Wall clock time and date at job start Tue Mar 31 2020 20:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.58252 * 2 1 4 4 C 1.53188 * 109.58623 * 120.27879 * 2 1 3 5 5 H 1.09000 * 109.50303 * 294.37616 * 4 2 1 6 6 N 1.46495 * 109.49735 * 54.47703 * 4 2 1 7 7 C 1.34785 * 120.00189 * 204.99994 * 6 4 2 8 8 O 1.21284 * 119.99545 * 359.97438 * 7 6 4 9 9 C 1.50703 * 120.00005 * 179.97438 * 7 6 4 10 10 C 1.50695 * 109.46826 * 179.97438 * 9 7 6 11 11 C 1.38650 * 120.79357 * 100.00242 * 10 9 7 12 12 C 1.38198 * 119.17688 * 179.97438 * 11 10 9 13 13 N 1.31882 * 120.79220 * 0.02562 * 12 11 10 14 14 C 1.31841 * 121.74019 * 359.97438 * 13 12 11 15 15 C 1.38355 * 120.74657 * 359.74342 * 14 13 12 16 16 Cl 1.73600 * 120.43648 * 180.28645 * 15 14 13 17 17 C 1.53048 * 109.31202 * 174.42443 * 4 2 1 18 18 C 1.53034 * 109.53722 * 298.63470 * 17 4 2 19 19 C 1.53198 * 109.31446 * 61.36687 * 18 17 4 20 20 N 1.46924 * 109.58961 * 239.71887 * 2 1 3 21 21 C 1.36936 * 120.63195 * 6.60068 * 20 2 1 22 22 H 1.08005 * 119.99715 * 330.25879 * 21 20 2 23 23 C 1.38809 * 120.00262 * 150.24590 * 21 20 2 24 24 N 1.31625 * 119.99934 * 344.60477 * 23 21 20 25 25 Si 1.86794 * 120.00187 * 164.59761 * 23 21 20 26 26 H 1.48503 * 109.47104 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.47427 * 120.00327 * 25 23 21 28 28 H 1.48507 * 109.47291 * 240.00689 * 25 23 21 29 29 H 1.08992 * 109.46826 * 299.99976 * 1 2 3 30 30 H 1.09000 * 109.46992 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46646 * 60.00022 * 1 2 3 32 32 H 0.96998 * 120.00582 * 24.99365 * 6 4 2 33 33 H 1.08993 * 109.47047 * 300.00236 * 9 7 6 34 34 H 1.09003 * 109.46774 * 60.00535 * 9 7 6 35 35 H 1.07997 * 120.41404 * 359.95774 * 11 10 9 36 36 H 1.07998 * 119.60241 * 179.97438 * 12 11 10 37 37 H 1.08002 * 119.62681 * 180.02562 * 14 13 12 38 38 H 1.08997 * 109.45816 * 58.65910 * 17 4 2 39 39 H 1.08997 * 109.45505 * 178.62986 * 17 4 2 40 40 H 1.08994 * 109.49864 * 181.31484 * 18 17 4 41 41 H 1.09000 * 109.50215 * 301.41693 * 18 17 4 42 42 H 1.09001 * 109.58488 * 65.14718 * 19 18 17 43 43 H 1.08992 * 109.59007 * 185.43646 * 19 18 17 44 44 H 0.96998 * 119.99749 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7277 1.2464 5 1 1.7660 -0.1640 2.1371 6 7 1.4515 -2.0662 1.3098 7 6 1.3285 -2.6932 2.4965 8 8 1.7084 -2.1493 3.5119 9 6 0.7189 -4.0699 2.5618 10 6 0.6984 -4.5428 3.9925 11 6 -0.4611 -4.4660 4.7488 12 6 -0.4425 -4.9098 6.0575 13 7 0.6604 -5.4011 6.5881 14 6 1.7814 -5.4897 5.8999 15 6 1.8377 -5.0707 4.5825 16 17 3.3161 -5.1980 3.6815 17 6 3.5676 -0.8463 1.1713 18 6 3.9570 -1.6657 -0.0612 19 6 3.4652 -0.9486 -1.3225 20 7 2.0227 -0.6980 -1.1953 21 6 1.1539 -1.1103 -2.1702 22 1 0.1394 -1.3765 -1.9120 23 6 1.5768 -1.1861 -3.4901 24 7 2.6894 -0.5878 -3.8600 25 14 0.5673 -2.1372 -4.7413 26 1 -0.6301 -2.7121 -4.0772 27 1 0.1378 -1.2223 -5.8293 28 1 1.3911 -3.2330 -5.3122 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 1.1480 -2.5013 0.4977 33 1 -0.2997 -4.0348 2.1756 34 1 1.3121 -4.7587 1.9603 35 1 -1.3675 -4.0641 4.3208 36 1 -1.3416 -4.8528 6.6530 37 1 2.6647 -5.8982 6.3684 38 1 4.0062 0.1489 1.0992 39 1 3.9378 -1.3422 2.0685 40 1 5.0413 -1.7696 -0.1013 41 1 3.4984 -2.6527 -0.0018 42 1 3.9904 0.0003 -1.4316 43 1 3.6542 -1.5734 -2.1953 44 1 2.9851 -0.6411 -4.7823 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993822785.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:22 Heat of formation + Delta-G solvation = -8.417922 kcal Electronic energy + Delta-G solvation = -27674.665085 eV Core-core repulsion = 23845.410914 eV Total energy + Delta-G solvation = -3829.254171 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.57000 -40.79146 -39.09921 -37.62835 -35.59653 -34.85630 -33.99232 -33.36056 -32.01929 -31.31844 -29.42256 -27.75567 -26.80375 -24.54832 -24.25802 -23.37091 -22.36980 -21.55359 -20.26276 -18.30388 -18.26218 -17.90237 -17.76955 -17.08099 -16.93667 -16.32166 -16.18678 -15.70103 -15.43253 -15.19857 -14.94351 -14.83404 -14.70949 -14.40709 -14.22836 -13.84934 -13.55003 -13.44667 -13.01187 -12.92521 -12.88672 -12.73219 -12.58088 -12.41980 -12.28580 -12.24117 -12.15575 -11.87838 -11.66423 -11.35671 -11.04392 -11.00593 -10.60067 -10.50547 -10.46672 -9.93374 -9.86482 -8.58819 -7.79714 -5.26696 -0.05411 0.07644 1.04785 1.50436 1.54174 1.61993 1.74125 2.31949 2.55804 2.74462 3.37322 3.40382 3.47786 3.60863 3.67240 3.89879 3.94684 4.08395 4.09875 4.22123 4.25024 4.40518 4.41908 4.56424 4.60495 4.65634 4.68814 4.77087 4.84075 4.97695 5.00355 5.05333 5.10213 5.14566 5.24862 5.36727 5.49850 5.53795 5.56470 5.68170 5.77293 5.81449 6.46409 6.72451 6.83085 7.21331 7.36207 7.91479 8.45490 9.27328 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.016502 B = 0.003282 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.326030 B = 8530.524367 C = 8718.166600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.157 3.843 3 H 0.026 0.974 4 C 0.148 3.852 5 H 0.078 0.922 6 N -0.697 5.697 7 C 0.519 3.481 8 O -0.575 6.575 9 C -0.108 4.108 10 C -0.021 4.021 11 C -0.149 4.149 12 C 0.097 3.903 13 N -0.493 5.493 14 C 0.102 3.898 15 C -0.089 4.089 16 Cl -0.058 7.058 17 C -0.115 4.115 18 C -0.124 4.124 19 C 0.181 3.819 20 N -0.595 5.595 21 C -0.244 4.244 22 H 0.084 0.916 23 C -0.050 4.050 24 N -0.938 5.938 25 Si 0.958 3.042 26 H -0.258 1.258 27 H -0.303 1.303 28 H -0.298 1.298 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.045 0.955 32 H 0.410 0.590 33 H 0.141 0.859 34 H 0.116 0.884 35 H 0.172 0.828 36 H 0.194 0.806 37 H 0.174 0.826 38 H 0.061 0.939 39 H 0.052 0.948 40 H 0.056 0.944 41 H 0.055 0.945 42 H -0.009 1.009 43 H 0.053 0.947 44 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.100 -9.432 15.959 19.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.050 3.950 3 H 0.043 0.957 4 C 0.041 3.959 5 H 0.096 0.904 6 N -0.348 5.348 7 C 0.306 3.694 8 O -0.456 6.456 9 C -0.147 4.147 10 C -0.030 4.030 11 C -0.168 4.168 12 C -0.059 4.059 13 N -0.202 5.202 14 C -0.055 4.055 15 C -0.118 4.118 16 Cl -0.029 7.029 17 C -0.153 4.153 18 C -0.163 4.163 19 C 0.055 3.945 20 N -0.319 5.319 21 C -0.374 4.374 22 H 0.102 0.898 23 C -0.246 4.246 24 N -0.584 5.584 25 Si 0.787 3.213 26 H -0.182 1.182 27 H -0.231 1.231 28 H -0.225 1.225 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.246 0.754 33 H 0.159 0.841 34 H 0.135 0.865 35 H 0.190 0.810 36 H 0.210 0.790 37 H 0.191 0.809 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.009 0.991 43 H 0.072 0.928 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -5.674 -9.323 17.296 20.452 hybrid contribution 0.318 0.061 -2.565 2.586 sum -5.356 -9.261 14.731 18.206 Atomic orbital electron populations 1.21696 0.93932 1.02012 1.00777 1.20838 0.94747 0.93213 0.86194 0.95683 1.21233 0.92481 0.83795 0.98406 0.90403 1.45901 1.61579 1.18053 1.09256 1.20567 0.78300 0.87481 0.83059 1.90686 1.51322 1.68170 1.35377 1.20792 1.06105 0.94040 0.93810 1.19862 0.92575 0.94485 0.96096 1.22415 0.98920 1.00214 0.95262 1.23397 0.96907 0.92345 0.93242 1.67834 0.99647 1.15151 1.37601 1.22952 0.97424 0.96179 0.88945 1.22129 0.89036 1.05343 0.95243 1.98386 1.33472 1.96588 1.74489 1.21702 0.95992 1.00185 0.97451 1.21923 0.99466 0.99143 0.95754 1.20539 0.83508 0.95571 0.94872 1.44336 1.02859 1.65443 1.19292 1.19550 0.95624 1.36000 0.86243 0.89814 1.25800 0.98906 1.00914 0.98947 1.70195 1.25901 1.45901 1.16428 0.85344 0.78787 0.77824 0.79298 1.18158 1.23060 1.22537 0.91817 0.91942 0.93556 0.75375 0.84091 0.86548 0.81047 0.78963 0.80850 0.91991 0.92901 0.92491 0.92594 0.99113 0.92817 0.94590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.07 7.73 71.98 0.56 -3.51 16 2 C 0.16 5.76 3.19 44.98 0.14 5.90 16 3 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 4 C 0.15 4.78 2.33 45.07 0.10 4.89 16 5 H 0.08 2.55 7.58 -2.39 -0.02 2.53 16 6 N -0.70 -19.95 3.46 -442.15 -1.53 -21.48 16 7 C 0.52 14.14 7.69 87.66 0.67 14.81 16 8 O -0.58 -19.55 15.64 -3.04 -0.05 -19.60 16 9 C -0.11 -2.13 5.35 29.10 0.16 -1.98 16 10 C -0.02 -0.44 4.45 -19.65 -0.09 -0.53 16 11 C -0.15 -2.45 9.78 22.36 0.22 -2.23 16 12 C 0.10 1.63 11.18 84.68 0.95 2.57 16 13 N -0.49 -10.59 10.36 -195.74 -2.03 -12.62 16 14 C 0.10 2.21 10.99 84.72 0.93 3.14 16 15 C -0.09 -2.03 6.26 22.42 0.14 -1.89 16 16 Cl -0.06 -1.38 27.60 -2.72 -0.08 -1.46 16 17 C -0.11 -3.86 5.58 30.62 0.17 -3.68 16 18 C -0.12 -4.50 5.93 30.67 0.18 -4.32 16 19 C 0.18 8.18 5.28 86.36 0.46 8.64 16 20 N -0.60 -26.24 2.66 -675.13 -1.79 -28.03 16 21 C -0.24 -11.64 8.57 84.03 0.72 -10.92 16 22 H 0.08 3.73 6.23 -2.91 -0.02 3.71 16 23 C -0.05 -2.60 4.94 84.86 0.42 -2.18 16 24 N -0.94 -52.87 11.23 21.65 0.24 -52.63 16 25 Si 0.96 41.74 29.58 68.60 2.03 43.77 16 26 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 27 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 28 H -0.30 -13.27 7.11 99.48 0.71 -12.57 16 29 H 0.06 1.73 8.14 -2.39 -0.02 1.72 16 30 H 0.06 1.88 6.39 -2.39 -0.02 1.87 16 31 H 0.05 1.65 7.64 -2.39 -0.02 1.63 16 32 H 0.41 11.77 7.78 -92.71 -0.72 11.05 16 33 H 0.14 1.87 8.04 -2.39 -0.02 1.85 16 34 H 0.12 2.19 7.45 -2.39 -0.02 2.18 16 35 H 0.17 1.75 8.06 -2.91 -0.02 1.72 16 36 H 0.19 1.82 8.06 -2.91 -0.02 1.80 16 37 H 0.17 3.08 8.06 -2.91 -0.02 3.05 16 38 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.06 2.00 7.53 -2.39 -0.02 1.99 16 42 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 43 H 0.05 2.77 6.16 -2.39 -0.01 2.76 16 44 H 0.24 13.61 8.31 -92.71 -0.77 12.84 16 Total: -1.00 -64.33 367.24 2.83 -61.50 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: 0.30 Total: 21.85 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: 5.73 Total: 8.71 kcal Atomic # 7 Polarization: -109.66 SS G_CDS: -5.11 Total: -114.77 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.05 Total: -19.60 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Atomic # 17 Polarization: -1.38 SS G_CDS: -0.08 Total: -1.46 kcal Total: -64.33 2.83 -61.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993822785.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.084 kcal (2) G-P(sol) polarization free energy of solvation -64.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds