Wall clock time and date at job start Tue Mar 31 2020 20:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46316 * 2 1 4 4 C 1.53040 * 109.46358 * 240.03633 * 2 1 3 5 5 C 1.53193 * 109.31531 * 178.61403 * 4 2 1 6 6 N 1.46927 * 108.77241 * 54.63530 * 5 4 2 7 7 C 1.36944 * 120.62531 * 126.41367 * 6 5 4 8 8 H 1.07996 * 120.00156 * 331.82476 * 7 6 5 9 9 C 1.38812 * 119.99423 * 151.82786 * 7 6 5 10 10 N 1.31613 * 120.00454 * 343.06446 * 9 7 6 11 11 Si 1.86807 * 119.99638 * 163.06944 * 9 7 6 12 12 H 1.48497 * 109.47097 * 89.99402 * 11 9 7 13 13 H 1.48494 * 109.46727 * 209.99829 * 11 9 7 14 14 H 1.48501 * 109.46986 * 329.99336 * 11 9 7 15 15 C 1.46920 * 118.74225 * 306.39398 * 6 5 4 16 16 C 1.53039 * 109.45979 * 119.96878 * 2 1 3 17 17 H 1.08999 * 109.52993 * 301.35816 * 16 2 1 18 18 N 1.46503 * 109.49715 * 61.43432 * 16 2 1 19 19 C 1.34771 * 120.00593 * 204.83592 * 18 16 2 20 20 O 1.21284 * 119.99402 * 0.02562 * 19 18 16 21 21 C 1.50697 * 120.00332 * 179.97438 * 19 18 16 22 22 C 1.50707 * 109.46975 * 180.02562 * 21 19 18 23 23 C 1.38650 * 120.78938 * 264.72166 * 22 21 19 24 24 C 1.38197 * 119.17386 * 179.73061 * 23 22 21 25 25 N 1.31882 * 120.79228 * 0.55669 * 24 23 22 26 26 C 1.31852 * 121.73960 * 359.71358 * 25 24 23 27 27 C 1.38346 * 120.74253 * 0.02562 * 26 25 24 28 28 Cl 1.73602 * 120.43060 * 179.97438 * 27 26 25 29 29 H 1.08998 * 109.47468 * 300.03203 * 1 2 3 30 30 H 1.08999 * 109.47000 * 60.02944 * 1 2 3 31 31 H 1.08996 * 109.47322 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.49276 * 58.66941 * 4 2 1 33 33 H 1.08993 * 109.49803 * 298.57164 * 4 2 1 34 34 H 1.08998 * 109.58880 * 294.85115 * 5 4 2 35 35 H 1.08994 * 109.58624 * 174.42514 * 5 4 2 36 36 H 0.97003 * 120.00156 * 180.02562 * 10 9 7 37 37 H 1.09000 * 109.59083 * 173.39595 * 15 6 5 38 38 H 1.09005 * 109.58657 * 293.81802 * 15 6 5 39 39 H 0.97001 * 119.99674 * 24.84222 * 18 16 2 40 40 H 1.09004 * 109.47340 * 299.99843 * 21 19 18 41 41 H 1.08997 * 109.47057 * 60.00405 * 21 19 18 42 42 H 1.07994 * 120.41822 * 359.97395 * 23 22 21 43 43 H 1.08000 * 119.60094 * 180.26795 * 24 23 22 44 44 H 1.07998 * 119.62703 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7207 -1.2501 5 6 3.5714 -0.6885 -1.2642 6 7 4.0679 -1.2488 0.0000 7 6 4.9765 -2.2734 -0.0001 8 1 5.0045 -2.9702 -0.8247 9 6 5.8614 -2.4163 1.0598 10 7 6.0659 -1.4126 1.8863 11 14 6.7621 -4.0331 1.3129 12 1 8.0465 -4.0061 0.5681 13 1 7.0329 -4.2275 2.7600 14 1 5.9228 -5.1510 0.8119 15 6 3.5713 -0.6887 1.2643 16 6 2.0398 -0.7208 1.2500 17 1 1.6572 -0.2214 2.1401 18 7 1.5801 -2.1117 1.2341 19 6 1.4546 -2.7934 2.3900 20 8 1.7219 -2.2550 3.4434 21 6 0.9812 -4.2239 2.3736 22 6 0.9278 -4.7516 3.7843 23 6 1.9901 -5.4673 4.3150 24 6 1.9080 -5.9308 5.6143 25 7 0.8316 -5.7091 6.3434 26 6 -0.2000 -5.0375 5.8709 27 6 -0.1879 -4.5381 4.5808 28 17 -1.5508 -3.6555 3.9667 29 1 -0.3634 0.5143 0.8897 30 1 -0.3633 0.5134 -0.8902 31 1 -0.3634 -1.0276 0.0005 32 1 1.6573 -0.2205 -2.1398 33 1 1.6978 -1.7555 -1.2384 34 1 3.9144 0.3410 -1.3672 35 1 3.9417 -1.2843 -2.0984 36 1 6.6846 -1.5124 2.6267 37 1 3.9416 -1.2847 2.0984 38 1 3.9143 0.3408 1.3675 39 1 1.3660 -2.5421 0.3916 40 1 -0.0134 -4.2725 1.9301 41 1 1.6714 -4.8284 1.7851 42 1 2.8725 -5.6567 3.7218 43 1 2.7332 -6.4853 6.0361 44 1 -1.0641 -4.8753 6.4981 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968331033.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:11 Heat of formation + Delta-G solvation = -12.258849 kcal Electronic energy + Delta-G solvation = -28013.368490 eV Core-core repulsion = 24183.947764 eV Total energy + Delta-G solvation = -3829.420726 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.58924 -40.79611 -39.06287 -37.67037 -35.90366 -34.89677 -34.27750 -32.81656 -32.07864 -31.13765 -29.42306 -28.73175 -25.82555 -24.61269 -24.26814 -23.40499 -22.71729 -21.61248 -20.25410 -18.64380 -18.33490 -17.93600 -17.81749 -17.08800 -16.84294 -16.43507 -15.91536 -15.70691 -15.45379 -15.10561 -15.01053 -14.79644 -14.71346 -14.63700 -14.10424 -13.85581 -13.52504 -13.52366 -13.11736 -13.03929 -12.97677 -12.73967 -12.65450 -12.55076 -12.44115 -12.26104 -12.21657 -11.92083 -11.54745 -11.28692 -11.06087 -11.03446 -10.66441 -10.56962 -10.46883 -9.97605 -9.88823 -8.61943 -7.83699 -5.29176 -0.11368 0.02363 0.97553 1.43747 1.44659 1.53964 1.78127 2.32984 2.51341 2.70940 3.32115 3.35744 3.42468 3.61629 3.70612 3.86930 3.88175 4.00424 4.01546 4.14794 4.19889 4.36185 4.50338 4.55069 4.60003 4.68510 4.73145 4.74329 4.85479 4.94542 4.96842 5.06149 5.11663 5.18322 5.26655 5.28670 5.46753 5.48032 5.54275 5.63246 5.73827 5.77710 6.41243 6.72948 6.76526 7.16620 7.43228 7.89975 8.41640 9.21281 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.010285 B = 0.005079 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2721.734527 B = 5511.264885 C = 7656.494120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.088 4.088 3 H 0.071 0.929 4 C -0.114 4.114 5 C 0.135 3.865 6 N -0.599 5.599 7 C -0.249 4.249 8 H 0.072 0.928 9 C -0.052 4.052 10 N -0.936 5.936 11 Si 0.953 3.047 12 H -0.288 1.288 13 H -0.302 1.302 14 H -0.258 1.258 15 C 0.173 3.827 16 C 0.140 3.860 17 H 0.058 0.942 18 N -0.688 5.688 19 C 0.516 3.484 20 O -0.584 6.584 21 C -0.105 4.105 22 C -0.019 4.019 23 C -0.159 4.159 24 C 0.098 3.902 25 N -0.490 5.490 26 C 0.106 3.894 27 C -0.084 4.084 28 Cl -0.047 7.047 29 H 0.046 0.954 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.008 0.992 35 H 0.058 0.942 36 H 0.243 0.757 37 H 0.050 0.950 38 H -0.010 1.010 39 H 0.407 0.593 40 H 0.133 0.867 41 H 0.127 0.873 42 H 0.151 0.849 43 H 0.187 0.813 44 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.684 -6.748 -2.095 18.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.107 4.107 3 H 0.089 0.911 4 C -0.153 4.153 5 C 0.010 3.990 6 N -0.322 5.322 7 C -0.379 4.379 8 H 0.090 0.910 9 C -0.247 4.247 10 N -0.583 5.583 11 Si 0.782 3.218 12 H -0.215 1.215 13 H -0.229 1.229 14 H -0.182 1.182 15 C 0.046 3.954 16 C 0.034 3.966 17 H 0.076 0.924 18 N -0.339 5.339 19 C 0.302 3.698 20 O -0.464 6.464 21 C -0.144 4.144 22 C -0.028 4.028 23 C -0.179 4.179 24 C -0.058 4.058 25 N -0.199 5.199 26 C -0.052 4.052 27 C -0.113 4.113 28 Cl -0.018 7.018 29 H 0.065 0.935 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.107 0.893 33 H 0.085 0.915 34 H 0.026 0.974 35 H 0.077 0.923 36 H 0.052 0.948 37 H 0.068 0.932 38 H 0.007 0.993 39 H 0.245 0.755 40 H 0.150 0.850 41 H 0.145 0.855 42 H 0.168 0.832 43 H 0.204 0.796 44 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -16.543 -6.601 -0.471 17.817 hybrid contribution 1.195 -0.035 -0.651 1.362 sum -15.347 -6.636 -1.122 16.758 Atomic orbital electron populations 1.21749 0.93060 1.02300 1.02028 1.21262 0.96848 0.98967 0.93608 0.91093 1.21947 0.95464 1.00633 0.97280 1.21152 0.93828 0.95709 0.88322 1.44177 1.48101 1.39474 1.00483 1.19438 1.09065 1.03371 1.06033 0.91021 1.25757 0.98710 0.99905 1.00322 1.70190 1.38386 1.31042 1.18655 0.85482 0.78910 0.81232 0.76188 1.21471 1.22886 1.18240 1.20849 0.90198 0.94680 0.89706 1.21389 0.95007 0.81977 0.98252 0.92358 1.45650 1.66247 1.13355 1.08638 1.20584 0.77075 0.88353 0.83749 1.90699 1.52148 1.71114 1.32427 1.20780 1.06453 0.92990 0.94198 1.19842 0.92489 0.94583 0.95923 1.22329 0.98913 0.98756 0.97877 1.23249 0.95993 0.96086 0.90464 1.67844 1.01029 1.14170 1.36865 1.23083 0.97804 0.92881 0.91394 1.22029 0.91704 1.01053 0.96552 1.98358 1.41860 1.74269 1.87323 0.93496 0.90710 0.92128 0.89305 0.91479 0.97379 0.92344 0.94753 0.93169 0.99251 0.75537 0.84961 0.85452 0.83157 0.79598 0.79894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 9.05 71.98 0.65 -2.20 16 2 C -0.09 -2.47 2.48 -10.77 -0.03 -2.50 16 3 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 4 C -0.11 -3.06 5.20 30.67 0.16 -2.90 16 5 C 0.13 5.00 6.52 86.36 0.56 5.56 16 6 N -0.60 -28.13 2.91 -699.11 -2.03 -30.16 16 7 C -0.25 -12.95 9.58 84.03 0.81 -12.15 16 8 H 0.07 3.56 7.88 -2.91 -0.02 3.54 16 9 C -0.05 -2.87 4.92 84.86 0.42 -2.45 16 10 N -0.94 -56.82 11.20 21.65 0.24 -56.58 16 11 Si 0.95 44.12 29.59 68.60 2.03 46.15 16 12 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 13 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 14 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 15 C 0.17 8.39 4.90 86.36 0.42 8.81 16 16 C 0.14 5.16 2.24 45.07 0.10 5.26 16 17 H 0.06 2.34 7.58 -2.39 -0.02 2.33 16 18 N -0.69 -22.15 4.25 -442.17 -1.88 -24.03 16 19 C 0.52 17.81 7.79 87.66 0.68 18.49 16 20 O -0.58 -25.79 15.70 -3.04 -0.05 -25.83 16 21 C -0.10 -2.66 5.42 29.10 0.16 -2.50 16 22 C -0.02 -0.53 4.41 -19.64 -0.09 -0.62 16 23 C -0.16 -4.23 9.80 22.36 0.22 -4.01 16 24 C 0.10 2.44 11.18 84.68 0.95 3.39 16 25 N -0.49 -13.11 10.36 -195.74 -2.03 -15.14 16 26 C 0.11 2.64 10.99 84.72 0.93 3.57 16 27 C -0.08 -2.20 6.34 22.41 0.14 -2.06 16 28 Cl -0.05 -1.09 27.58 -2.72 -0.08 -1.16 16 29 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.06 1.19 7.54 -2.39 -0.02 1.17 16 32 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 33 H 0.07 1.67 6.40 -2.39 -0.02 1.65 16 34 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 35 H 0.06 2.09 7.93 -2.39 -0.02 2.07 16 36 H 0.24 14.64 8.31 -92.71 -0.77 13.87 16 37 H 0.05 2.92 6.06 -2.39 -0.01 2.90 16 38 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 39 H 0.41 10.86 6.64 -92.71 -0.62 10.25 16 40 H 0.13 2.58 7.24 -2.38 -0.02 2.56 16 41 H 0.13 2.82 8.07 -2.39 -0.02 2.80 16 42 H 0.15 3.70 8.06 -2.91 -0.02 3.68 16 43 H 0.19 3.49 8.06 -2.91 -0.02 3.46 16 44 H 0.18 3.52 8.06 -2.91 -0.02 3.49 16 Total: -1.00 -72.52 370.40 2.70 -69.82 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: 0.40 Total: 23.24 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: 6.09 Total: 13.70 kcal Atomic # 7 Polarization: -120.21 SS G_CDS: -5.70 Total: -125.91 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -0.05 Total: -25.83 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Atomic # 17 Polarization: -1.09 SS G_CDS: -0.08 Total: -1.16 kcal Total: -72.52 2.70 -69.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968331033.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.564 kcal (2) G-P(sol) polarization free energy of solvation -72.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds