Wall clock time and date at job start Tue Mar 31 2020 20:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.44683 * 2 1 4 4 C 1.53042 * 109.45798 * 240.03758 * 2 1 3 5 5 C 1.53187 * 109.31230 * 178.60869 * 4 2 1 6 6 N 1.46930 * 108.77408 * 54.63635 * 5 4 2 7 7 C 1.36940 * 120.62863 * 126.36785 * 6 5 4 8 8 H 1.08002 * 119.99485 * 207.68289 * 7 6 5 9 9 C 1.38811 * 120.00181 * 27.68623 * 7 6 5 10 10 N 1.31623 * 119.99860 * 17.37097 * 9 7 6 11 11 Si 1.86801 * 120.00022 * 197.37175 * 9 7 6 12 12 H 1.48504 * 109.47121 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47065 * 119.99825 * 11 9 7 14 14 H 1.48501 * 109.47024 * 240.00007 * 11 9 7 15 15 C 1.46922 * 118.73725 * 306.39163 * 6 5 4 16 16 C 1.53043 * 109.46194 * 119.97119 * 2 1 3 17 17 H 1.09002 * 109.49817 * 61.40152 * 16 2 1 18 18 N 1.46495 * 109.49445 * 301.33635 * 16 2 1 19 19 C 1.34776 * 120.00144 * 155.00246 * 18 16 2 20 20 O 1.21288 * 119.99753 * 0.02562 * 19 18 16 21 21 C 1.50695 * 120.00774 * 179.97438 * 19 18 16 22 22 C 1.50696 * 109.47690 * 180.02562 * 21 19 18 23 23 C 1.38653 * 120.79770 * 99.99921 * 22 21 19 24 24 C 1.38189 * 119.17638 * 179.97438 * 23 22 21 25 25 N 1.31879 * 120.79547 * 0.02562 * 24 23 22 26 26 C 1.31846 * 121.74049 * 359.97438 * 25 24 23 27 27 C 1.38356 * 120.74186 * 359.74816 * 26 25 24 28 28 Cl 1.73601 * 120.42976 * 180.28493 * 27 26 25 29 29 H 1.09003 * 109.47229 * 300.02387 * 1 2 3 30 30 H 1.08996 * 109.47668 * 60.03398 * 1 2 3 31 31 H 1.09004 * 109.46859 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.50131 * 298.56550 * 4 2 1 33 33 H 1.09012 * 109.49524 * 58.66389 * 4 2 1 34 34 H 1.09003 * 109.59110 * 174.42318 * 5 4 2 35 35 H 1.08996 * 109.59288 * 294.70891 * 5 4 2 36 36 H 0.97001 * 119.99712 * 180.02562 * 10 9 7 37 37 H 1.08999 * 109.59068 * 293.81341 * 15 6 5 38 38 H 1.09009 * 109.58591 * 173.39322 * 15 6 5 39 39 H 0.96997 * 120.00393 * 335.00126 * 18 16 2 40 40 H 1.08999 * 109.46708 * 59.99759 * 21 19 18 41 41 H 1.09005 * 109.47204 * 300.00585 * 21 19 18 42 42 H 1.08001 * 120.40738 * 359.95631 * 23 22 21 43 43 H 1.08001 * 119.59842 * 179.97438 * 24 23 22 44 44 H 1.07995 * 119.62994 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0398 -0.7207 -1.2502 5 6 3.5713 -0.6884 -1.2644 6 7 4.0679 -1.2487 -0.0002 7 6 4.9758 -2.2738 -0.0004 8 1 5.0086 -2.9661 0.8280 9 6 5.8539 -2.4232 -1.0650 10 7 6.0602 -1.4213 -1.8934 11 14 6.7426 -4.0460 -1.3222 12 1 6.3405 -5.0042 -0.2612 13 1 6.3849 -4.6009 -2.6524 14 1 8.2093 -3.8229 -1.2569 15 6 3.5714 -0.6885 1.2641 16 6 2.0399 -0.7209 1.2500 17 1 1.6974 -1.7556 1.2385 18 7 1.5256 -0.0489 2.4459 19 6 1.3972 -0.7324 3.6003 20 8 1.7078 -1.9038 3.6492 21 6 0.8687 -0.0412 4.8307 22 6 0.8245 -1.0190 5.9765 23 6 1.8219 -1.0296 6.9395 24 6 1.7477 -1.9403 7.9762 25 7 0.7444 -2.7925 8.0557 26 6 -0.2219 -2.8120 7.1589 27 6 -0.2182 -1.9263 6.0960 28 17 -1.4984 -1.9542 4.9239 29 1 -0.3634 0.5142 0.8898 30 1 -0.3634 0.5133 -0.8902 31 1 -0.3633 -1.0277 0.0005 32 1 1.6978 -1.7556 -1.2385 33 1 1.6571 -0.2205 -2.1399 34 1 3.9416 -1.2843 -2.0987 35 1 3.9142 0.3408 -1.3700 36 1 6.6735 -1.5259 -2.6376 37 1 3.9143 0.3409 1.3673 38 1 3.9418 -1.2846 2.0982 39 1 1.2775 0.8880 2.4069 40 1 -0.1356 0.3338 4.6335 41 1 1.5232 0.7914 5.0890 42 1 2.6467 -0.3349 6.8800 43 1 2.5211 -1.9549 8.7299 44 1 -1.0272 -3.5249 7.2571 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968331031.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:01 Heat of formation + Delta-G solvation = -15.939465 kcal Electronic energy + Delta-G solvation = -27126.142091 eV Core-core repulsion = 23296.561761 eV Total energy + Delta-G solvation = -3829.580330 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.57953 -40.74581 -39.15488 -37.65051 -36.18441 -34.89696 -34.43965 -33.03702 -32.03974 -30.99853 -29.45806 -28.65526 -25.90711 -24.58225 -24.38972 -23.23741 -22.68221 -21.44480 -20.85567 -18.75016 -18.19280 -17.95550 -17.82540 -17.19400 -16.91390 -16.50634 -16.11667 -15.62333 -15.40516 -15.23764 -15.08790 -14.91690 -14.72903 -14.46766 -14.17860 -13.84058 -13.63213 -13.44007 -13.19873 -13.14866 -13.01780 -12.77222 -12.70465 -12.58278 -12.29541 -12.26326 -12.01966 -11.96323 -11.66787 -11.42898 -11.24633 -11.04393 -10.61660 -10.61215 -10.50717 -10.05748 -9.94834 -8.70556 -7.92441 -5.37322 -0.07609 0.05657 1.01425 1.41260 1.43442 1.54563 1.69753 2.17447 2.48695 2.70655 3.21707 3.37080 3.46247 3.65684 3.68757 3.76599 3.92116 3.96695 4.02756 4.13331 4.23592 4.40166 4.46821 4.53176 4.55880 4.63779 4.67235 4.75022 4.79539 4.93162 4.96531 5.03049 5.07529 5.11454 5.20385 5.24615 5.45119 5.47263 5.51885 5.59620 5.61546 5.76747 6.35122 6.64171 6.81545 7.11366 7.35733 7.81593 8.30699 9.13178 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.013519 B = 0.003211 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.622578 B = 8717.358504 C = 9907.718519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.082 4.082 3 H 0.083 0.917 4 C -0.124 4.124 5 C 0.173 3.827 6 N -0.607 5.607 7 C -0.266 4.266 8 H 0.051 0.949 9 C -0.042 4.042 10 N -0.928 5.928 11 Si 0.962 3.038 12 H -0.276 1.276 13 H -0.284 1.284 14 H -0.286 1.286 15 C 0.146 3.854 16 C 0.153 3.847 17 H 0.051 0.949 18 N -0.705 5.705 19 C 0.513 3.487 20 O -0.578 6.578 21 C -0.101 4.101 22 C -0.025 4.025 23 C -0.151 4.151 24 C 0.094 3.906 25 N -0.494 5.494 26 C 0.100 3.900 27 C -0.087 4.087 28 Cl -0.054 7.054 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.039 0.961 32 H 0.042 0.958 33 H 0.081 0.919 34 H 0.053 0.947 35 H 0.006 0.994 36 H 0.252 0.748 37 H 0.023 0.977 38 H 0.029 0.971 39 H 0.416 0.584 40 H 0.132 0.868 41 H 0.148 0.852 42 H 0.171 0.829 43 H 0.190 0.810 44 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.240 8.729 15.344 23.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.101 4.101 3 H 0.101 0.899 4 C -0.163 4.163 5 C 0.047 3.953 6 N -0.331 5.331 7 C -0.397 4.397 8 H 0.069 0.931 9 C -0.238 4.238 10 N -0.573 5.573 11 Si 0.790 3.210 12 H -0.201 1.201 13 H -0.210 1.210 14 H -0.213 1.213 15 C 0.019 3.981 16 C 0.046 3.954 17 H 0.069 0.931 18 N -0.357 5.357 19 C 0.300 3.700 20 O -0.456 6.456 21 C -0.140 4.140 22 C -0.034 4.034 23 C -0.170 4.170 24 C -0.062 4.062 25 N -0.204 5.204 26 C -0.057 4.057 27 C -0.116 4.116 28 Cl -0.025 7.025 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.100 0.900 34 H 0.071 0.929 35 H 0.024 0.976 36 H 0.061 0.939 37 H 0.041 0.959 38 H 0.047 0.953 39 H 0.254 0.746 40 H 0.150 0.850 41 H 0.165 0.835 42 H 0.189 0.811 43 H 0.207 0.793 44 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -16.056 7.308 15.841 23.709 hybrid contribution 0.767 -0.197 -1.274 1.500 sum -15.288 7.111 14.567 22.282 Atomic orbital electron populations 1.21766 0.93006 1.01480 1.02924 1.21228 0.96853 0.99419 0.92643 0.89875 1.22087 0.96724 0.99678 0.97844 1.20695 0.90617 0.95428 0.88519 1.44217 1.48211 1.39719 1.00966 1.19395 1.10511 1.03681 1.06086 0.93145 1.25665 0.98117 1.00341 0.99634 1.70167 1.38449 1.30439 1.18279 0.85301 0.77935 0.80158 0.77632 1.20089 1.21010 1.21316 1.21223 0.93000 0.95748 0.88169 1.21169 0.93520 0.96106 0.84578 0.93090 1.45817 1.65611 1.15103 1.09199 1.20856 0.77335 0.86760 0.85014 1.90770 1.51144 1.18506 1.85224 1.20811 1.06569 0.98007 0.88642 1.19922 0.92705 0.95068 0.95743 1.22433 0.98972 1.01334 0.94277 1.23373 0.95537 0.89793 0.97489 1.67823 1.02690 1.22935 1.26930 1.22984 0.97498 0.96320 0.88940 1.22106 0.93931 1.00861 0.94698 1.98372 1.48721 1.97785 1.57619 0.90921 0.91044 0.94220 0.93901 0.90010 0.92873 0.97590 0.93851 0.95879 0.95271 0.74621 0.85026 0.83467 0.81139 0.79280 0.80821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 9.02 71.98 0.65 -2.27 16 2 C -0.08 -2.37 2.27 -10.77 -0.02 -2.40 16 3 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 4 C -0.12 -4.45 5.36 30.67 0.16 -4.28 16 5 C 0.17 8.23 5.31 86.36 0.46 8.68 16 6 N -0.61 -31.56 2.99 -699.10 -2.09 -33.65 16 7 C -0.27 -15.54 9.58 84.03 0.81 -14.74 16 8 H 0.05 3.03 7.89 -2.91 -0.02 3.00 16 9 C -0.04 -2.39 4.91 84.86 0.42 -1.98 16 10 N -0.93 -55.08 11.19 21.65 0.24 -54.83 16 11 Si 0.96 46.51 29.59 68.60 2.03 48.54 16 12 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 13 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 14 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 15 C 0.15 6.31 6.09 86.36 0.53 6.84 16 16 C 0.15 5.19 2.07 45.07 0.09 5.28 16 17 H 0.05 2.13 7.58 -2.39 -0.02 2.11 16 18 N -0.70 -17.01 4.37 -442.17 -1.93 -18.94 16 19 C 0.51 13.48 7.69 87.66 0.67 14.15 16 20 O -0.58 -21.82 15.64 -3.05 -0.05 -21.87 16 21 C -0.10 -1.62 5.35 29.10 0.16 -1.46 16 22 C -0.03 -0.51 4.45 -19.65 -0.09 -0.60 16 23 C -0.15 -2.61 9.78 22.36 0.22 -2.39 16 24 C 0.09 1.72 11.18 84.67 0.95 2.67 16 25 N -0.49 -11.25 10.36 -195.75 -2.03 -13.28 16 26 C 0.10 2.20 10.99 84.72 0.93 3.13 16 27 C -0.09 -1.94 6.26 22.42 0.14 -1.80 16 28 Cl -0.05 -1.15 27.60 -2.72 -0.08 -1.22 16 29 H 0.07 1.24 7.36 -2.39 -0.02 1.22 16 30 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.04 0.97 8.14 -2.38 -0.02 0.95 16 32 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 34 H 0.05 2.90 6.03 -2.39 -0.01 2.88 16 35 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 36 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 37 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.03 1.39 7.93 -2.38 -0.02 1.37 16 39 H 0.42 6.49 8.31 -92.71 -0.77 5.72 16 40 H 0.13 1.54 7.45 -2.39 -0.02 1.52 16 41 H 0.15 1.28 8.04 -2.38 -0.02 1.26 16 42 H 0.17 1.92 8.06 -2.91 -0.02 1.89 16 43 H 0.19 2.20 8.06 -2.91 -0.02 2.17 16 44 H 0.17 3.14 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -77.26 373.44 2.41 -74.85 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 0.24 Total: 11.56 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: 6.07 Total: 8.85 kcal Atomic # 7 Polarization: -114.90 SS G_CDS: -5.81 Total: -120.71 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -0.05 Total: -21.87 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -0.08 Total: -1.22 kcal Total: -77.26 2.41 -74.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968331031.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.906 kcal (2) G-P(sol) polarization free energy of solvation -77.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds