Wall clock time and date at job start Tue Mar 31 2020 20:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.44987 * 2 1 4 4 C 1.53038 * 109.45867 * 119.96304 * 2 1 3 5 5 C 1.53191 * 109.31248 * 181.38419 * 4 2 1 6 6 N 1.46932 * 108.77418 * 305.37019 * 5 4 2 7 7 C 1.36939 * 120.62779 * 233.58713 * 6 5 4 8 8 H 1.08002 * 120.00337 * 152.63020 * 7 6 5 9 9 C 1.38821 * 119.99940 * 332.63340 * 7 6 5 10 10 N 1.31619 * 119.99782 * 159.34511 * 9 7 6 11 11 Si 1.86797 * 119.99780 * 339.33948 * 9 7 6 12 12 H 1.48501 * 109.46815 * 92.94646 * 11 9 7 13 13 H 1.48504 * 109.46873 * 212.94302 * 11 9 7 14 14 H 1.48500 * 109.47293 * 332.94799 * 11 9 7 15 15 C 1.46917 * 118.74172 * 53.60532 * 6 5 4 16 16 C 1.53040 * 109.45851 * 240.03305 * 2 1 3 17 17 H 1.08995 * 109.52273 * 58.64544 * 16 2 1 18 18 N 1.46505 * 109.49757 * 298.56659 * 16 2 1 19 19 C 1.34774 * 120.00048 * 155.16008 * 18 16 2 20 20 O 1.21280 * 119.99819 * 0.02562 * 19 18 16 21 21 C 1.50694 * 119.99968 * 179.97438 * 19 18 16 22 22 C 1.50706 * 109.47333 * 180.02562 * 21 19 18 23 23 C 1.38646 * 120.79293 * 100.00107 * 22 21 19 24 24 C 1.38185 * 119.17446 * 179.97438 * 23 22 21 25 25 N 1.31875 * 120.79834 * 359.97438 * 24 23 22 26 26 C 1.31848 * 121.73777 * 359.97438 * 25 24 23 27 27 C 1.38354 * 120.74249 * 359.74220 * 26 25 24 28 28 Cl 1.73597 * 120.43352 * 180.28542 * 27 26 25 29 29 H 1.09007 * 109.46932 * 300.03408 * 1 2 3 30 30 H 1.09001 * 109.47602 * 60.03310 * 1 2 3 31 31 H 1.09003 * 109.47614 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.49610 * 61.43331 * 4 2 1 33 33 H 1.08999 * 109.50162 * 301.33578 * 4 2 1 34 34 H 1.09002 * 109.58840 * 65.14939 * 5 4 2 35 35 H 1.08998 * 109.58708 * 185.44068 * 5 4 2 36 36 H 0.97001 * 119.99491 * 180.02562 * 10 9 7 37 37 H 1.08997 * 109.58988 * 66.17839 * 15 6 5 38 38 H 1.09002 * 109.58865 * 186.46473 * 15 6 5 39 39 H 0.97004 * 119.99621 * 335.16341 * 18 16 2 40 40 H 1.09000 * 109.47295 * 300.00654 * 21 19 18 41 41 H 1.09004 * 109.47487 * 60.00113 * 21 19 18 42 42 H 1.08003 * 120.41688 * 359.97438 * 23 22 21 43 43 H 1.08001 * 119.60273 * 179.97438 * 24 23 22 44 44 H 1.07996 * 119.62830 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0398 -0.7207 1.2501 5 6 3.5713 -0.6885 1.2643 6 7 4.0678 -1.2488 0.0000 7 6 4.9763 -2.2734 0.0000 8 1 5.0128 -2.9629 -0.8305 9 6 5.8504 -2.4260 1.0676 10 7 6.4270 -3.5890 1.2850 11 14 6.2084 -0.9805 2.1954 12 1 5.2798 -1.0147 3.3537 13 1 7.6091 -1.0669 2.6812 14 1 6.0210 0.2889 1.4479 15 6 3.5713 -0.6886 -1.2642 16 6 2.0398 -0.7208 -1.2501 17 1 1.6572 -0.2213 -2.1401 18 7 1.5800 -2.1117 -1.2342 19 6 1.4545 -2.7932 -2.3902 20 8 1.7227 -2.2551 -3.4435 21 6 0.9822 -4.2241 -2.3738 22 6 0.9296 -4.7520 -3.7844 23 6 1.9491 -5.5488 -4.2825 24 6 1.8665 -6.0151 -5.5807 25 7 0.8341 -5.7112 -6.3429 26 6 -0.1543 -4.9573 -5.9035 27 6 -0.1438 -4.4588 -4.6130 28 17 -1.4530 -3.4729 -4.0404 29 1 -0.3633 0.5144 0.8897 30 1 -0.3634 0.5133 -0.8903 31 1 -0.3634 -1.0277 0.0005 32 1 1.6977 -1.7555 1.2384 33 1 1.6572 -0.2206 2.1399 34 1 3.9143 0.3410 1.3673 35 1 3.9416 -1.2824 2.0999 36 1 7.0375 -3.6956 2.0312 37 1 3.9142 0.3409 -1.3674 38 1 3.9436 -1.2831 -2.0986 39 1 1.3659 -2.5421 -0.3917 40 1 1.6731 -4.8281 -1.7857 41 1 -0.0121 -4.2735 -1.9298 42 1 2.7973 -5.8019 -3.6636 43 1 2.6569 -6.6360 -5.9758 44 1 -0.9831 -4.7293 -6.5572 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968331034.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:43 Heat of formation + Delta-G solvation = -8.345712 kcal Electronic energy + Delta-G solvation = -27711.635928 eV Core-core repulsion = 23882.384888 eV Total energy + Delta-G solvation = -3829.251040 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.60909 -40.87132 -39.21921 -37.64546 -36.06931 -34.89105 -34.18486 -33.35630 -32.05477 -31.41426 -29.57262 -28.87419 -25.62495 -24.58748 -24.45652 -23.68041 -22.88580 -21.64147 -20.34845 -18.73929 -18.29196 -17.93340 -17.81712 -17.18241 -17.08663 -16.61792 -16.15859 -15.61601 -15.46908 -15.17186 -15.05906 -15.04181 -14.87846 -14.66692 -14.22038 -13.95356 -13.70909 -13.59672 -13.51091 -13.07082 -13.01575 -12.94264 -12.63631 -12.62151 -12.33918 -12.24989 -12.20065 -11.83094 -11.56130 -11.36113 -11.15153 -11.06268 -10.70519 -10.63663 -10.51552 -9.98146 -9.95248 -8.84458 -8.13949 -5.44582 -0.08800 0.04449 1.00367 1.29955 1.43774 1.51401 1.72396 2.29627 2.42809 2.70868 3.10237 3.33053 3.37059 3.44852 3.63808 3.76320 3.89526 3.91845 3.97276 4.03399 4.20877 4.34556 4.39078 4.51928 4.53730 4.57102 4.63242 4.71406 4.72661 4.80008 4.86537 4.97811 5.00691 5.03856 5.08325 5.15448 5.21598 5.39410 5.48216 5.49798 5.67572 5.89061 6.13805 6.65426 6.79350 6.94290 7.34136 7.65065 8.04792 9.05852 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.014594 B = 0.003781 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.172260 B = 7404.293048 C = 8827.602496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.086 4.086 3 H 0.086 0.914 4 C -0.120 4.120 5 C 0.116 3.884 6 N -0.610 5.610 7 C -0.236 4.236 8 H 0.044 0.956 9 C -0.031 4.031 10 N -0.955 5.955 11 Si 0.945 3.055 12 H -0.270 1.270 13 H -0.318 1.318 14 H -0.266 1.266 15 C 0.137 3.863 16 C 0.145 3.855 17 H 0.082 0.918 18 N -0.696 5.696 19 C 0.520 3.480 20 O -0.577 6.577 21 C -0.107 4.107 22 C -0.020 4.020 23 C -0.157 4.157 24 C 0.099 3.901 25 N -0.490 5.490 26 C 0.105 3.895 27 C -0.083 4.083 28 Cl -0.049 7.049 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.030 0.970 35 H 0.051 0.949 36 H 0.260 0.740 37 H 0.037 0.963 38 H 0.036 0.964 39 H 0.406 0.594 40 H 0.122 0.878 41 H 0.130 0.870 42 H 0.155 0.845 43 H 0.189 0.811 44 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.086 0.640 -5.507 18.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.105 4.105 3 H 0.105 0.895 4 C -0.159 4.159 5 C -0.009 4.009 6 N -0.334 5.334 7 C -0.366 4.366 8 H 0.062 0.938 9 C -0.226 4.226 10 N -0.602 5.602 11 Si 0.775 3.225 12 H -0.197 1.197 13 H -0.247 1.247 14 H -0.191 1.191 15 C 0.011 3.989 16 C 0.038 3.962 17 H 0.100 0.900 18 N -0.346 5.346 19 C 0.307 3.693 20 O -0.457 6.457 21 C -0.147 4.147 22 C -0.029 4.029 23 C -0.177 4.177 24 C -0.057 4.057 25 N -0.200 5.200 26 C -0.052 4.052 27 C -0.112 4.112 28 Cl -0.020 7.020 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.106 0.894 34 H 0.048 0.952 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.243 0.757 40 H 0.140 0.860 41 H 0.148 0.852 42 H 0.172 0.828 43 H 0.206 0.794 44 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -17.946 0.728 -6.965 19.264 hybrid contribution 0.957 0.552 1.813 2.123 sum -16.989 1.280 -5.152 17.799 Atomic orbital electron populations 1.21751 0.92956 1.02239 1.02328 1.21279 0.97018 0.99449 0.92798 0.89543 1.21986 0.94647 1.00967 0.98345 1.21457 0.94983 0.96323 0.88107 1.44337 1.48357 1.39719 1.00999 1.18702 1.10055 1.02431 1.05411 0.93798 1.25821 0.97803 0.98567 1.00397 1.69953 1.34272 1.23961 1.31994 0.85956 0.75427 0.81785 0.79375 1.19654 1.24738 1.19107 1.21381 0.93497 0.96445 0.87617 1.21325 0.93686 0.82030 0.99122 0.90035 1.45799 1.66463 1.13601 1.08786 1.20478 0.76972 0.88178 0.83678 1.90681 1.52088 1.70920 1.31997 1.20764 1.06260 0.93364 0.94276 1.19821 0.92741 0.94791 0.95562 1.22359 0.99055 0.98236 0.98068 1.23278 0.95738 0.96552 0.90137 1.67845 1.02032 1.13105 1.36968 1.23057 0.97605 0.92792 0.91781 1.22027 0.92895 0.99706 0.96583 1.98360 1.46187 1.68617 1.88851 0.90992 0.92640 0.92515 0.91814 0.89387 0.95228 0.93050 0.93126 0.94544 0.94533 0.75677 0.85980 0.85248 0.82762 0.79416 0.80101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.05 71.98 0.65 -1.84 16 2 C -0.09 -2.08 2.48 -10.77 -0.03 -2.11 16 3 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 4 C -0.12 -3.26 5.20 30.67 0.16 -3.10 16 5 C 0.12 4.39 4.20 86.36 0.36 4.75 16 6 N -0.61 -26.79 2.69 -699.10 -1.88 -28.67 16 7 C -0.24 -12.85 10.04 84.04 0.84 -12.00 16 8 H 0.04 2.69 8.06 -2.91 -0.02 2.66 16 9 C -0.03 -1.75 5.23 84.86 0.44 -1.31 16 10 N -0.96 -58.17 13.97 21.65 0.30 -57.86 16 11 Si 0.94 45.14 24.35 68.60 1.67 46.81 16 12 H -0.27 -11.92 6.62 99.48 0.66 -11.27 16 13 H -0.32 -15.79 7.11 99.48 0.71 -15.08 16 14 H -0.27 -12.33 6.63 99.48 0.66 -11.67 16 15 C 0.14 5.31 6.12 86.36 0.53 5.84 16 16 C 0.14 4.35 2.24 45.07 0.10 4.45 16 17 H 0.08 2.51 7.58 -2.39 -0.02 2.49 16 18 N -0.70 -19.94 4.25 -442.17 -1.88 -21.82 16 19 C 0.52 15.84 7.69 87.66 0.67 16.51 16 20 O -0.58 -21.73 15.64 -3.03 -0.05 -21.78 16 21 C -0.11 -2.54 5.35 29.10 0.16 -2.38 16 22 C -0.02 -0.51 4.45 -19.65 -0.09 -0.59 16 23 C -0.16 -3.73 9.78 22.35 0.22 -3.51 16 24 C 0.10 2.20 11.18 84.67 0.95 3.14 16 25 N -0.49 -12.06 10.36 -195.75 -2.03 -14.08 16 26 C 0.11 2.42 10.99 84.72 0.93 3.36 16 27 C -0.08 -2.02 6.27 22.42 0.14 -1.88 16 28 Cl -0.05 -1.07 27.60 -2.72 -0.08 -1.15 16 29 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 30 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.06 1.02 7.54 -2.39 -0.02 1.00 16 32 H 0.06 1.72 6.40 -2.39 -0.02 1.70 16 33 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.03 1.11 7.08 -2.39 -0.02 1.09 16 35 H 0.05 2.18 4.50 -2.39 -0.01 2.17 16 36 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 37 H 0.04 1.36 8.14 -2.39 -0.02 1.35 16 38 H 0.04 1.62 7.93 -2.39 -0.02 1.60 16 39 H 0.41 10.51 6.64 -92.71 -0.62 9.90 16 40 H 0.12 2.70 8.04 -2.39 -0.02 2.68 16 41 H 0.13 2.42 7.45 -2.38 -0.02 2.40 16 42 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 43 H 0.19 2.99 8.06 -2.91 -0.02 2.96 16 44 H 0.18 3.22 8.06 -2.91 -0.02 3.19 16 Total: -1.00 -70.84 363.87 2.42 -68.42 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: 0.31 Total: 20.81 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: 6.04 Total: 9.32 kcal Atomic # 7 Polarization: -116.95 SS G_CDS: -5.49 Total: -122.44 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -0.05 Total: -21.78 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.67 Total: 46.81 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -0.08 Total: -1.15 kcal Total: -70.84 2.42 -68.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968331034.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.075 kcal (2) G-P(sol) polarization free energy of solvation -70.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds