Wall clock time and date at job start Tue Mar 31 2020 20:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.46369 * 2 1 4 4 C 1.53044 * 109.46294 * 119.96126 * 2 1 3 5 5 C 1.52763 * 109.38418 * 181.25931 * 4 2 1 6 6 N 1.46929 * 109.00553 * 305.58543 * 5 4 2 7 7 C 1.36940 * 120.62778 * 233.58054 * 6 5 4 8 8 H 1.07996 * 119.99733 * 27.44937 * 7 6 5 9 9 C 1.38810 * 120.00055 * 207.71952 * 7 6 5 10 10 N 1.31618 * 119.99641 * 16.99717 * 9 7 6 11 11 Si 1.86794 * 120.00176 * 196.99896 * 9 7 6 12 12 H 1.48509 * 109.47042 * 359.97438 * 11 9 7 13 13 H 1.48496 * 109.47288 * 119.99906 * 11 9 7 14 14 H 1.48498 * 109.46944 * 240.00280 * 11 9 7 15 15 C 1.46924 * 118.74051 * 53.31136 * 6 5 4 16 16 C 1.53041 * 109.45913 * 240.02643 * 2 1 3 17 17 H 1.09004 * 109.49914 * 298.57040 * 16 2 1 18 18 N 1.46496 * 109.52362 * 58.64459 * 16 2 1 19 19 C 1.34784 * 120.00391 * 204.85321 * 18 16 2 20 20 O 1.21277 * 119.99429 * 0.02562 * 19 18 16 21 21 C 1.50700 * 120.00190 * 179.97438 * 19 18 16 22 22 C 1.50705 * 109.46801 * 180.02562 * 21 19 18 23 23 C 1.38651 * 120.79587 * 264.72368 * 22 21 19 24 24 C 1.38183 * 119.17703 * 179.73388 * 23 22 21 25 25 N 1.31887 * 120.79411 * 0.55576 * 24 23 22 26 26 C 1.31846 * 121.73566 * 359.71472 * 25 24 23 27 27 C 1.38349 * 120.74757 * 0.02562 * 26 25 24 28 28 Cl 1.73602 * 120.43430 * 179.97438 * 27 26 25 29 29 H 1.08998 * 109.47268 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46612 * 299.97149 * 1 2 3 31 31 H 1.08993 * 109.47362 * 59.97071 * 1 2 3 32 32 H 1.09001 * 109.49447 * 301.33080 * 4 2 1 33 33 H 1.08995 * 109.49779 * 61.40039 * 4 2 1 34 34 H 1.08996 * 109.50927 * 185.70091 * 5 4 2 35 35 H 1.08998 * 109.43451 * 65.41912 * 5 4 2 36 36 H 0.97004 * 119.99499 * 179.97438 * 10 9 7 37 37 H 1.09005 * 109.58644 * 66.42563 * 15 6 5 38 38 H 1.08994 * 109.58933 * 186.70992 * 15 6 5 39 39 H 0.97006 * 120.00078 * 24.85818 * 18 16 2 40 40 H 1.08997 * 109.47185 * 300.00161 * 21 19 18 41 41 H 1.09000 * 109.46876 * 60.00302 * 21 19 18 42 42 H 1.08008 * 120.40876 * 359.97314 * 23 22 21 43 43 H 1.07995 * 119.60511 * 180.27275 * 24 23 22 44 44 H 1.07997 * 119.62389 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7206 1.2501 5 6 3.5672 -0.6922 1.2642 6 7 4.0678 -1.2489 0.0000 7 6 4.9757 -2.2741 0.0001 8 1 5.0081 -2.9665 0.8282 9 6 5.8581 -2.4198 -1.0614 10 7 6.0623 -1.4176 -1.8898 11 14 6.7558 -4.0383 -1.3144 12 1 6.3548 -4.9977 -0.2540 13 1 6.4055 -4.5959 -2.6453 14 1 8.2211 -3.8078 -1.2443 15 6 3.5713 -0.6888 -1.2643 16 6 2.0398 -0.7209 -1.2500 17 1 1.6977 -1.7558 -1.2381 18 7 1.5255 -0.0497 -2.4463 19 6 1.4000 -0.7332 -3.6012 20 8 1.7126 -1.9040 -3.6498 21 6 0.8704 -0.0428 -4.8316 22 6 0.8289 -1.0207 -5.9776 23 6 1.8742 -1.0951 -6.8855 24 6 1.8038 -2.0079 -7.9205 25 7 0.7541 -2.7946 -8.0568 26 6 -0.2608 -2.7485 -7.2165 27 6 -0.2589 -1.8637 -6.1529 28 17 -1.5999 -1.8094 -5.0517 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5134 0.8903 31 1 -0.3634 0.5142 -0.8896 32 1 1.6573 -0.2204 2.1398 33 1 1.6974 -1.7553 1.2388 34 1 3.9347 -1.2905 2.0979 35 1 3.9098 0.3370 1.3714 36 1 6.6792 -1.5193 -2.6314 37 1 3.9142 0.3407 -1.3675 38 1 3.9436 -1.2833 -2.0985 39 1 1.2752 0.8867 -2.4073 40 1 -0.1352 0.3290 -4.6352 41 1 1.5226 0.7917 -5.0891 42 1 2.7346 -0.4503 -6.7827 43 1 2.6161 -2.0748 -8.6291 44 1 -1.1032 -3.4089 -7.3601 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968331032.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:09 Heat of formation + Delta-G solvation = 5.923375 kcal Electronic energy + Delta-G solvation = -27484.494423 eV Core-core repulsion = 23655.862137 eV Total energy + Delta-G solvation = -3828.632286 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.55639 -39.42815 -37.64282 -36.73771 -34.37857 -33.88162 -33.12441 -31.15706 -30.99267 -29.60872 -28.07116 -27.21329 -24.09875 -23.68010 -23.14655 -21.92829 -21.03890 -20.04308 -19.31961 -17.11178 -17.00038 -16.85265 -16.70163 -16.15510 -15.42160 -14.94479 -14.54940 -14.35435 -14.08751 -13.75539 -13.73361 -13.49809 -13.42962 -13.06041 -12.92385 -12.57005 -12.40223 -12.11477 -12.00620 -11.76544 -11.65335 -11.57919 -11.33849 -10.90998 -10.72101 -10.63204 -10.45615 -10.15149 -10.00272 -9.91971 -9.85292 -9.70417 -9.52064 -9.29621 -9.04315 -8.53289 -8.43647 -6.66369 -5.76756 -3.19371 0.82590 0.98267 1.92103 2.98765 3.36914 3.42259 3.50071 3.51159 3.70891 4.29194 4.30192 4.49723 4.53618 4.79481 4.99033 5.09477 5.18108 5.19859 5.24648 5.37155 5.38800 5.48022 5.51268 5.58659 5.68392 5.89752 5.96472 5.99058 6.02126 6.10594 6.23417 6.36862 6.38326 6.45030 6.52368 6.72327 6.75094 6.93959 6.95633 7.28315 7.70759 7.71519 7.82240 7.90164 8.47164 8.61893 9.22643 9.86523 10.40985 11.31461 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.010555 B = 0.004203 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2652.222180 B = 6660.906281 C = 8536.800620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 H 0.066 0.934 4 C -0.126 4.126 5 C 0.142 3.858 6 N -0.588 5.588 7 C -0.255 4.255 8 H 0.067 0.933 9 C 0.007 3.993 10 N -0.900 5.900 11 Si 0.900 3.100 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.290 1.290 15 C 0.167 3.833 16 C 0.125 3.875 17 H 0.081 0.919 18 N -0.718 5.718 19 C 0.516 3.484 20 O -0.522 6.522 21 C -0.112 4.112 22 C -0.006 4.006 23 C -0.146 4.146 24 C 0.103 3.897 25 N -0.474 5.474 26 C 0.112 3.888 27 C -0.075 4.075 28 Cl -0.054 7.054 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.048 0.952 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.017 0.983 36 H 0.252 0.748 37 H 0.016 0.984 38 H 0.095 0.905 39 H 0.392 0.608 40 H 0.107 0.893 41 H 0.110 0.890 42 H 0.145 0.855 43 H 0.163 0.837 44 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.811 6.890 -7.219 17.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 H 0.085 0.915 4 C -0.165 4.165 5 C 0.016 3.984 6 N -0.311 5.311 7 C -0.384 4.384 8 H 0.084 0.916 9 C -0.192 4.192 10 N -0.544 5.544 11 Si 0.730 3.270 12 H -0.202 1.202 13 H -0.214 1.214 14 H -0.217 1.217 15 C 0.040 3.960 16 C 0.020 3.980 17 H 0.099 0.901 18 N -0.368 5.368 19 C 0.300 3.700 20 O -0.397 6.397 21 C -0.152 4.152 22 C -0.015 4.015 23 C -0.166 4.166 24 C -0.054 4.054 25 N -0.183 5.183 26 C -0.046 4.046 27 C -0.104 4.104 28 Cl -0.025 7.025 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.035 0.965 36 H 0.062 0.938 37 H 0.034 0.966 38 H 0.113 0.887 39 H 0.225 0.775 40 H 0.125 0.875 41 H 0.128 0.872 42 H 0.163 0.837 43 H 0.181 0.819 44 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -14.581 5.425 -7.964 17.477 hybrid contribution 0.330 0.353 0.656 0.814 sum -14.251 5.778 -7.309 17.026 Atomic orbital electron populations 1.21842 0.96022 1.01545 1.00676 1.21300 0.94545 0.99639 0.95603 0.91515 1.21999 0.98965 1.00065 0.95501 1.20872 0.90854 0.96490 0.90192 1.43960 1.47987 1.39989 0.99177 1.19197 1.09557 1.03159 1.06518 0.91578 1.25006 0.97126 0.97377 0.99683 1.70024 1.37434 1.29021 1.17903 0.86259 0.78960 0.83783 0.77998 1.20185 1.21449 1.21731 1.21093 0.86502 0.97375 0.91047 1.21986 0.98267 0.96357 0.81375 0.90064 1.46005 1.66288 1.14004 1.10536 1.20009 0.78709 0.87360 0.83959 1.90785 1.48605 1.16019 1.84262 1.20789 1.04612 0.98018 0.91808 1.19623 0.92252 0.94841 0.94832 1.22095 0.98569 1.00786 0.95123 1.22836 0.95592 0.90648 0.96295 1.67794 1.00951 1.22484 1.27023 1.22709 0.97181 0.95419 0.89301 1.21932 0.92088 1.00960 0.95443 1.98370 1.44117 1.97607 1.62449 0.92977 0.93173 0.93250 0.92598 0.92151 0.92642 0.96471 0.93782 0.96620 0.88699 0.77512 0.87473 0.87169 0.83699 0.81950 0.81998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.02 37.16 0.34 -1.48 16 2 C -0.09 -1.43 2.27 -90.58 -0.21 -1.63 16 3 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 4 C -0.13 -2.10 5.35 -26.83 -0.14 -2.24 16 5 C 0.14 2.92 6.49 -3.93 -0.03 2.90 16 6 N -0.59 -14.82 3.00 -172.58 -0.52 -15.34 16 7 C -0.25 -7.15 9.58 -15.06 -0.14 -7.30 16 8 H 0.07 1.82 7.88 -52.49 -0.41 1.41 16 9 C 0.01 0.20 4.92 -17.43 -0.09 0.11 16 10 N -0.90 -26.62 11.18 55.49 0.62 -26.00 16 11 Si 0.90 22.61 29.59 -169.99 -5.03 17.58 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 14 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 15 C 0.17 3.98 4.89 -3.71 -0.02 3.97 16 16 C 0.13 2.36 2.06 -67.81 -0.14 2.22 16 17 H 0.08 1.80 7.58 -51.93 -0.39 1.40 16 18 N -0.72 -10.91 4.37 -53.69 -0.23 -11.15 16 19 C 0.52 8.39 7.79 -10.98 -0.09 8.31 16 20 O -0.52 -11.22 15.70 5.56 0.09 -11.14 16 21 C -0.11 -1.30 5.42 -29.03 -0.16 -1.45 16 22 C -0.01 -0.08 4.41 -104.28 -0.46 -0.54 16 23 C -0.15 -1.75 9.80 -39.45 -0.39 -2.14 16 24 C 0.10 1.21 11.18 -17.55 -0.20 1.02 16 25 N -0.47 -6.26 10.36 -13.23 -0.14 -6.40 16 26 C 0.11 1.39 10.99 -17.50 -0.19 1.20 16 27 C -0.08 -0.97 6.34 -39.36 -0.25 -1.22 16 28 Cl -0.05 -0.65 27.58 -51.86 -1.43 -2.08 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.56 7.36 -51.93 -0.38 0.17 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.06 1.12 7.93 -51.93 -0.41 0.71 16 35 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 37 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.09 2.69 6.04 -51.93 -0.31 2.38 16 39 H 0.39 4.53 8.30 -40.82 -0.34 4.19 16 40 H 0.11 1.01 7.24 -51.93 -0.38 0.63 16 41 H 0.11 0.99 8.07 -51.93 -0.42 0.57 16 42 H 0.15 1.46 8.06 -52.48 -0.42 1.04 16 43 H 0.16 1.44 8.06 -52.49 -0.42 1.02 16 44 H 0.16 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 373.50 15.07 5.63 5.63 Total: -1.00 -34.27 373.50 -9.58 -43.85 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -6.41 Total: 3.32 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: -2.16 Total: 1.71 kcal Atomic # 7 Polarization: -58.61 SS G_CDS: -0.27 Total: -58.88 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.09 Total: -11.14 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.03 Total: 17.58 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.43 Total: -2.08 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.27 -9.58 -43.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968331032.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.770 kcal (2) G-P(sol) polarization free energy of solvation -34.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds