Wall clock time and date at job start Tue Mar 31 2020 20:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46316 * 2 1 4 4 C 1.53040 * 109.46358 * 240.03633 * 2 1 3 5 5 C 1.53193 * 109.31531 * 178.61403 * 4 2 1 6 6 N 1.46927 * 108.77241 * 54.63530 * 5 4 2 7 7 C 1.36944 * 120.62531 * 126.41367 * 6 5 4 8 8 H 1.07996 * 120.00156 * 331.82476 * 7 6 5 9 9 C 1.38812 * 119.99423 * 151.82786 * 7 6 5 10 10 N 1.31613 * 120.00454 * 343.06446 * 9 7 6 11 11 Si 1.86807 * 119.99638 * 163.06944 * 9 7 6 12 12 H 1.48497 * 109.47097 * 89.99402 * 11 9 7 13 13 H 1.48494 * 109.46727 * 209.99829 * 11 9 7 14 14 H 1.48501 * 109.46986 * 329.99336 * 11 9 7 15 15 C 1.46920 * 118.74225 * 306.39398 * 6 5 4 16 16 C 1.53039 * 109.45979 * 119.96878 * 2 1 3 17 17 H 1.08999 * 109.52993 * 301.35816 * 16 2 1 18 18 N 1.46503 * 109.49715 * 61.43432 * 16 2 1 19 19 C 1.34771 * 120.00593 * 204.83592 * 18 16 2 20 20 O 1.21284 * 119.99402 * 0.02562 * 19 18 16 21 21 C 1.50697 * 120.00332 * 179.97438 * 19 18 16 22 22 C 1.50707 * 109.46975 * 180.02562 * 21 19 18 23 23 C 1.38650 * 120.78938 * 264.72166 * 22 21 19 24 24 C 1.38197 * 119.17386 * 179.73061 * 23 22 21 25 25 N 1.31882 * 120.79228 * 0.55669 * 24 23 22 26 26 C 1.31852 * 121.73960 * 359.71358 * 25 24 23 27 27 C 1.38346 * 120.74253 * 0.02562 * 26 25 24 28 28 Cl 1.73602 * 120.43060 * 179.97438 * 27 26 25 29 29 H 1.08998 * 109.47468 * 300.03203 * 1 2 3 30 30 H 1.08999 * 109.47000 * 60.02944 * 1 2 3 31 31 H 1.08996 * 109.47322 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.49276 * 58.66941 * 4 2 1 33 33 H 1.08993 * 109.49803 * 298.57164 * 4 2 1 34 34 H 1.08998 * 109.58880 * 294.85115 * 5 4 2 35 35 H 1.08994 * 109.58624 * 174.42514 * 5 4 2 36 36 H 0.97003 * 120.00156 * 180.02562 * 10 9 7 37 37 H 1.09000 * 109.59083 * 173.39595 * 15 6 5 38 38 H 1.09005 * 109.58657 * 293.81802 * 15 6 5 39 39 H 0.97001 * 119.99674 * 24.84222 * 18 16 2 40 40 H 1.09004 * 109.47340 * 299.99843 * 21 19 18 41 41 H 1.08997 * 109.47057 * 60.00405 * 21 19 18 42 42 H 1.07994 * 120.41822 * 359.97395 * 23 22 21 43 43 H 1.08000 * 119.60094 * 180.26795 * 24 23 22 44 44 H 1.07998 * 119.62703 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7207 -1.2501 5 6 3.5714 -0.6885 -1.2642 6 7 4.0679 -1.2488 0.0000 7 6 4.9765 -2.2734 -0.0001 8 1 5.0045 -2.9702 -0.8247 9 6 5.8614 -2.4163 1.0598 10 7 6.0659 -1.4126 1.8863 11 14 6.7621 -4.0331 1.3129 12 1 8.0465 -4.0061 0.5681 13 1 7.0329 -4.2275 2.7600 14 1 5.9228 -5.1510 0.8119 15 6 3.5713 -0.6887 1.2643 16 6 2.0398 -0.7208 1.2500 17 1 1.6572 -0.2214 2.1401 18 7 1.5801 -2.1117 1.2341 19 6 1.4546 -2.7934 2.3900 20 8 1.7219 -2.2550 3.4434 21 6 0.9812 -4.2239 2.3736 22 6 0.9278 -4.7516 3.7843 23 6 1.9901 -5.4673 4.3150 24 6 1.9080 -5.9308 5.6143 25 7 0.8316 -5.7091 6.3434 26 6 -0.2000 -5.0375 5.8709 27 6 -0.1879 -4.5381 4.5808 28 17 -1.5508 -3.6555 3.9667 29 1 -0.3634 0.5143 0.8897 30 1 -0.3633 0.5134 -0.8902 31 1 -0.3634 -1.0276 0.0005 32 1 1.6573 -0.2205 -2.1398 33 1 1.6978 -1.7555 -1.2384 34 1 3.9144 0.3410 -1.3672 35 1 3.9417 -1.2843 -2.0984 36 1 6.6846 -1.5124 2.6267 37 1 3.9416 -1.2847 2.0984 38 1 3.9143 0.3408 1.3675 39 1 1.3660 -2.5421 0.3916 40 1 -0.0134 -4.2725 1.9301 41 1 1.6714 -4.8284 1.7851 42 1 2.8725 -5.6567 3.7218 43 1 2.7332 -6.4853 6.0361 44 1 -1.0641 -4.8753 6.4981 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968331033.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:13 Heat of formation + Delta-G solvation = 7.174230 kcal Electronic energy + Delta-G solvation = -28012.525808 eV Core-core repulsion = 24183.947764 eV Total energy + Delta-G solvation = -3828.578045 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.47569 -39.44618 -37.58934 -36.67652 -34.17193 -33.77917 -32.80313 -31.08815 -31.05504 -29.66423 -28.16940 -27.18626 -24.11813 -23.60137 -22.98500 -22.04280 -21.11242 -20.33137 -18.69167 -17.12889 -16.94740 -16.86713 -16.52018 -16.04258 -15.13023 -14.96063 -14.48527 -14.31163 -14.01963 -13.91329 -13.77121 -13.42203 -13.32217 -13.14470 -12.79039 -12.57226 -12.40658 -12.05678 -11.96413 -11.68094 -11.56823 -11.38252 -11.27775 -11.08072 -10.95324 -10.75855 -10.54172 -10.26686 -9.95866 -9.82559 -9.70058 -9.63885 -9.52317 -9.22650 -8.97895 -8.49082 -8.36144 -6.66605 -5.79609 -3.22841 0.89489 1.06620 1.98073 3.15182 3.32823 3.39027 3.41762 3.50876 3.86137 4.34992 4.42242 4.46196 4.59824 4.88110 5.11857 5.16807 5.22236 5.28522 5.31254 5.34597 5.40499 5.52915 5.53506 5.57550 5.76625 5.86118 5.91448 5.99147 6.07744 6.13048 6.27930 6.34951 6.42263 6.44824 6.53473 6.64774 6.73061 6.86681 6.98813 7.36694 7.65340 7.76796 7.77666 8.08225 8.44147 8.77979 9.18913 9.83220 10.39591 11.28199 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.010285 B = 0.005079 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2721.734527 B = 5511.264885 C = 7656.494120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.094 4.094 3 H 0.076 0.924 4 C -0.128 4.128 5 C 0.142 3.858 6 N -0.587 5.587 7 C -0.254 4.254 8 H 0.063 0.937 9 C 0.007 3.993 10 N -0.896 5.896 11 Si 0.895 3.105 12 H -0.287 1.287 13 H -0.289 1.289 14 H -0.280 1.280 15 C 0.161 3.839 16 C 0.128 3.872 17 H 0.075 0.925 18 N -0.697 5.697 19 C 0.521 3.479 20 O -0.538 6.538 21 C -0.114 4.114 22 C -0.002 4.002 23 C -0.145 4.145 24 C 0.102 3.898 25 N -0.475 5.475 26 C 0.110 3.890 27 C -0.075 4.075 28 Cl -0.056 7.056 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.017 0.983 35 H 0.053 0.947 36 H 0.254 0.746 37 H 0.097 0.903 38 H 0.024 0.976 39 H 0.394 0.606 40 H 0.105 0.895 41 H 0.111 0.889 42 H 0.145 0.855 43 H 0.163 0.837 44 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.487 -5.384 -0.168 15.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 H 0.095 0.905 4 C -0.168 4.168 5 C 0.016 3.984 6 N -0.310 5.310 7 C -0.384 4.384 8 H 0.081 0.919 9 C -0.192 4.192 10 N -0.540 5.540 11 Si 0.725 3.275 12 H -0.214 1.214 13 H -0.215 1.215 14 H -0.206 1.206 15 C 0.034 3.966 16 C 0.022 3.978 17 H 0.093 0.907 18 N -0.347 5.347 19 C 0.306 3.694 20 O -0.415 6.415 21 C -0.154 4.154 22 C -0.012 4.012 23 C -0.165 4.165 24 C -0.054 4.054 25 N -0.184 5.184 26 C -0.048 4.048 27 C -0.104 4.104 28 Cl -0.027 7.027 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.035 0.965 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.115 0.885 38 H 0.042 0.958 39 H 0.229 0.771 40 H 0.123 0.877 41 H 0.130 0.870 42 H 0.163 0.837 43 H 0.180 0.820 44 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -14.304 -5.215 1.528 15.301 hybrid contribution 0.490 -0.533 -1.221 1.419 sum -13.814 -5.748 0.307 14.965 Atomic orbital electron populations 1.21840 0.96008 1.01325 1.00922 1.21310 0.94574 0.99879 0.95534 0.90517 1.22074 0.99207 0.99390 0.96081 1.20933 0.90715 0.96515 0.90287 1.43977 1.48251 1.39607 0.99133 1.19059 1.09811 1.03010 1.06522 0.91932 1.25018 0.97140 0.97152 0.99932 1.69996 1.37096 1.28960 1.17961 0.86426 0.79875 0.84010 0.77228 1.21400 1.21516 1.20574 1.21187 0.86751 0.97715 0.90912 1.21773 0.98813 0.80432 0.96807 0.90732 1.45753 1.66919 1.14029 1.08003 1.19871 0.78134 0.86988 0.84454 1.90717 1.50231 1.69763 1.30754 1.20784 1.04757 0.96000 0.93827 1.19644 0.91980 0.94113 0.95415 1.22135 0.98724 0.98369 0.97307 1.22824 0.95555 0.96378 0.90658 1.67785 1.00513 1.13610 1.36461 1.22683 0.97317 0.93523 0.91237 1.21916 0.91399 1.00857 0.96254 1.98363 1.42467 1.74451 1.87425 0.93148 0.93196 0.93062 0.92831 0.92715 0.96495 0.92850 0.93583 0.88533 0.95840 0.77089 0.87666 0.87048 0.83707 0.82003 0.82069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.05 37.16 0.34 -1.45 16 2 C -0.09 -1.42 2.48 -90.58 -0.22 -1.65 16 3 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 4 C -0.13 -1.93 5.20 -26.61 -0.14 -2.07 16 5 C 0.14 2.74 6.52 -3.71 -0.02 2.71 16 6 N -0.59 -13.72 2.91 -172.32 -0.50 -14.23 16 7 C -0.25 -6.63 9.58 -15.06 -0.14 -6.78 16 8 H 0.06 1.60 7.88 -52.49 -0.41 1.19 16 9 C 0.01 0.19 4.92 -17.43 -0.09 0.10 16 10 N -0.90 -25.99 11.20 55.49 0.62 -25.37 16 11 Si 0.89 21.21 29.59 -169.99 -5.03 16.18 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 15 C 0.16 3.76 4.90 -3.71 -0.02 3.74 16 16 C 0.13 2.34 2.24 -67.81 -0.15 2.19 16 17 H 0.07 1.45 7.58 -51.93 -0.39 1.06 16 18 N -0.70 -11.65 4.25 -53.69 -0.23 -11.87 16 19 C 0.52 9.15 7.79 -10.99 -0.09 9.06 16 20 O -0.54 -11.63 15.70 5.55 0.09 -11.54 16 21 C -0.11 -1.54 5.42 -29.03 -0.16 -1.70 16 22 C 0.00 -0.04 4.41 -104.28 -0.46 -0.50 16 23 C -0.15 -1.99 9.80 -39.44 -0.39 -2.37 16 24 C 0.10 1.32 11.18 -17.55 -0.20 1.12 16 25 N -0.47 -6.57 10.36 -13.22 -0.14 -6.71 16 26 C 0.11 1.43 10.99 -17.50 -0.19 1.24 16 27 C -0.08 -1.03 6.34 -39.36 -0.25 -1.27 16 28 Cl -0.06 -0.69 27.58 -51.86 -1.43 -2.12 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.61 7.54 -51.93 -0.39 0.22 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.80 6.40 -51.93 -0.33 0.47 16 34 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.05 1.01 7.93 -51.93 -0.41 0.60 16 36 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.10 2.67 6.06 -51.93 -0.31 2.35 16 38 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.39 5.81 6.64 -40.82 -0.27 5.54 16 40 H 0.11 1.18 7.24 -51.93 -0.38 0.80 16 41 H 0.11 1.36 8.07 -51.93 -0.42 0.94 16 42 H 0.15 1.83 8.06 -52.49 -0.42 1.41 16 43 H 0.16 1.62 8.06 -52.49 -0.42 1.20 16 44 H 0.16 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 370.40 15.07 5.58 5.58 Total: -1.00 -31.83 370.40 -9.48 -41.31 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -6.26 Total: 6.39 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: -2.18 Total: 2.38 kcal Atomic # 7 Polarization: -57.93 SS G_CDS: -0.25 Total: -58.18 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.09 Total: -11.54 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.43 Total: -2.12 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.83 -9.48 -41.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968331033.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.481 kcal (2) G-P(sol) polarization free energy of solvation -31.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds