Wall clock time and date at job start Tue Mar 31 2020 20:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.70314 * 2 1 4 4 C 1.53195 * 109.58264 * 239.64798 * 2 1 3 5 5 H 1.08995 * 109.49702 * 305.56032 * 4 2 1 6 6 N 1.46499 * 109.49629 * 65.62509 * 4 2 1 7 7 C 1.34777 * 119.99597 * 204.93150 * 6 4 2 8 8 O 1.21277 * 120.00560 * 0.02562 * 7 6 4 9 9 C 1.50703 * 119.99983 * 179.97438 * 7 6 4 10 10 C 1.50699 * 109.47311 * 180.02562 * 9 7 6 11 11 C 1.38647 * 120.79688 * 100.00436 * 10 9 7 12 12 C 1.38185 * 119.17697 * 180.27496 * 11 10 9 13 13 N 1.31876 * 120.79418 * 359.47181 * 12 11 10 14 14 C 1.31848 * 121.74342 * 0.53880 * 13 12 11 15 15 C 1.38350 * 120.73669 * 359.72974 * 14 13 12 16 16 Cl 1.73605 * 120.43221 * 180.02562 * 15 14 13 17 17 C 1.53045 * 109.33842 * 185.59303 * 4 2 1 18 18 C 1.53037 * 109.53841 * 61.34720 * 17 4 2 19 19 C 1.53192 * 109.31320 * 298.63852 * 18 17 4 20 20 N 1.46922 * 108.77560 * 54.63209 * 19 18 17 21 21 C 1.36941 * 120.62831 * 126.43903 * 20 19 18 22 22 H 1.08000 * 119.99938 * 208.99603 * 21 20 19 23 23 C 1.38818 * 120.00108 * 28.99435 * 21 20 19 24 24 N 1.31614 * 119.99815 * 15.03162 * 23 21 20 25 25 Si 1.86803 * 119.99826 * 195.02661 * 23 21 20 26 26 H 1.48496 * 109.47142 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.46787 * 120.00356 * 25 23 21 28 28 H 1.48501 * 109.46888 * 240.00376 * 25 23 21 29 29 H 1.08998 * 109.47362 * 180.35907 * 1 2 3 30 30 H 1.09006 * 109.46613 * 300.35450 * 1 2 3 31 31 H 1.08993 * 109.47268 * 60.34831 * 1 2 3 32 32 H 0.96992 * 120.00428 * 24.93415 * 6 4 2 33 33 H 1.08999 * 109.46716 * 60.00256 * 9 7 6 34 34 H 1.09003 * 109.47079 * 300.00708 * 9 7 6 35 35 H 1.07997 * 120.40903 * 359.97438 * 11 10 9 36 36 H 1.08005 * 119.60185 * 179.72660 * 12 11 10 37 37 H 1.07997 * 119.63204 * 179.74919 * 14 13 12 38 38 H 1.09002 * 109.45840 * 181.37089 * 17 4 2 39 39 H 1.09000 * 109.45843 * 301.34030 * 17 4 2 40 40 H 1.09000 * 109.49816 * 58.58667 * 18 17 4 41 41 H 1.09000 * 109.50004 * 178.68148 * 18 17 4 42 42 H 1.08997 * 109.58563 * 174.42322 * 19 18 17 43 43 H 1.08999 * 109.58510 * 294.84544 * 19 18 17 44 44 H 0.96998 * 119.99799 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7293 -1.2455 5 1 1.6024 -1.7250 -1.2917 6 7 1.6704 0.0269 -2.4435 7 6 1.5483 -0.6045 -3.6280 8 8 1.7468 -1.7986 -3.7021 9 6 1.1639 0.1732 -4.8603 10 6 1.0958 -0.7595 -6.0420 11 6 -0.1219 -1.2431 -6.4954 12 6 -0.1450 -2.1011 -7.5783 13 7 0.9718 -2.4523 -8.1854 14 6 2.1479 -2.0127 -7.7829 15 6 2.2502 -1.1550 -6.7022 16 17 3.8028 -0.5807 -6.1793 17 6 3.5674 -0.8487 -1.1707 18 6 3.9569 -1.6664 0.0628 19 6 3.4657 -0.9473 1.3231 20 7 2.0233 -0.6993 1.1943 21 6 1.1547 -1.1115 2.1694 22 1 0.1366 -1.3654 1.9135 23 6 1.5827 -1.2031 3.4868 24 7 2.7064 -0.6254 3.8553 25 14 0.5637 -2.1462 4.7365 26 1 -0.6460 -2.6970 4.0743 27 1 1.3725 -3.2589 5.2960 28 1 0.1544 -1.2318 5.8326 29 1 -0.3634 -1.0276 0.0064 30 1 -0.3633 0.5194 0.8869 31 1 -0.3633 0.5084 -0.8930 32 1 1.5112 0.9818 -2.3843 33 1 1.9091 0.9459 -5.0493 34 1 0.1897 0.6376 -4.7077 35 1 -1.0406 -0.9567 -6.0051 36 1 -1.0895 -2.4855 -7.9344 37 1 3.0413 -2.3255 -8.3028 38 1 3.9372 -1.3457 -2.0676 39 1 4.0065 0.1465 -1.1000 40 1 3.4978 -2.6533 0.0049 41 1 5.0411 -1.7709 0.1026 42 1 3.6525 -1.5721 2.1965 43 1 3.9915 0.0014 1.4308 44 1 3.0057 -0.6897 4.7757 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993822787.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:27 Heat of formation + Delta-G solvation = 7.689039 kcal Electronic energy + Delta-G solvation = -27130.028218 eV Core-core repulsion = 23301.472498 eV Total energy + Delta-G solvation = -3828.555721 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.73670 -39.59359 -37.69278 -36.83660 -34.39616 -34.04721 -32.58983 -31.72113 -31.31870 -29.74379 -28.35328 -26.15599 -25.02506 -23.84263 -23.23313 -21.90542 -20.72286 -20.23401 -19.37896 -17.25390 -17.19297 -16.98247 -16.41498 -16.25195 -15.59297 -15.04448 -14.83442 -14.55095 -14.27212 -13.85001 -13.80282 -13.60973 -13.40247 -13.06435 -12.97992 -12.64386 -12.55031 -12.22193 -11.91970 -11.70810 -11.57429 -11.44574 -11.14624 -10.94748 -10.78440 -10.58077 -10.33029 -10.19323 -10.08226 -10.04329 -9.87794 -9.84196 -9.57741 -9.35761 -9.18997 -8.70712 -8.48090 -6.70509 -5.81927 -3.26500 0.66530 0.80375 1.81653 2.73547 3.19479 3.35039 3.43304 3.44842 3.53129 4.12590 4.13424 4.31879 4.46519 4.61700 4.81290 4.94018 5.01233 5.20521 5.27191 5.28985 5.36223 5.48825 5.51563 5.59689 5.77360 5.78039 5.94537 6.05918 6.18260 6.19684 6.30001 6.36475 6.50938 6.61143 6.69221 6.73295 6.83361 6.94713 7.03707 7.38559 7.54636 7.65455 7.68898 7.79123 8.35608 8.42966 9.17509 9.80175 10.36058 11.26583 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.021685 B = 0.002744 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.908726 B =10203.317238 C =10817.811066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.168 3.832 3 H 0.027 0.973 4 C 0.132 3.868 5 H 0.085 0.915 6 N -0.717 5.717 7 C 0.517 3.483 8 O -0.531 6.531 9 C -0.113 4.113 10 C -0.009 4.009 11 C -0.150 4.150 12 C 0.101 3.899 13 N -0.473 5.473 14 C 0.113 3.887 15 C -0.073 4.073 16 Cl -0.049 7.049 17 C -0.116 4.116 18 C -0.140 4.140 19 C 0.169 3.831 20 N -0.582 5.582 21 C -0.252 4.252 22 H 0.071 0.929 23 C 0.004 3.996 24 N -0.902 5.902 25 Si 0.901 3.099 26 H -0.277 1.277 27 H -0.289 1.289 28 H -0.290 1.290 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.038 0.962 32 H 0.396 0.604 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.144 0.856 36 H 0.163 0.837 37 H 0.164 0.836 38 H 0.049 0.951 39 H 0.053 0.947 40 H 0.056 0.944 41 H 0.051 0.949 42 H 0.089 0.911 43 H 0.019 0.981 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.640 3.972 -21.317 21.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.060 3.940 3 H 0.045 0.955 4 C 0.027 3.973 5 H 0.103 0.897 6 N -0.367 5.367 7 C 0.301 3.699 8 O -0.408 6.408 9 C -0.153 4.153 10 C -0.018 4.018 11 C -0.170 4.170 12 C -0.055 4.055 13 N -0.182 5.182 14 C -0.045 4.045 15 C -0.102 4.102 16 Cl -0.020 7.020 17 C -0.155 4.155 18 C -0.180 4.180 19 C 0.044 3.956 20 N -0.306 5.306 21 C -0.381 4.381 22 H 0.089 0.911 23 C -0.195 4.195 24 N -0.547 5.547 25 Si 0.731 3.269 26 H -0.202 1.202 27 H -0.215 1.215 28 H -0.217 1.217 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.057 0.943 32 H 0.230 0.770 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.162 0.838 36 H 0.180 0.820 37 H 0.181 0.819 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.108 0.892 43 H 0.037 0.963 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.348 2.590 -21.833 22.111 hybrid contribution -0.259 0.672 1.562 1.720 sum -2.606 3.261 -20.271 20.697 Atomic orbital electron populations 1.21815 0.95693 1.01691 1.00171 1.20560 0.93194 0.93564 0.86699 0.95514 1.21793 0.95107 0.96796 0.83632 0.89656 1.46098 1.70157 1.12167 1.08314 1.20077 0.77646 0.88060 0.84121 1.90740 1.49727 1.14827 1.85458 1.20792 1.05451 0.97993 0.91059 1.19633 0.91967 0.95777 0.94407 1.22060 0.97853 0.98853 0.98272 1.22832 0.96994 0.93642 0.92072 1.67795 0.98217 1.22444 1.29732 1.22745 0.96542 0.92468 0.92728 1.21962 0.87770 1.01574 0.98872 1.98391 1.26113 1.87388 1.90117 1.21751 0.95383 0.99997 0.98348 1.22185 0.99223 0.99709 0.96892 1.20850 0.83016 0.97208 0.94531 1.44049 1.03204 1.65118 1.18197 1.19216 0.94796 1.37942 0.86156 0.91136 1.25075 0.97805 0.99656 0.96955 1.70026 1.23253 1.44515 1.16861 0.86237 0.79687 0.79526 0.81413 1.20226 1.21543 1.21743 0.92680 0.91778 0.94337 0.77037 0.87182 0.87162 0.83838 0.81979 0.81898 0.93195 0.92837 0.92565 0.93039 0.89241 0.96333 0.93682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 7.84 37.16 0.29 -2.13 16 2 C 0.17 3.25 3.03 -67.60 -0.21 3.05 16 3 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 4 C 0.13 2.31 1.99 -67.81 -0.14 2.17 16 5 H 0.09 1.75 7.58 -51.93 -0.39 1.35 16 6 N -0.72 -9.59 4.57 -53.69 -0.25 -9.83 16 7 C 0.52 7.00 7.67 -10.98 -0.08 6.92 16 8 O -0.53 -9.49 15.63 5.56 0.09 -9.40 16 9 C -0.11 -1.05 5.35 -29.03 -0.16 -1.21 16 10 C -0.01 -0.09 4.45 -104.29 -0.46 -0.56 16 11 C -0.15 -1.36 9.78 -39.45 -0.39 -1.75 16 12 C 0.10 0.93 11.18 -17.55 -0.20 0.74 16 13 N -0.47 -5.26 10.36 -13.22 -0.14 -5.40 16 14 C 0.11 1.21 10.99 -17.50 -0.19 1.02 16 15 C -0.07 -0.82 6.25 -39.35 -0.25 -1.06 16 16 Cl -0.05 -0.54 27.59 -51.86 -1.43 -1.97 16 17 C -0.12 -2.06 5.46 -26.69 -0.15 -2.21 16 18 C -0.14 -2.76 6.08 -26.61 -0.16 -2.92 16 19 C 0.17 3.97 5.29 -3.71 -0.02 3.95 16 20 N -0.58 -13.94 2.99 -164.78 -0.49 -14.44 16 21 C -0.25 -6.60 8.61 -15.06 -0.13 -6.73 16 22 H 0.07 1.82 6.20 -52.49 -0.33 1.49 16 23 C 0.00 0.10 4.96 -17.43 -0.09 0.01 16 24 N -0.90 -25.54 11.14 55.49 0.62 -24.92 16 25 Si 0.90 21.33 29.58 -169.99 -5.03 16.31 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 28 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 29 H 0.05 1.04 7.41 -51.93 -0.38 0.66 16 30 H 0.06 1.22 7.66 -51.93 -0.40 0.82 16 31 H 0.04 0.54 7.78 -51.93 -0.40 0.14 16 32 H 0.40 4.15 8.60 -40.82 -0.35 3.80 16 33 H 0.11 0.87 7.46 -51.93 -0.39 0.48 16 34 H 0.11 0.70 8.04 -51.93 -0.42 0.29 16 35 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.16 0.99 8.06 -52.48 -0.42 0.57 16 37 H 0.16 1.39 8.06 -52.49 -0.42 0.97 16 38 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.09 2.36 6.06 -51.93 -0.31 2.04 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 370.24 15.07 5.58 5.58 Total: -1.00 -32.10 370.24 -9.68 -41.79 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -6.32 Total: 3.00 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: -2.32 Total: -0.71 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: -0.26 Total: -54.59 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.09 Total: -9.40 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.31 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.43 Total: -1.97 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.10 -9.68 -41.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993822787.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.474 kcal (2) G-P(sol) polarization free energy of solvation -32.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds