054 4.054 24 N -0.937 5.937 25 Si 0.964 3.036 26 H -0.287 1.287 27 H -0.266 1.266 28 H -0.298 1.298 29 H 0.032 0.968 30 H 0.076 0.924 31 H 0.026 0.974 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.416 0.584 35 H 0.124 0.876 36 H 0.153 0.847 37 H 0.175 0.825 38 H 0.193 0.807 39 H 0.173 0.827 40 H 0.039 0.961 41 H 0.059 0.941 42 H -0.012 1.012 43 H 0.050 0.950 44 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.596 -7.106 24.372 25.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.052 3.948 3 H 0.088 0.912 4 C -0.156 4.156 5 C 0.059 3.941 6 H 0.080 0.920 7 N -0.362 5.362 8 C 0.301 3.699 9 O -0.458 6.458 10 C -0.142 4.142 11 C -0.034 4.034 12 C -0.166 4.166 13 C -0.061 4.061 14 N -0.204 5.204 15 C -0.057 4.057 16 C -0.121 4.121 17 Cl -0.029 7.029 18 C -0.171 4.171 19 C 0.059 3.941 20 N -0.322 5.322 21 C -0.387 4.387 22 H 0.091 0.909 23 C -0.249 4.249 24 N -0.583 5.583 25 Si 0.792 3.208 26 H -0.214 1.214 27 H -0.190 1.190 28 H -0.224 1.224 29 H 0.052 0.948 30 H 0.095 0.905 31 H 0.045 0.955 32 H 0.113 0.887 33 H 0.092 0.908 34 H 0.253 0.747 35 H 0.142 0.858 36 H 0.171 0.829 37 H 0.192 0.808 38 H 0.209 0.791 39 H 0.190 0.810 40 H 0.058 0.942 41 H 0.078 0.922 42 H 0.006 0.994 43 H 0.068 0.932 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 0.525 -8.202 23.833 25.211 hybrid contribution 1.230 0.734 -1.742 2.255 sum 1.755 -7.469 22.091 23.386 Atomic orbital electron populations 1.22195 0.98311 1.00191 1.00545 1.20636 0.92154 0.95572 0.86387 0.91179 1.22054 1.01965 0.92820 0.98806 1.20661 0.98144 0.92090 0.83219 0.91999 1.45998 1.35450 1.26893 1.27812 1.20834 0.82336 0.80486 0.86227 1.90750 1.30254 1.66134 1.58653 1.20823 1.00835 0.94823 0.97705 1.19925 0.96127 0.92995 0.94348 1.22421 0.93753 1.01807 0.98570 1.23418 0.98959 0.87380 0.96350 1.67834 1.16075 1.28545 1.07946 1.22953 0.89742 0.98217 0.94813 1.22155 0.94712 0.97231 0.97957 1.98387 1.43565 1.98075 1.62887 1.22305 1.00228 0.98066 0.96543 1.20386 0.95271 0.83763 0.94677 1.44368 1.64240 1.03470 1.20116 1.19540 1.21905 1.09737 0.87486 0.90944 1.25791 0.99618 1.00812 0.98665 1.70214 1.33753 1.37538 1.16779 0.85315 0.79760 0.76852 0.78852 1.21427 1.19030 1.22444 0.94844 0.90521 0.95503 0.88675 0.90783 0.74685 0.85849 0.82887 0.80758 0.79053 0.81031 0.94216 0.92239 0.99421 0.93161 0.94388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.68 9.02 71.98 0.65 -5.03 16 2 C 0.16 6.06 3.27 44.83 0.15 6.20 16 3 H 0.07 2.60 7.93 -2.39 -0.02 2.58 16 4 C -0.12 -3.34 4.99 30.53 0.15 -3.19 16 5 C 0.16 5.19 2.21 45.02 0.10 5.29 16 6 H 0.06 2.32 5.93 -2.38 -0.01 2.30 16 7 N -0.71 -16.14 5.08 -442.40 -2.25 -18.39 16 8 C 0.51 12.68 7.79 87.66 0.68 13.36 16 9 O -0.58 -20.52 15.70 -3.02 -0.05 -20.57 16 10 C -0.10 -1.54 5.42 29.10 0.16 -1.38 16 11 C -0.02 -0.47 4.41 -19.65 -0.09 -0.56 16 12 C -0.15 -2.21 9.80 22.36 0.22 -1.99 16 13 C 0.10 1.56 11.18 84.67 0.95 2.50 16 14 N -0.49 -10.70 10.36 -195.75 -2.03 -12.73 16 15 C 0.10 2.16 10.99 84.72 0.93 3.09 16 16 C -0.09 -2.02 6.34 22.42 0.14 -1.88 16 17 Cl -0.06 -1.31 27.58 -2.72 -0.08 -1.39 16 18 C -0.13 -5.20 5.65 30.67 0.17 -5.02 16 19 C 0.19 9.28 4.90 86.37 0.42 9.70 16 20 N -0.60 -29.24 2.71 -676.05 -1.83 -31.07 16 21 C -0.26 -13.81 9.58 84.03 0.81 -13.00 16 22 H 0.07 3.73 7.89 -2.91 -0.02 3.71 16 23 C -0.05 -3.01 4.90 84.86 0.42 -2.60 16 24 N -0.94 -56.59 11.20 21.65 0.24 -56.35 16 25 Si 0.96 44.96 29.59 68.60 2.03 46.99 16 26 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 27 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 28 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 29 H 0.03 1.33 5.74 -2.39 -0.01 1.31 16 30 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 33 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.42 6.13 8.60 -92.71 -0.80 5.33 16 35 H 0.12 1.58 7.24 -2.39 -0.02 1.56 16 36 H 0.15 0.97 8.07 -2.39 -0.02 0.95 16 37 H 0.18 1.42 8.06 -2.91 -0.02 1.39 16 38 H 0.19 1.78 8.06 -2.91 -0.02 1.75 16 39 H 0.17 3.12 8.06 -2.91 -0.02 3.09 16 40 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 42 H -0.01 -0.68 7.52 -2.39 -0.02 -0.70 16 43 H 0.05 2.88 6.03 -2.39 -0.01 2.86 16 44 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -75.93 370.28 2.13 -73.80 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 0.23 Total: 14.20 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: 5.86 Total: 5.51 kcal Atomic # 7 Polarization: -112.67 SS G_CDS: -5.86 Total: -118.54 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -0.05 Total: -20.57 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -0.08 Total: -1.39 kcal Total: -75.93 2.13 -73.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947721975.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.872 kcal (2) G-P(sol) polarization free energy of solvation -75.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds