Wall clock time and date at job start Tue Mar 31 2020 20:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.46369 * 2 1 4 4 C 1.53044 * 109.46294 * 119.96126 * 2 1 3 5 5 C 1.52763 * 109.38418 * 181.25931 * 4 2 1 6 6 N 1.46929 * 109.00553 * 305.58543 * 5 4 2 7 7 C 1.36940 * 120.62778 * 233.58054 * 6 5 4 8 8 H 1.07996 * 119.99733 * 27.44937 * 7 6 5 9 9 C 1.38810 * 120.00055 * 207.71952 * 7 6 5 10 10 N 1.31618 * 119.99641 * 16.99717 * 9 7 6 11 11 Si 1.86794 * 120.00176 * 196.99896 * 9 7 6 12 12 H 1.48509 * 109.47042 * 359.97438 * 11 9 7 13 13 H 1.48496 * 109.47288 * 119.99906 * 11 9 7 14 14 H 1.48498 * 109.46944 * 240.00280 * 11 9 7 15 15 C 1.46924 * 118.74051 * 53.31136 * 6 5 4 16 16 C 1.53041 * 109.45913 * 240.02643 * 2 1 3 17 17 H 1.09004 * 109.49914 * 298.57040 * 16 2 1 18 18 N 1.46496 * 109.52362 * 58.64459 * 16 2 1 19 19 C 1.34784 * 120.00391 * 204.85321 * 18 16 2 20 20 O 1.21277 * 119.99429 * 0.02562 * 19 18 16 21 21 C 1.50700 * 120.00190 * 179.97438 * 19 18 16 22 22 C 1.50705 * 109.46801 * 180.02562 * 21 19 18 23 23 C 1.38651 * 120.79587 * 264.72368 * 22 21 19 24 24 C 1.38183 * 119.17703 * 179.73388 * 23 22 21 25 25 N 1.31887 * 120.79411 * 0.55576 * 24 23 22 26 26 C 1.31846 * 121.73566 * 359.71472 * 25 24 23 27 27 C 1.38349 * 120.74757 * 0.02562 * 26 25 24 28 28 Cl 1.73602 * 120.43430 * 179.97438 * 27 26 25 29 29 H 1.08998 * 109.47268 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46612 * 299.97149 * 1 2 3 31 31 H 1.08993 * 109.47362 * 59.97071 * 1 2 3 32 32 H 1.09001 * 109.49447 * 301.33080 * 4 2 1 33 33 H 1.08995 * 109.49779 * 61.40039 * 4 2 1 34 34 H 1.08996 * 109.50927 * 185.70091 * 5 4 2 35 35 H 1.08998 * 109.43451 * 65.41912 * 5 4 2 36 36 H 0.97004 * 119.99499 * 179.97438 * 10 9 7 37 37 H 1.09005 * 109.58644 * 66.42563 * 15 6 5 38 38 H 1.08994 * 109.58933 * 186.70992 * 15 6 5 39 39 H 0.97006 * 120.00078 * 24.85818 * 18 16 2 40 40 H 1.08997 * 109.47185 * 300.00161 * 21 19 18 41 41 H 1.09000 * 109.46876 * 60.00302 * 21 19 18 42 42 H 1.08008 * 120.40876 * 359.97314 * 23 22 21 43 43 H 1.07995 * 119.60511 * 180.27275 * 24 23 22 44 44 H 1.07997 * 119.62389 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7206 1.2501 5 6 3.5672 -0.6922 1.2642 6 7 4.0678 -1.2489 0.0000 7 6 4.9757 -2.2741 0.0001 8 1 5.0081 -2.9665 0.8282 9 6 5.8581 -2.4198 -1.0614 10 7 6.0623 -1.4176 -1.8898 11 14 6.7558 -4.0383 -1.3144 12 1 6.3548 -4.9977 -0.2540 13 1 6.4055 -4.5959 -2.6453 14 1 8.2211 -3.8078 -1.2443 15 6 3.5713 -0.6888 -1.2643 16 6 2.0398 -0.7209 -1.2500 17 1 1.6977 -1.7558 -1.2381 18 7 1.5255 -0.0497 -2.4463 19 6 1.4000 -0.7332 -3.6012 20 8 1.7126 -1.9040 -3.6498 21 6 0.8704 -0.0428 -4.8316 22 6 0.8289 -1.0207 -5.9776 23 6 1.8742 -1.0951 -6.8855 24 6 1.8038 -2.0079 -7.9205 25 7 0.7541 -2.7946 -8.0568 26 6 -0.2608 -2.7485 -7.2165 27 6 -0.2589 -1.8637 -6.1529 28 17 -1.5999 -1.8094 -5.0517 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5134 0.8903 31 1 -0.3634 0.5142 -0.8896 32 1 1.6573 -0.2204 2.1398 33 1 1.6974 -1.7553 1.2388 34 1 3.9347 -1.2905 2.0979 35 1 3.9098 0.3370 1.3714 36 1 6.6792 -1.5193 -2.6314 37 1 3.9142 0.3407 -1.3675 38 1 3.9436 -1.2833 -2.0985 39 1 1.2752 0.8867 -2.4073 40 1 -0.1352 0.3290 -4.6352 41 1 1.5226 0.7917 -5.0891 42 1 2.7346 -0.4503 -6.7827 43 1 2.6161 -2.0748 -8.6291 44 1 -1.1032 -3.4089 -7.3601 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968331032.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:06 Heat of formation + Delta-G solvation = -16.399044 kcal Electronic energy + Delta-G solvation = -27485.462395 eV Core-core repulsion = 23655.862137 eV Total energy + Delta-G solvation = -3829.600258 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -41.58513 -40.73275 -39.14465 -37.68068 -36.08975 -34.91209 -34.66456 -32.82977 -32.07032 -31.01761 -29.35537 -28.77855 -25.89723 -24.61647 -24.40758 -23.22603 -22.62884 -21.44467 -20.80116 -18.78592 -18.21205 -17.95627 -17.86760 -17.22868 -16.91719 -16.56223 -15.98420 -15.64151 -15.38532 -15.26862 -15.02838 -14.92641 -14.76527 -14.43366 -14.13133 -13.88961 -13.61644 -13.45892 -13.27082 -13.06158 -13.04596 -12.78208 -12.65949 -12.58339 -12.31607 -12.27311 -12.14551 -11.91227 -11.63185 -11.45636 -11.19380 -11.04260 -10.65116 -10.57284 -10.51052 -10.02762 -9.97333 -8.69648 -7.91323 -5.35965 -0.10723 0.03048 0.97445 1.37789 1.42413 1.50358 1.71599 2.21159 2.46859 2.68716 3.25280 3.34681 3.43428 3.62433 3.71097 3.83314 3.89378 3.96794 4.02503 4.18692 4.20854 4.36890 4.49752 4.50512 4.60962 4.61157 4.67866 4.73620 4.76970 4.92494 4.99390 5.05463 5.12194 5.18517 5.22657 5.31252 5.46415 5.48067 5.50060 5.53682 5.61344 5.81224 6.35428 6.66373 6.77946 7.11328 7.38825 7.84377 8.32604 9.13613 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.010555 B = 0.004203 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2652.222180 B = 6660.906281 C = 8536.800620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.085 4.085 3 H 0.082 0.918 4 C -0.117 4.117 5 C 0.136 3.864 6 N -0.610 5.610 7 C -0.264 4.264 8 H 0.065 0.935 9 C -0.046 4.046 10 N -0.927 5.927 11 Si 0.956 3.044 12 H -0.266 1.266 13 H -0.299 1.299 14 H -0.284 1.284 15 C 0.179 3.821 16 C 0.143 3.857 17 H 0.044 0.956 18 N -0.705 5.705 19 C 0.512 3.488 20 O -0.580 6.580 21 C -0.101 4.101 22 C -0.024 4.024 23 C -0.154 4.154 24 C 0.095 3.905 25 N -0.492 5.492 26 C 0.102 3.898 27 C -0.087 4.087 28 Cl -0.050 7.050 29 H 0.039 0.961 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.095 0.905 33 H 0.046 0.954 34 H 0.052 0.948 35 H 0.023 0.977 36 H 0.247 0.753 37 H 0.001 0.999 38 H 0.044 0.956 39 H 0.414 0.586 40 H 0.134 0.866 41 H 0.142 0.858 42 H 0.162 0.838 43 H 0.188 0.812 44 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.505 8.456 -6.676 19.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.104 4.104 3 H 0.100 0.900 4 C -0.156 4.156 5 C 0.011 3.989 6 N -0.334 5.334 7 C -0.394 4.394 8 H 0.083 0.917 9 C -0.242 4.242 10 N -0.573 5.573 11 Si 0.785 3.215 12 H -0.190 1.190 13 H -0.226 1.226 14 H -0.210 1.210 15 C 0.052 3.948 16 C 0.036 3.964 17 H 0.063 0.937 18 N -0.357 5.357 19 C 0.299 3.701 20 O -0.459 6.459 21 C -0.140 4.140 22 C -0.033 4.033 23 C -0.173 4.173 24 C -0.061 4.061 25 N -0.202 5.202 26 C -0.055 4.055 27 C -0.116 4.116 28 Cl -0.021 7.021 29 H 0.058 0.942 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.114 0.886 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.041 0.959 36 H 0.057 0.943 37 H 0.019 0.981 38 H 0.063 0.937 39 H 0.251 0.749 40 H 0.152 0.848 41 H 0.160 0.840 42 H 0.180 0.820 43 H 0.205 0.795 44 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -16.315 7.043 -7.392 19.246 hybrid contribution 0.873 -0.126 0.516 1.022 sum -15.442 6.917 -6.876 18.264 Atomic orbital electron populations 1.21762 0.93040 1.01462 1.02903 1.21262 0.96864 0.99431 0.92824 0.90017 1.21901 0.95741 1.00124 0.97854 1.21076 0.93596 0.96222 0.87986 1.44241 1.48036 1.39954 1.01164 1.19508 1.09626 1.03990 1.06326 0.91722 1.25690 0.98494 1.00055 0.99917 1.70157 1.38304 1.30535 1.18337 0.85373 0.78137 0.80699 0.77336 1.19014 1.22630 1.21033 1.20807 0.89824 0.95029 0.89128 1.21423 0.94680 0.95652 0.84600 0.93740 1.45809 1.65462 1.14998 1.09445 1.20838 0.77410 0.86779 0.85106 1.90766 1.51078 1.18808 1.85210 1.20806 1.06467 0.97965 0.88791 1.19895 0.92556 0.95377 0.95438 1.22385 0.98873 1.01075 0.95014 1.23311 0.95877 0.90142 0.96745 1.67832 1.01580 1.23152 1.27614 1.23040 0.97643 0.95637 0.89197 1.22073 0.92515 1.01252 0.95739 1.98362 1.43813 1.97607 1.62310 0.94221 0.90526 0.91496 0.88633 0.93490 0.92898 0.95946 0.94347 0.98091 0.93734 0.74889 0.84841 0.84035 0.82049 0.79471 0.80311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 9.02 71.98 0.65 -2.25 16 2 C -0.08 -2.42 2.27 -10.77 -0.02 -2.45 16 3 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 4 C -0.12 -3.64 5.35 30.53 0.16 -3.48 16 5 C 0.14 5.50 6.49 86.22 0.56 6.06 16 6 N -0.61 -31.37 3.00 -699.93 -2.10 -33.47 16 7 C -0.26 -15.21 9.58 84.03 0.81 -14.41 16 8 H 0.07 3.64 7.88 -2.91 -0.02 3.62 16 9 C -0.05 -2.69 4.92 84.86 0.42 -2.27 16 10 N -0.93 -56.87 11.18 21.65 0.24 -56.62 16 11 Si 0.96 47.75 29.59 68.60 2.03 49.78 16 12 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 13 H -0.30 -15.35 7.11 99.48 0.71 -14.64 16 14 H -0.28 -13.75 7.11 99.48 0.71 -13.05 16 15 C 0.18 8.79 4.89 86.36 0.42 9.22 16 16 C 0.14 5.36 2.06 45.07 0.09 5.46 16 17 H 0.04 2.02 7.58 -2.39 -0.02 2.00 16 18 N -0.71 -20.58 4.37 -442.16 -1.93 -22.51 16 19 C 0.51 16.38 7.79 87.66 0.68 17.06 16 20 O -0.58 -25.63 15.70 -3.02 -0.05 -25.68 16 21 C -0.10 -2.13 5.42 29.10 0.16 -1.97 16 22 C -0.02 -0.58 4.41 -19.64 -0.09 -0.67 16 23 C -0.15 -3.56 9.80 22.36 0.22 -3.34 16 24 C 0.10 2.19 11.18 84.67 0.95 3.13 16 25 N -0.49 -12.81 10.36 -195.76 -2.03 -14.84 16 26 C 0.10 2.51 10.99 84.72 0.93 3.44 16 27 C -0.09 -2.18 6.34 22.42 0.14 -2.04 16 28 Cl -0.05 -1.14 27.58 -2.72 -0.08 -1.21 16 29 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 31 H 0.07 1.22 7.36 -2.39 -0.02 1.20 16 32 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.05 2.11 7.93 -2.39 -0.02 2.10 16 35 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 37 H 0.00 0.05 8.14 -2.38 -0.02 0.04 16 38 H 0.04 2.64 6.04 -2.39 -0.01 2.63 16 39 H 0.41 8.38 8.30 -92.70 -0.77 7.61 16 40 H 0.13 2.10 7.24 -2.39 -0.02 2.09 16 41 H 0.14 2.10 8.07 -2.39 -0.02 2.08 16 42 H 0.16 3.05 8.06 -2.91 -0.02 3.03 16 43 H 0.19 3.10 8.06 -2.91 -0.02 3.08 16 44 H 0.18 3.50 8.06 -2.91 -0.02 3.48 16 Total: -1.00 -79.11 373.50 2.41 -76.70 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 0.25 Total: 16.36 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: 6.08 Total: 11.49 kcal Atomic # 7 Polarization: -121.63 SS G_CDS: -5.82 Total: -127.45 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -0.05 Total: -25.68 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 2.03 Total: 49.78 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -0.08 Total: -1.21 kcal Total: -79.11 2.41 -76.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968331032.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.303 kcal (2) G-P(sol) polarization free energy of solvation -79.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds