Wall clock time and date at job start Tue Mar 31 2020 20:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.44683 * 2 1 4 4 C 1.53042 * 109.45798 * 240.03758 * 2 1 3 5 5 C 1.53187 * 109.31230 * 178.60869 * 4 2 1 6 6 N 1.46930 * 108.77408 * 54.63635 * 5 4 2 7 7 C 1.36940 * 120.62863 * 126.36785 * 6 5 4 8 8 H 1.08002 * 119.99485 * 207.68289 * 7 6 5 9 9 C 1.38811 * 120.00181 * 27.68623 * 7 6 5 10 10 N 1.31623 * 119.99860 * 17.37097 * 9 7 6 11 11 Si 1.86801 * 120.00022 * 197.37175 * 9 7 6 12 12 H 1.48504 * 109.47121 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47065 * 119.99825 * 11 9 7 14 14 H 1.48501 * 109.47024 * 240.00007 * 11 9 7 15 15 C 1.46922 * 118.73725 * 306.39163 * 6 5 4 16 16 C 1.53043 * 109.46194 * 119.97119 * 2 1 3 17 17 H 1.09002 * 109.49817 * 61.40152 * 16 2 1 18 18 N 1.46495 * 109.49445 * 301.33635 * 16 2 1 19 19 C 1.34776 * 120.00144 * 155.00246 * 18 16 2 20 20 O 1.21288 * 119.99753 * 0.02562 * 19 18 16 21 21 C 1.50695 * 120.00774 * 179.97438 * 19 18 16 22 22 C 1.50696 * 109.47690 * 180.02562 * 21 19 18 23 23 C 1.38653 * 120.79770 * 99.99921 * 22 21 19 24 24 C 1.38189 * 119.17638 * 179.97438 * 23 22 21 25 25 N 1.31879 * 120.79547 * 0.02562 * 24 23 22 26 26 C 1.31846 * 121.74049 * 359.97438 * 25 24 23 27 27 C 1.38356 * 120.74186 * 359.74816 * 26 25 24 28 28 Cl 1.73601 * 120.42976 * 180.28493 * 27 26 25 29 29 H 1.09003 * 109.47229 * 300.02387 * 1 2 3 30 30 H 1.08996 * 109.47668 * 60.03398 * 1 2 3 31 31 H 1.09004 * 109.46859 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.50131 * 298.56550 * 4 2 1 33 33 H 1.09012 * 109.49524 * 58.66389 * 4 2 1 34 34 H 1.09003 * 109.59110 * 174.42318 * 5 4 2 35 35 H 1.08996 * 109.59288 * 294.70891 * 5 4 2 36 36 H 0.97001 * 119.99712 * 180.02562 * 10 9 7 37 37 H 1.08999 * 109.59068 * 293.81341 * 15 6 5 38 38 H 1.09009 * 109.58591 * 173.39322 * 15 6 5 39 39 H 0.96997 * 120.00393 * 335.00126 * 18 16 2 40 40 H 1.08999 * 109.46708 * 59.99759 * 21 19 18 41 41 H 1.09005 * 109.47204 * 300.00585 * 21 19 18 42 42 H 1.08001 * 120.40738 * 359.95631 * 23 22 21 43 43 H 1.08001 * 119.59842 * 179.97438 * 24 23 22 44 44 H 1.07995 * 119.62994 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0398 -0.7207 -1.2502 5 6 3.5713 -0.6884 -1.2644 6 7 4.0679 -1.2487 -0.0002 7 6 4.9758 -2.2738 -0.0004 8 1 5.0086 -2.9661 0.8280 9 6 5.8539 -2.4232 -1.0650 10 7 6.0602 -1.4213 -1.8934 11 14 6.7426 -4.0460 -1.3222 12 1 6.3405 -5.0042 -0.2612 13 1 6.3849 -4.6009 -2.6524 14 1 8.2093 -3.8229 -1.2569 15 6 3.5714 -0.6885 1.2641 16 6 2.0399 -0.7209 1.2500 17 1 1.6974 -1.7556 1.2385 18 7 1.5256 -0.0489 2.4459 19 6 1.3972 -0.7324 3.6003 20 8 1.7078 -1.9038 3.6492 21 6 0.8687 -0.0412 4.8307 22 6 0.8245 -1.0190 5.9765 23 6 1.8219 -1.0296 6.9395 24 6 1.7477 -1.9403 7.9762 25 7 0.7444 -2.7925 8.0557 26 6 -0.2219 -2.8120 7.1589 27 6 -0.2182 -1.9263 6.0960 28 17 -1.4984 -1.9542 4.9239 29 1 -0.3634 0.5142 0.8898 30 1 -0.3634 0.5133 -0.8902 31 1 -0.3633 -1.0277 0.0005 32 1 1.6978 -1.7556 -1.2385 33 1 1.6571 -0.2205 -2.1399 34 1 3.9416 -1.2843 -2.0987 35 1 3.9142 0.3408 -1.3700 36 1 6.6735 -1.5259 -2.6376 37 1 3.9143 0.3409 1.3673 38 1 3.9418 -1.2846 2.0982 39 1 1.2775 0.8880 2.4069 40 1 -0.1356 0.3338 4.6335 41 1 1.5232 0.7914 5.0890 42 1 2.6467 -0.3349 6.8800 43 1 2.5211 -1.9549 8.7299 44 1 -1.0272 -3.5249 7.2571 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968331031.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:03 Heat of formation + Delta-G solvation = 5.620127 kcal Electronic energy + Delta-G solvation = -27125.207196 eV Core-core repulsion = 23296.561761 eV Total energy + Delta-G solvation = -3828.645435 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.69499 -39.58666 -37.69868 -36.81381 -34.51689 -34.02630 -33.01808 -31.27641 -31.11279 -29.66559 -28.25144 -27.13024 -24.12780 -23.79944 -23.20699 -22.00504 -21.05968 -20.21420 -19.37144 -17.23011 -17.13836 -16.93217 -16.74520 -16.25587 -15.51436 -15.00598 -14.66913 -14.48521 -14.23070 -13.81580 -13.76489 -13.53476 -13.41159 -13.23397 -13.01048 -12.67674 -12.46970 -12.19623 -12.03879 -11.87378 -11.65749 -11.50263 -11.42608 -11.04194 -10.81171 -10.66689 -10.27595 -10.16409 -10.08772 -9.89440 -9.83846 -9.79871 -9.64377 -9.41480 -9.15093 -8.81726 -8.40248 -6.67969 -5.78697 -3.20560 0.70901 0.85087 1.84034 2.77978 3.21999 3.39016 3.47004 3.50898 3.56240 4.16065 4.17997 4.36340 4.52006 4.66171 4.83932 4.96382 5.05222 5.11802 5.23428 5.27261 5.34049 5.37572 5.46183 5.54868 5.60274 5.82113 5.88229 5.94959 6.05332 6.16127 6.21001 6.24583 6.27931 6.54729 6.61458 6.66281 6.71857 6.81993 6.98702 7.34712 7.59391 7.64281 7.69948 7.83522 8.39224 8.46895 9.22113 9.84442 10.39716 11.29996 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.013519 B = 0.003211 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.622578 B = 8717.358504 C = 9907.718519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.091 4.091 3 H 0.067 0.933 4 C -0.134 4.134 5 C 0.167 3.833 6 N -0.587 5.587 7 C -0.249 4.249 8 H 0.067 0.933 9 C 0.003 3.997 10 N -0.904 5.904 11 Si 0.901 3.099 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.290 1.290 15 C 0.143 3.857 16 C 0.134 3.866 17 H 0.086 0.914 18 N -0.719 5.719 19 C 0.515 3.485 20 O -0.524 6.524 21 C -0.112 4.112 22 C -0.009 4.009 23 C -0.150 4.150 24 C 0.102 3.898 25 N -0.473 5.473 26 C 0.113 3.887 27 C -0.073 4.073 28 Cl -0.051 7.051 29 H 0.047 0.953 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.089 0.911 35 H 0.018 0.982 36 H 0.253 0.747 37 H 0.016 0.984 38 H 0.057 0.943 39 H 0.394 0.606 40 H 0.109 0.891 41 H 0.110 0.890 42 H 0.144 0.856 43 H 0.163 0.837 44 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.996 6.923 14.584 22.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 H 0.085 0.915 4 C -0.173 4.173 5 C 0.042 3.958 6 N -0.310 5.310 7 C -0.379 4.379 8 H 0.084 0.916 9 C -0.196 4.196 10 N -0.548 5.548 11 Si 0.731 3.269 12 H -0.202 1.202 13 H -0.215 1.215 14 H -0.217 1.217 15 C 0.015 3.985 16 C 0.029 3.971 17 H 0.104 0.896 18 N -0.370 5.370 19 C 0.299 3.701 20 O -0.400 6.400 21 C -0.152 4.152 22 C -0.018 4.018 23 C -0.169 4.169 24 C -0.055 4.055 25 N -0.182 5.182 26 C -0.045 4.045 27 C -0.102 4.102 28 Cl -0.022 7.022 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.107 0.893 35 H 0.037 0.963 36 H 0.063 0.937 37 H 0.034 0.966 38 H 0.075 0.925 39 H 0.228 0.772 40 H 0.127 0.873 41 H 0.128 0.872 42 H 0.162 0.838 43 H 0.181 0.819 44 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -14.769 5.450 15.062 21.788 hybrid contribution 0.329 0.361 -1.101 1.204 sum -14.440 5.811 13.962 20.910 Atomic orbital electron populations 1.21848 0.96029 1.01548 1.00671 1.21302 0.94527 0.99629 0.95515 0.91504 1.22250 1.00667 0.99557 0.94862 1.20838 0.87309 0.97305 0.90393 1.43997 1.48104 1.39780 0.99124 1.19261 1.09668 1.02785 1.06182 0.91572 1.25005 0.97216 0.97506 0.99838 1.70050 1.37841 1.28979 1.17971 0.86235 0.79087 0.83774 0.77830 1.20164 1.21509 1.21720 1.21178 0.90133 0.96520 0.90675 1.21765 0.96627 0.96938 0.81807 0.89607 1.46067 1.66261 1.14150 1.10508 1.20072 0.78632 0.87339 0.84029 1.90780 1.48918 1.15906 1.84376 1.20777 1.04737 0.97969 0.91696 1.19620 0.92544 0.94706 0.94931 1.22075 0.98784 1.01178 0.94911 1.22840 0.95507 0.90340 0.96771 1.67796 1.01964 1.22002 1.26397 1.22738 0.97027 0.95901 0.88804 1.21948 0.93444 1.00264 0.94533 1.98382 1.48589 1.97737 1.57515 0.93426 0.92999 0.92975 0.92444 0.92736 0.89256 0.96349 0.93726 0.96587 0.92474 0.77242 0.87302 0.87168 0.83780 0.81945 0.81922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.02 37.16 0.34 -1.48 16 2 C -0.09 -1.40 2.27 -90.58 -0.21 -1.61 16 3 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 4 C -0.13 -2.45 5.36 -26.61 -0.14 -2.60 16 5 C 0.17 3.91 5.31 -3.71 -0.02 3.89 16 6 N -0.59 -14.81 2.99 -172.32 -0.52 -15.33 16 7 C -0.25 -7.02 9.58 -15.06 -0.14 -7.16 16 8 H 0.07 1.89 7.89 -52.49 -0.41 1.48 16 9 C 0.00 0.07 4.91 -17.43 -0.09 -0.01 16 10 N -0.90 -26.21 11.19 55.49 0.62 -25.58 16 11 Si 0.90 22.12 29.59 -169.99 -5.03 17.09 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 14 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 15 C 0.14 3.05 6.09 -3.71 -0.02 3.03 16 16 C 0.13 2.31 2.07 -67.81 -0.14 2.17 16 17 H 0.09 1.76 7.58 -51.93 -0.39 1.36 16 18 N -0.72 -9.49 4.37 -53.69 -0.23 -9.72 16 19 C 0.51 7.19 7.69 -10.99 -0.08 7.11 16 20 O -0.52 -9.88 15.64 5.55 0.09 -9.79 16 21 C -0.11 -1.07 5.35 -29.04 -0.16 -1.22 16 22 C -0.01 -0.10 4.45 -104.29 -0.46 -0.56 16 23 C -0.15 -1.46 9.78 -39.45 -0.39 -1.84 16 24 C 0.10 1.01 11.18 -17.55 -0.20 0.81 16 25 N -0.47 -5.54 10.36 -13.22 -0.14 -5.68 16 26 C 0.11 1.27 10.99 -17.50 -0.19 1.07 16 27 C -0.07 -0.84 6.26 -39.35 -0.25 -1.09 16 28 Cl -0.05 -0.57 27.60 -51.86 -1.43 -2.00 16 29 H 0.05 0.51 7.36 -51.93 -0.38 0.13 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.05 0.89 8.14 -51.92 -0.42 0.47 16 34 H 0.09 2.36 6.03 -51.93 -0.31 2.04 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 37 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.06 1.32 7.93 -51.92 -0.41 0.91 16 39 H 0.39 3.87 8.31 -40.82 -0.34 3.53 16 40 H 0.11 0.85 7.45 -51.93 -0.39 0.46 16 41 H 0.11 0.74 8.04 -51.93 -0.42 0.32 16 42 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 43 H 0.16 1.12 8.06 -52.49 -0.42 0.69 16 44 H 0.16 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 373.44 15.07 5.63 5.63 Total: -1.00 -33.58 373.44 -9.58 -43.16 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -6.42 Total: 1.72 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -2.15 Total: 0.50 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: -0.27 Total: -56.31 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.09 Total: -9.79 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.03 Total: 17.09 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.43 Total: -2.00 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.58 -9.58 -43.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968331031.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.785 kcal (2) G-P(sol) polarization free energy of solvation -33.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds