Wall clock time and date at job start Tue Mar 31 2020 20:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.44987 * 2 1 4 4 C 1.53038 * 109.45867 * 119.96304 * 2 1 3 5 5 C 1.53191 * 109.31248 * 181.38419 * 4 2 1 6 6 N 1.46932 * 108.77418 * 305.37019 * 5 4 2 7 7 C 1.36939 * 120.62779 * 233.58713 * 6 5 4 8 8 H 1.08002 * 120.00337 * 152.63020 * 7 6 5 9 9 C 1.38821 * 119.99940 * 332.63340 * 7 6 5 10 10 N 1.31619 * 119.99782 * 159.34511 * 9 7 6 11 11 Si 1.86797 * 119.99780 * 339.33948 * 9 7 6 12 12 H 1.48501 * 109.46815 * 92.94646 * 11 9 7 13 13 H 1.48504 * 109.46873 * 212.94302 * 11 9 7 14 14 H 1.48500 * 109.47293 * 332.94799 * 11 9 7 15 15 C 1.46917 * 118.74172 * 53.60532 * 6 5 4 16 16 C 1.53040 * 109.45851 * 240.03305 * 2 1 3 17 17 H 1.08995 * 109.52273 * 58.64544 * 16 2 1 18 18 N 1.46505 * 109.49757 * 298.56659 * 16 2 1 19 19 C 1.34774 * 120.00048 * 155.16008 * 18 16 2 20 20 O 1.21280 * 119.99819 * 0.02562 * 19 18 16 21 21 C 1.50694 * 119.99968 * 179.97438 * 19 18 16 22 22 C 1.50706 * 109.47333 * 180.02562 * 21 19 18 23 23 C 1.38646 * 120.79293 * 100.00107 * 22 21 19 24 24 C 1.38185 * 119.17446 * 179.97438 * 23 22 21 25 25 N 1.31875 * 120.79834 * 359.97438 * 24 23 22 26 26 C 1.31848 * 121.73777 * 359.97438 * 25 24 23 27 27 C 1.38354 * 120.74249 * 359.74220 * 26 25 24 28 28 Cl 1.73597 * 120.43352 * 180.28542 * 27 26 25 29 29 H 1.09007 * 109.46932 * 300.03408 * 1 2 3 30 30 H 1.09001 * 109.47602 * 60.03310 * 1 2 3 31 31 H 1.09003 * 109.47614 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.49610 * 61.43331 * 4 2 1 33 33 H 1.08999 * 109.50162 * 301.33578 * 4 2 1 34 34 H 1.09002 * 109.58840 * 65.14939 * 5 4 2 35 35 H 1.08998 * 109.58708 * 185.44068 * 5 4 2 36 36 H 0.97001 * 119.99491 * 180.02562 * 10 9 7 37 37 H 1.08997 * 109.58988 * 66.17839 * 15 6 5 38 38 H 1.09002 * 109.58865 * 186.46473 * 15 6 5 39 39 H 0.97004 * 119.99621 * 335.16341 * 18 16 2 40 40 H 1.09000 * 109.47295 * 300.00654 * 21 19 18 41 41 H 1.09004 * 109.47487 * 60.00113 * 21 19 18 42 42 H 1.08003 * 120.41688 * 359.97438 * 23 22 21 43 43 H 1.08001 * 119.60273 * 179.97438 * 24 23 22 44 44 H 1.07996 * 119.62830 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0398 -0.7207 1.2501 5 6 3.5713 -0.6885 1.2643 6 7 4.0678 -1.2488 0.0000 7 6 4.9763 -2.2734 0.0000 8 1 5.0128 -2.9629 -0.8305 9 6 5.8504 -2.4260 1.0676 10 7 6.4270 -3.5890 1.2850 11 14 6.2084 -0.9805 2.1954 12 1 5.2798 -1.0147 3.3537 13 1 7.6091 -1.0669 2.6812 14 1 6.0210 0.2889 1.4479 15 6 3.5713 -0.6886 -1.2642 16 6 2.0398 -0.7208 -1.2501 17 1 1.6572 -0.2213 -2.1401 18 7 1.5800 -2.1117 -1.2342 19 6 1.4545 -2.7932 -2.3902 20 8 1.7227 -2.2551 -3.4435 21 6 0.9822 -4.2241 -2.3738 22 6 0.9296 -4.7520 -3.7844 23 6 1.9491 -5.5488 -4.2825 24 6 1.8665 -6.0151 -5.5807 25 7 0.8341 -5.7112 -6.3429 26 6 -0.1543 -4.9573 -5.9035 27 6 -0.1438 -4.4588 -4.6130 28 17 -1.4530 -3.4729 -4.0404 29 1 -0.3633 0.5144 0.8897 30 1 -0.3634 0.5133 -0.8903 31 1 -0.3634 -1.0277 0.0005 32 1 1.6977 -1.7555 1.2384 33 1 1.6572 -0.2206 2.1399 34 1 3.9143 0.3410 1.3673 35 1 3.9416 -1.2824 2.0999 36 1 7.0375 -3.6956 2.0312 37 1 3.9142 0.3409 -1.3674 38 1 3.9436 -1.2831 -2.0986 39 1 1.3659 -2.5421 -0.3917 40 1 1.6731 -4.8281 -1.7857 41 1 -0.0121 -4.2735 -1.9298 42 1 2.7973 -5.8019 -3.6636 43 1 2.6569 -6.6360 -5.9758 44 1 -0.9831 -4.7293 -6.5572 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968331034.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:44 Heat of formation + Delta-G solvation = 12.218952 kcal Electronic energy + Delta-G solvation = -27710.744177 eV Core-core repulsion = 23882.384888 eV Total energy + Delta-G solvation = -3828.359289 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -40.57732 -39.67253 -37.86060 -36.72485 -34.44139 -33.87509 -32.85784 -31.45818 -31.14806 -30.05903 -28.44078 -27.44922 -24.00440 -23.66219 -23.15846 -22.48867 -21.34906 -20.50086 -18.91425 -17.29786 -17.00749 -16.91415 -16.57434 -16.12619 -15.39657 -15.29184 -14.88150 -14.46796 -14.11056 -13.95453 -13.84019 -13.64281 -13.61354 -13.37713 -12.87312 -12.57497 -12.50086 -12.34157 -12.10149 -11.97151 -11.78994 -11.57604 -11.48455 -11.33672 -11.27230 -10.71989 -10.65032 -10.27320 -9.96668 -9.91222 -9.75940 -9.70223 -9.48532 -9.38769 -9.04066 -8.87409 -8.47558 -6.98708 -5.99497 -3.34660 0.83195 0.99443 1.93262 2.95067 3.26812 3.39007 3.45334 3.47634 3.71004 4.29116 4.34035 4.48572 4.53244 4.81239 4.91176 4.92894 5.04386 5.09009 5.15342 5.17206 5.26180 5.38431 5.46647 5.51109 5.68711 5.70365 5.71477 5.82451 5.94904 6.00438 6.04470 6.06769 6.19122 6.29353 6.35157 6.38452 6.50061 6.57608 6.65244 6.74809 6.96155 7.70753 7.85574 7.92803 8.28106 8.55703 8.90188 9.68188 10.05502 11.16528 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.014594 B = 0.003781 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.172260 B = 7404.293048 C = 8827.602496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.094 4.094 3 H 0.078 0.922 4 C -0.130 4.130 5 C 0.123 3.877 6 N -0.601 5.601 7 C -0.254 4.254 8 H 0.083 0.917 9 C 0.024 3.976 10 N -0.909 5.909 11 Si 0.883 3.117 12 H -0.290 1.290 13 H -0.304 1.304 14 H -0.272 1.272 15 C 0.137 3.863 16 C 0.136 3.864 17 H 0.081 0.919 18 N -0.699 5.699 19 C 0.523 3.477 20 O -0.541 6.541 21 C -0.114 4.114 22 C -0.005 4.005 23 C -0.147 4.147 24 C 0.101 3.899 25 N -0.474 5.474 26 C 0.110 3.890 27 C -0.073 4.073 28 Cl -0.055 7.055 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.025 0.975 35 H 0.073 0.927 36 H 0.262 0.738 37 H 0.030 0.970 38 H 0.068 0.932 39 H 0.400 0.600 40 H 0.115 0.885 41 H 0.107 0.893 42 H 0.147 0.853 43 H 0.163 0.837 44 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.858 -0.716 -6.389 17.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 H 0.097 0.903 4 C -0.169 4.169 5 C -0.003 4.003 6 N -0.325 5.325 7 C -0.382 4.382 8 H 0.101 0.899 9 C -0.175 4.175 10 N -0.552 5.552 11 Si 0.713 3.287 12 H -0.218 1.218 13 H -0.233 1.233 14 H -0.197 1.197 15 C 0.010 3.990 16 C 0.030 3.970 17 H 0.099 0.901 18 N -0.350 5.350 19 C 0.308 3.692 20 O -0.419 6.419 21 C -0.153 4.153 22 C -0.014 4.014 23 C -0.167 4.167 24 C -0.055 4.055 25 N -0.183 5.183 26 C -0.048 4.048 27 C -0.102 4.102 28 Cl -0.026 7.026 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.043 0.957 35 H 0.091 0.909 36 H 0.072 0.928 37 H 0.048 0.952 38 H 0.086 0.914 39 H 0.235 0.765 40 H 0.133 0.867 41 H 0.125 0.875 42 H 0.165 0.835 43 H 0.181 0.819 44 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -15.663 -0.657 -7.862 17.538 hybrid contribution 0.258 0.989 2.197 2.423 sum -15.405 0.332 -5.665 16.417 Atomic orbital electron populations 1.21830 0.95504 1.01603 1.01150 1.21318 0.95078 0.99801 0.95153 0.90322 1.22082 0.98571 1.00001 0.96243 1.21361 0.91571 0.97036 0.90293 1.44305 1.48778 1.40316 0.99091 1.18864 1.09663 1.02542 1.07169 0.89941 1.25268 0.97378 0.96604 0.98271 1.69827 1.32676 1.22013 1.30668 0.86967 0.76258 0.84941 0.80492 1.21765 1.23285 1.19661 1.21325 0.90716 0.97094 0.89842 1.21493 0.96716 0.81152 0.97599 0.90054 1.45803 1.66962 1.13767 1.08482 1.19956 0.77824 0.87164 0.84219 1.90701 1.50539 1.69883 1.30756 1.20770 1.04978 0.95618 0.93967 1.19642 0.92226 0.94299 0.95211 1.22158 0.98891 0.98064 0.97538 1.22840 0.95476 0.96788 0.90379 1.67788 1.01489 1.12555 1.36506 1.22693 0.97206 0.93274 0.91602 1.21925 0.92639 0.99393 0.96283 1.98367 1.46597 1.68762 1.88902 0.92918 0.93027 0.92843 0.92032 0.92396 0.95729 0.90880 0.92824 0.95249 0.91357 0.76484 0.86709 0.87512 0.83492 0.81934 0.82086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.05 37.16 0.34 -1.28 16 2 C -0.09 -1.30 2.48 -90.58 -0.22 -1.52 16 3 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 4 C -0.13 -1.98 5.20 -26.61 -0.14 -2.12 16 5 C 0.12 2.47 4.20 -3.71 -0.02 2.45 16 6 N -0.60 -13.33 2.69 -172.32 -0.46 -13.79 16 7 C -0.25 -6.75 10.04 -15.05 -0.15 -6.90 16 8 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 9 C 0.02 0.65 5.23 -17.43 -0.09 0.56 16 10 N -0.91 -26.90 13.97 55.49 0.78 -26.12 16 11 Si 0.88 21.75 24.35 -169.99 -4.14 17.61 16 12 H -0.29 -6.84 6.62 56.52 0.37 -6.47 16 13 H -0.30 -7.75 7.11 56.52 0.40 -7.34 16 14 H -0.27 -6.63 6.63 56.52 0.37 -6.25 16 15 C 0.14 2.67 6.12 -3.72 -0.02 2.65 16 16 C 0.14 2.15 2.24 -67.81 -0.15 2.00 16 17 H 0.08 1.31 7.58 -51.93 -0.39 0.92 16 18 N -0.70 -10.45 4.25 -53.69 -0.23 -10.68 16 19 C 0.52 8.10 7.69 -10.99 -0.08 8.02 16 20 O -0.54 -10.17 15.64 5.56 0.09 -10.08 16 21 C -0.11 -1.39 5.35 -29.03 -0.16 -1.55 16 22 C 0.00 -0.06 4.45 -104.28 -0.46 -0.52 16 23 C -0.15 -1.75 9.78 -39.45 -0.39 -2.14 16 24 C 0.10 1.16 11.18 -17.55 -0.20 0.96 16 25 N -0.47 -6.01 10.36 -13.22 -0.14 -6.15 16 26 C 0.11 1.32 10.99 -17.50 -0.19 1.12 16 27 C -0.07 -0.92 6.27 -39.35 -0.25 -1.17 16 28 Cl -0.06 -0.64 27.60 -51.86 -1.43 -2.07 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.59 7.54 -51.93 -0.39 0.20 16 32 H 0.06 0.93 6.40 -51.93 -0.33 0.60 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.02 0.50 7.08 -51.93 -0.37 0.13 16 35 H 0.07 1.63 4.50 -51.93 -0.23 1.39 16 36 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 1.47 7.93 -51.93 -0.41 1.06 16 39 H 0.40 5.53 6.64 -40.82 -0.27 5.26 16 40 H 0.11 1.30 8.04 -51.93 -0.42 0.88 16 41 H 0.11 1.09 7.45 -51.93 -0.39 0.70 16 42 H 0.15 1.56 8.06 -52.48 -0.42 1.14 16 43 H 0.16 1.38 8.06 -52.49 -0.42 0.96 16 44 H 0.16 1.53 8.06 -52.49 -0.42 1.10 16 LS Contribution 363.87 15.07 5.48 5.48 Total: -1.00 -32.05 363.87 -8.44 -40.49 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -6.20 Total: 4.75 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: -2.18 Total: 0.56 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: -0.05 Total: -56.74 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.09 Total: -10.08 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.14 Total: 17.61 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.43 Total: -2.07 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.05 -8.44 -40.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968331034.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.705 kcal (2) G-P(sol) polarization free energy of solvation -32.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds