Wall clock time and date at job start Tue Mar 31 2020 20:13:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.09000 * 109.46369 * 2 1
4 4 C 1.53044 * 109.46294 * 119.96126 * 2 1 3
5 5 C 1.52763 * 109.38418 * 181.25931 * 4 2 1
6 6 N 1.46929 * 109.00553 * 305.58543 * 5 4 2
7 7 C 1.36940 * 120.62778 * 233.58054 * 6 5 4
8 8 H 1.07996 * 119.99733 * 27.44937 * 7 6 5
9 9 C 1.38810 * 120.00055 * 207.71952 * 7 6 5
10 10 N 1.31618 * 119.99641 * 16.99717 * 9 7 6
11 11 Si 1.86794 * 120.00176 * 196.99896 * 9 7 6
12 12 H 1.48509 * 109.47042 * 359.97438 * 11 9 7
13 13 H 1.48496 * 109.47288 * 119.99906 * 11 9 7
14 14 H 1.48498 * 109.46944 * 240.00280 * 11 9 7
15 15 C 1.46924 * 118.74051 * 53.31136 * 6 5 4
16 16 C 1.53041 * 109.45913 * 240.02643 * 2 1 3
17 17 H 1.09004 * 109.49914 * 298.57040 * 16 2 1
18 18 N 1.46496 * 109.52362 * 58.64459 * 16 2 1
19 19 C 1.34784 * 120.00391 * 204.85321 * 18 16 2
20 20 O 1.21277 * 119.99429 * 0.02562 * 19 18 16
21 21 C 1.50700 * 120.00190 * 179.97438 * 19 18 16
22 22 C 1.50705 * 109.46801 * 180.02562 * 21 19 18
23 23 C 1.38651 * 120.79587 * 264.72368 * 22 21 19
24 24 C 1.38183 * 119.17703 * 179.73388 * 23 22 21
25 25 N 1.31887 * 120.79411 * 0.55576 * 24 23 22
26 26 C 1.31846 * 121.73566 * 359.71472 * 25 24 23
27 27 C 1.38349 * 120.74757 * 0.02562 * 26 25 24
28 28 Cl 1.73602 * 120.43430 * 179.97438 * 27 26 25
29 29 H 1.08998 * 109.47268 * 179.97438 * 1 2 3
30 30 H 1.09006 * 109.46612 * 299.97149 * 1 2 3
31 31 H 1.08993 * 109.47362 * 59.97071 * 1 2 3
32 32 H 1.09001 * 109.49447 * 301.33080 * 4 2 1
33 33 H 1.08995 * 109.49779 * 61.40039 * 4 2 1
34 34 H 1.08996 * 109.50927 * 185.70091 * 5 4 2
35 35 H 1.08998 * 109.43451 * 65.41912 * 5 4 2
36 36 H 0.97004 * 119.99499 * 179.97438 * 10 9 7
37 37 H 1.09005 * 109.58644 * 66.42563 * 15 6 5
38 38 H 1.08994 * 109.58933 * 186.70992 * 15 6 5
39 39 H 0.97006 * 120.00078 * 24.85818 * 18 16 2
40 40 H 1.08997 * 109.47185 * 300.00161 * 21 19 18
41 41 H 1.09000 * 109.46876 * 60.00302 * 21 19 18
42 42 H 1.08008 * 120.40876 * 359.97314 * 23 22 21
43 43 H 1.07995 * 119.60511 * 180.27275 * 24 23 22
44 44 H 1.07997 * 119.62389 * 180.02562 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8932 1.0277 0.0000
4 6 2.0399 -0.7206 1.2501
5 6 3.5672 -0.6922 1.2642
6 7 4.0678 -1.2489 0.0000
7 6 4.9757 -2.2741 0.0001
8 1 5.0081 -2.9665 0.8282
9 6 5.8581 -2.4198 -1.0614
10 7 6.0623 -1.4176 -1.8898
11 14 6.7558 -4.0383 -1.3144
12 1 6.3548 -4.9977 -0.2540
13 1 6.4055 -4.5959 -2.6453
14 1 8.2211 -3.8078 -1.2443
15 6 3.5713 -0.6888 -1.2643
16 6 2.0398 -0.7209 -1.2500
17 1 1.6977 -1.7558 -1.2381
18 7 1.5255 -0.0497 -2.4463
19 6 1.4000 -0.7332 -3.6012
20 8 1.7126 -1.9040 -3.6498
21 6 0.8704 -0.0428 -4.8316
22 6 0.8289 -1.0207 -5.9776
23 6 1.8742 -1.0951 -6.8855
24 6 1.8038 -2.0079 -7.9205
25 7 0.7541 -2.7946 -8.0568
26 6 -0.2608 -2.7485 -7.2165
27 6 -0.2589 -1.8637 -6.1529
28 17 -1.5999 -1.8094 -5.0517
29 1 -0.3634 -1.0276 -0.0005
30 1 -0.3633 0.5134 0.8903
31 1 -0.3634 0.5142 -0.8896
32 1 1.6573 -0.2204 2.1398
33 1 1.6974 -1.7553 1.2388
34 1 3.9347 -1.2905 2.0979
35 1 3.9098 0.3370 1.3714
36 1 6.6792 -1.5193 -2.6314
37 1 3.9142 0.3407 -1.3675
38 1 3.9436 -1.2833 -2.0985
39 1 1.2752 0.8867 -2.4073
40 1 -0.1352 0.3290 -4.6352
41 1 1.5226 0.7917 -5.0891
42 1 2.7346 -0.4503 -6.7827
43 1 2.6161 -2.0748 -8.6291
44 1 -1.1032 -3.4089 -7.3601
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000968331032.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:13:06
Heat of formation + Delta-G solvation = -16.399044 kcal
Electronic energy + Delta-G solvation = -27485.462395 eV
Core-core repulsion = 23655.862137 eV
Total energy + Delta-G solvation = -3829.600258 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 337.130 amu
Computer time = 1.52 seconds
Orbital eigenvalues (eV)
-41.58513 -40.73275 -39.14465 -37.68068 -36.08975 -34.91209 -34.66456 -32.82977
-32.07032 -31.01761 -29.35537 -28.77855 -25.89723 -24.61647 -24.40758 -23.22603
-22.62884 -21.44467 -20.80116 -18.78592 -18.21205 -17.95627 -17.86760 -17.22868
-16.91719 -16.56223 -15.98420 -15.64151 -15.38532 -15.26862 -15.02838 -14.92641
-14.76527 -14.43366 -14.13133 -13.88961 -13.61644 -13.45892 -13.27082 -13.06158
-13.04596 -12.78208 -12.65949 -12.58339 -12.31607 -12.27311 -12.14551 -11.91227
-11.63185 -11.45636 -11.19380 -11.04260 -10.65116 -10.57284 -10.51052 -10.02762
-9.97333 -8.69648 -7.91323 -5.35965 -0.10723 0.03048 0.97445 1.37789
1.42413 1.50358 1.71599 2.21159 2.46859 2.68716 3.25280 3.34681
3.43428 3.62433 3.71097 3.83314 3.89378 3.96794 4.02503 4.18692
4.20854 4.36890 4.49752 4.50512 4.60962 4.61157 4.67866 4.73620
4.76970 4.92494 4.99390 5.05463 5.12194 5.18517 5.22657 5.31252
5.46415 5.48067 5.50060 5.53682 5.61344 5.81224 6.35428 6.66373
6.77946 7.11328 7.38825 7.84377 8.32604 9.13613
Molecular weight = 337.13amu
Principal moments of inertia in cm(-1)
A = 0.010555 B = 0.004203 C = 0.003279
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2652.222180 B = 6660.906281 C = 8536.800620
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C -0.085 4.085
3 H 0.082 0.918
4 C -0.117 4.117
5 C 0.136 3.864
6 N -0.610 5.610
7 C -0.264 4.264
8 H 0.065 0.935
9 C -0.046 4.046
10 N -0.927 5.927
11 Si 0.956 3.044
12 H -0.266 1.266
13 H -0.299 1.299
14 H -0.284 1.284
15 C 0.179 3.821
16 C 0.143 3.857
17 H 0.044 0.956
18 N -0.705 5.705
19 C 0.512 3.488
20 O -0.580 6.580
21 C -0.101 4.101
22 C -0.024 4.024
23 C -0.154 4.154
24 C 0.095 3.905
25 N -0.492 5.492
26 C 0.102 3.898
27 C -0.087 4.087
28 Cl -0.050 7.050
29 H 0.039 0.961
30 H 0.076 0.924
31 H 0.066 0.934
32 H 0.095 0.905
33 H 0.046 0.954
34 H 0.052 0.948
35 H 0.023 0.977
36 H 0.247 0.753
37 H 0.001 0.999
38 H 0.044 0.956
39 H 0.414 0.586
40 H 0.134 0.866
41 H 0.142 0.858
42 H 0.162 0.838
43 H 0.188 0.812
44 H 0.180 0.820
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.505 8.456 -6.676 19.711
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.192 4.192
2 C -0.104 4.104
3 H 0.100 0.900
4 C -0.156 4.156
5 C 0.011 3.989
6 N -0.334 5.334
7 C -0.394 4.394
8 H 0.083 0.917
9 C -0.242 4.242
10 N -0.573 5.573
11 Si 0.785 3.215
12 H -0.190 1.190
13 H -0.226 1.226
14 H -0.210 1.210
15 C 0.052 3.948
16 C 0.036 3.964
17 H 0.063 0.937
18 N -0.357 5.357
19 C 0.299 3.701
20 O -0.459 6.459
21 C -0.140 4.140
22 C -0.033 4.033
23 C -0.173 4.173
24 C -0.061 4.061
25 N -0.202 5.202
26 C -0.055 4.055
27 C -0.116 4.116
28 Cl -0.021 7.021
29 H 0.058 0.942
30 H 0.095 0.905
31 H 0.085 0.915
32 H 0.114 0.886
33 H 0.065 0.935
34 H 0.071 0.929
35 H 0.041 0.959
36 H 0.057 0.943
37 H 0.019 0.981
38 H 0.063 0.937
39 H 0.251 0.749
40 H 0.152 0.848
41 H 0.160 0.840
42 H 0.180 0.820
43 H 0.205 0.795
44 H 0.197 0.803
Dipole moment (debyes) X Y Z Total
from point charges -16.315 7.043 -7.392 19.246
hybrid contribution 0.873 -0.126 0.516 1.022
sum -15.442 6.917 -6.876 18.264
Atomic orbital electron populations
1.21762 0.93040 1.01462 1.02903 1.21262 0.96864 0.99431 0.92824
0.90017 1.21901 0.95741 1.00124 0.97854 1.21076 0.93596 0.96222
0.87986 1.44241 1.48036 1.39954 1.01164 1.19508 1.09626 1.03990
1.06326 0.91722 1.25690 0.98494 1.00055 0.99917 1.70157 1.38304
1.30535 1.18337 0.85373 0.78137 0.80699 0.77336 1.19014 1.22630
1.21033 1.20807 0.89824 0.95029 0.89128 1.21423 0.94680 0.95652
0.84600 0.93740 1.45809 1.65462 1.14998 1.09445 1.20838 0.77410
0.86779 0.85106 1.90766 1.51078 1.18808 1.85210 1.20806 1.06467
0.97965 0.88791 1.19895 0.92556 0.95377 0.95438 1.22385 0.98873
1.01075 0.95014 1.23311 0.95877 0.90142 0.96745 1.67832 1.01580
1.23152 1.27614 1.23040 0.97643 0.95637 0.89197 1.22073 0.92515
1.01252 0.95739 1.98362 1.43813 1.97607 1.62310 0.94221 0.90526
0.91496 0.88633 0.93490 0.92898 0.95946 0.94347 0.98091 0.93734
0.74889 0.84841 0.84035 0.82049 0.79471 0.80311
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.90 9.02 71.98 0.65 -2.25 16
2 C -0.08 -2.42 2.27 -10.77 -0.02 -2.45 16
3 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16
4 C -0.12 -3.64 5.35 30.53 0.16 -3.48 16
5 C 0.14 5.50 6.49 86.22 0.56 6.06 16
6 N -0.61 -31.37 3.00 -699.93 -2.10 -33.47 16
7 C -0.26 -15.21 9.58 84.03 0.81 -14.41 16
8 H 0.07 3.64 7.88 -2.91 -0.02 3.62 16
9 C -0.05 -2.69 4.92 84.86 0.42 -2.27 16
10 N -0.93 -56.87 11.18 21.65 0.24 -56.62 16
11 Si 0.96 47.75 29.59 68.60 2.03 49.78 16
12 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16
13 H -0.30 -15.35 7.11 99.48 0.71 -14.64 16
14 H -0.28 -13.75 7.11 99.48 0.71 -13.05 16
15 C 0.18 8.79 4.89 86.36 0.42 9.22 16
16 C 0.14 5.36 2.06 45.07 0.09 5.46 16
17 H 0.04 2.02 7.58 -2.39 -0.02 2.00 16
18 N -0.71 -20.58 4.37 -442.16 -1.93 -22.51 16
19 C 0.51 16.38 7.79 87.66 0.68 17.06 16
20 O -0.58 -25.63 15.70 -3.02 -0.05 -25.68 16
21 C -0.10 -2.13 5.42 29.10 0.16 -1.97 16
22 C -0.02 -0.58 4.41 -19.64 -0.09 -0.67 16
23 C -0.15 -3.56 9.80 22.36 0.22 -3.34 16
24 C 0.10 2.19 11.18 84.67 0.95 3.13 16
25 N -0.49 -12.81 10.36 -195.76 -2.03 -14.84 16
26 C 0.10 2.51 10.99 84.72 0.93 3.44 16
27 C -0.09 -2.18 6.34 22.42 0.14 -2.04 16
28 Cl -0.05 -1.14 27.58 -2.72 -0.08 -1.21 16
29 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16
30 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16
31 H 0.07 1.22 7.36 -2.39 -0.02 1.20 16
32 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16
33 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16
34 H 0.05 2.11 7.93 -2.39 -0.02 2.10 16
35 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16
36 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16
37 H 0.00 0.05 8.14 -2.38 -0.02 0.04 16
38 H 0.04 2.64 6.04 -2.39 -0.01 2.63 16
39 H 0.41 8.38 8.30 -92.70 -0.77 7.61 16
40 H 0.13 2.10 7.24 -2.39 -0.02 2.09 16
41 H 0.14 2.10 8.07 -2.39 -0.02 2.08 16
42 H 0.16 3.05 8.06 -2.91 -0.02 3.03 16
43 H 0.19 3.10 8.06 -2.91 -0.02 3.08 16
44 H 0.18 3.50 8.06 -2.91 -0.02 3.48 16
Total: -1.00 -79.11 373.50 2.41 -76.70
By element:
Atomic # 1 Polarization: 16.12 SS G_CDS: 0.25 Total: 16.36 kcal
Atomic # 6 Polarization: 5.42 SS G_CDS: 6.08 Total: 11.49 kcal
Atomic # 7 Polarization: -121.63 SS G_CDS: -5.82 Total: -127.45 kcal
Atomic # 8 Polarization: -25.63 SS G_CDS: -0.05 Total: -25.68 kcal
Atomic # 14 Polarization: 47.75 SS G_CDS: 2.03 Total: 49.78 kcal
Atomic # 17 Polarization: -1.14 SS G_CDS: -0.08 Total: -1.21 kcal
Total: -79.11 2.41 -76.70 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000968331032.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 60.303 kcal
(2) G-P(sol) polarization free energy of solvation -79.114 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.811 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.412 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.702 kcal
(6) G-S(sol) free energy of system = (1) + (5) -16.399 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.52 seconds